Wall clock time and date at job start Tue Mar 31 2020 22:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.53001 * 109.46771 * 120.00168 * 2 1 3 5 5 S 1.81409 * 109.46574 * 175.00210 * 4 2 1 6 6 O 1.42097 * 108.58173 * 65.51163 * 5 4 2 7 7 O 1.42101 * 108.57555 * 294.47845 * 5 4 2 8 8 C 1.81406 * 101.91772 * 179.97438 * 5 4 2 9 9 C 1.52998 * 109.46847 * 179.97438 * 8 5 4 10 10 C 1.50698 * 109.47266 * 180.02562 * 9 8 5 11 11 O 1.21280 * 119.99698 * 354.83556 * 10 9 8 12 12 N 1.34779 * 120.00551 * 174.84079 * 10 9 8 13 13 C 1.37145 * 119.99420 * 5.67082 * 12 10 9 14 14 H 1.07998 * 119.99633 * 55.67594 * 13 12 10 15 15 C 1.38885 * 120.00095 * 235.66821 * 13 12 10 16 16 N 1.31432 * 119.99822 * 9.25400 * 15 13 12 17 17 Si 1.86797 * 120.00347 * 189.25114 * 15 13 12 18 18 H 1.48497 * 109.46879 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47324 * 119.99950 * 17 15 13 20 20 H 1.48496 * 109.47473 * 240.00378 * 17 15 13 21 21 C 1.39785 * 120.00130 * 185.67673 * 12 10 9 22 22 C 1.38961 * 120.07283 * 175.18842 * 21 12 10 23 23 C 1.38081 * 119.91704 * 179.97438 * 22 21 12 24 24 C 1.38303 * 120.08186 * 359.97438 * 23 22 21 25 25 C 1.38314 * 120.15389 * 359.97438 * 24 23 22 26 26 C 1.38079 * 120.07970 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.47192 * 299.99858 * 1 2 3 28 28 H 1.09004 * 109.47339 * 59.99864 * 1 2 3 29 29 H 1.09006 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47122 * 239.99720 * 2 1 3 31 31 H 1.08993 * 109.47391 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47081 * 300.00294 * 3 2 1 33 33 H 1.08997 * 109.47306 * 59.99833 * 3 2 1 34 34 H 1.08994 * 109.47449 * 55.00006 * 4 2 1 35 35 H 1.09001 * 109.47008 * 294.98967 * 4 2 1 36 36 H 1.08998 * 109.47380 * 60.00035 * 8 5 4 37 37 H 1.09000 * 109.46892 * 299.99328 * 8 5 4 38 38 H 1.09000 * 109.47496 * 60.00025 * 9 8 5 39 39 H 1.09006 * 109.46959 * 299.99897 * 9 8 5 40 40 H 0.96994 * 119.99721 * 184.98388 * 16 15 13 41 41 H 1.07998 * 120.04322 * 359.69957 * 22 21 12 42 42 H 1.08007 * 119.96193 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.92595 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.95683 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.04129 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 16 3.8479 -0.8514 1.1766 6 8 4.3992 0.4564 1.2468 7 8 4.1976 -1.6944 0.0874 8 6 4.2235 -1.7201 2.7242 9 6 5.7353 -1.9248 2.8401 10 6 6.0473 -2.6470 4.1254 11 8 5.1609 -2.8834 4.9187 12 7 7.3114 -3.0300 4.3935 13 6 8.3319 -2.6619 3.5545 14 1 8.4965 -1.6185 3.3299 15 6 9.1537 -3.6310 2.9938 16 7 8.8480 -4.9033 3.1169 17 14 10.6935 -3.1263 2.0645 18 1 10.8116 -1.6460 2.0694 19 1 11.8855 -3.7196 2.7222 20 1 10.6080 -3.6118 0.6638 21 6 7.5823 -3.8025 5.5266 22 6 8.8669 -4.2823 5.7515 23 6 9.1309 -5.0447 6.8721 24 6 8.1189 -5.3304 7.7704 25 6 6.8394 -4.8536 7.5502 26 6 6.5680 -4.0907 6.4318 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6053 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 3.7247 -2.6893 2.7272 37 1 3.8710 -1.1274 3.5683 38 1 6.2345 -0.9558 2.8370 39 1 6.0874 -2.5177 1.9959 40 1 9.4577 -5.5826 2.7889 41 1 9.6568 -4.0630 5.0484 42 1 10.1291 -5.4183 7.0474 43 1 8.3282 -5.9273 8.6458 44 1 6.0515 -5.0783 8.2540 45 1 5.5686 -3.7190 6.2602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195118371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:33 Heat of formation + Delta-G solvation = -89.868613 kcal Electronic energy + Delta-G solvation = -27614.233500 eV Core-core repulsion = 23723.886839 eV Total energy + Delta-G solvation = -3890.346661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.55233 -39.05531 -38.03728 -37.45588 -36.88389 -36.84062 -34.19599 -33.85689 -31.36037 -30.55470 -28.96650 -28.05405 -27.19700 -26.01567 -23.35840 -22.77268 -21.49035 -21.09658 -19.84871 -19.55005 -18.42528 -17.66568 -17.48583 -17.25203 -16.88311 -16.77399 -16.39368 -16.08698 -15.68865 -15.30851 -14.85790 -14.83030 -14.76826 -14.50281 -14.21309 -14.00077 -13.69585 -13.46992 -13.42360 -13.22056 -13.14200 -13.03285 -13.02400 -12.97934 -12.85602 -12.50532 -12.41405 -12.38901 -12.08810 -11.96526 -11.90509 -11.75895 -11.71562 -11.09597 -11.04824 -10.58549 -9.99249 -9.54654 -8.75248 -8.17716 -6.50542 -0.99795 0.65615 0.80416 1.38030 1.42976 1.55330 1.83257 1.91554 2.21179 2.51564 2.85087 2.89834 3.08109 3.33608 3.54627 3.56852 3.75432 3.91794 4.01658 4.06019 4.31496 4.34432 4.37546 4.51704 4.56788 4.59358 4.65262 4.66383 4.82426 4.89822 4.94159 4.94463 5.00372 5.02351 5.15733 5.20400 5.33878 5.36879 5.41129 5.41747 5.78689 5.87050 5.88247 6.02033 6.20817 6.59891 6.94013 7.36286 7.72429 8.59651 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.003311 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.962388 B = 8455.701991 C = 9941.551108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.190 4.190 4 C -0.585 4.585 5 S 2.416 3.584 6 O -0.964 6.964 7 O -0.980 6.980 8 C -0.591 4.591 9 C -0.112 4.112 10 C 0.486 3.514 11 O -0.577 6.577 12 N -0.397 5.397 13 C -0.388 4.388 14 H 0.100 0.900 15 C 0.023 3.977 16 N -0.873 5.873 17 Si 0.974 3.026 18 H -0.254 1.254 19 H -0.269 1.269 20 H -0.276 1.276 21 C 0.148 3.852 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.164 4.164 25 C -0.119 4.119 26 C -0.216 4.216 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.276 0.724 41 H 0.116 0.884 42 H 0.132 0.868 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 6.642 -2.030 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.247 4.247 4 C -0.718 4.718 5 S 2.604 3.396 6 O -0.961 6.961 7 O -0.977 6.977 8 C -0.719 4.719 9 C -0.153 4.153 10 C 0.278 3.722 11 O -0.463 6.463 12 N -0.104 5.104 13 C -0.515 4.515 14 H 0.118 0.882 15 C -0.183 4.183 16 N -0.506 5.506 17 Si 0.796 3.204 18 H -0.177 1.177 19 H -0.194 1.194 20 H -0.202 1.202 21 C 0.052 3.948 22 C -0.148 4.148 23 C -0.144 4.144 24 C -0.183 4.183 25 C -0.137 4.137 26 C -0.235 4.235 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.150 0.850 43 H 0.160 0.840 44 H 0.156 0.844 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.763 6.676 -2.495 13.754 hybrid contribution 0.734 -0.547 0.021 0.915 sum -11.029 6.129 -2.474 12.858 Atomic orbital electron populations 1.21819 0.91562 1.03075 1.03257 1.20984 0.99505 0.96063 0.94766 1.22425 1.02356 0.95761 1.04179 1.30250 1.20133 1.12568 1.08843 1.07944 0.80343 0.74807 0.76486 1.93514 1.78136 1.37782 1.86650 1.93534 1.83502 1.69444 1.51230 1.30153 1.02609 1.16298 1.22877 1.21052 0.94071 1.02913 0.97240 1.21167 0.81763 0.80908 0.88370 1.90128 1.47315 1.59397 1.49415 1.41219 1.06454 1.43551 1.19227 1.19709 1.11275 0.94224 1.26252 0.88248 1.26341 1.01959 0.94577 0.95471 1.70135 1.36382 1.00885 1.43202 0.85171 0.77575 0.79742 0.77949 1.17728 1.19439 1.20189 1.18685 0.94475 0.94514 0.87115 1.21083 0.96227 0.99783 0.97756 1.21151 0.99957 0.98949 0.94301 1.21240 0.93093 1.03200 1.00791 1.21262 0.97456 0.97812 0.97218 1.22858 1.02010 1.03096 0.95574 0.91183 0.91244 0.91476 0.90309 0.92196 0.90415 0.90532 0.82082 0.81760 0.83815 0.82700 0.87298 0.88613 0.91437 0.86628 0.85036 0.83983 0.84443 0.81749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 71.98 0.66 -0.88 16 2 C -0.09 -1.49 2.92 -10.79 -0.03 -1.52 16 3 C -0.19 -3.32 8.83 71.98 0.64 -2.69 16 4 C -0.59 -8.63 5.26 71.98 0.38 -8.25 16 5 S 2.42 61.23 4.51 -56.49 -0.25 60.98 16 6 O -0.96 -29.31 15.46 -127.37 -1.97 -31.28 16 7 O -0.98 -32.82 18.10 -127.37 -2.31 -35.13 16 8 C -0.59 -16.45 5.11 71.98 0.37 -16.08 16 9 C -0.11 -4.34 4.53 29.85 0.14 -4.20 16 10 C 0.49 22.90 7.57 87.66 0.66 23.57 16 11 O -0.58 -27.36 12.37 -3.03 -0.04 -27.40 16 12 N -0.40 -20.37 2.62 -458.90 -1.20 -21.57 16 13 C -0.39 -19.56 7.61 84.02 0.64 -18.92 16 14 H 0.10 4.77 7.85 -2.91 -0.02 4.74 16 15 C 0.02 1.16 3.49 84.91 0.30 1.45 16 16 N -0.87 -46.21 11.39 21.65 0.25 -45.96 16 17 Si 0.97 38.88 29.57 68.60 2.03 40.90 16 18 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 19 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 21 C 0.15 7.58 6.05 38.22 0.23 7.82 16 22 C -0.13 -6.18 7.87 22.41 0.18 -6.00 16 23 C -0.12 -5.06 10.04 22.25 0.22 -4.83 16 24 C -0.16 -6.01 10.04 22.30 0.22 -5.79 16 25 C -0.12 -4.67 10.04 22.25 0.22 -4.45 16 26 C -0.22 -10.17 9.06 22.40 0.20 -9.97 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.36 5.41 -2.39 -0.01 1.34 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.14 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.15 3.63 8.04 -2.39 -0.02 3.61 16 38 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 39 H 0.10 3.92 8.04 -2.38 -0.02 3.90 16 40 H 0.28 13.75 8.32 -92.71 -0.77 12.98 16 41 H 0.12 5.87 5.15 -2.91 -0.02 5.85 16 42 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 43 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 44 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 45 H 0.17 8.00 4.50 -64.39 -0.29 7.71 16 Total: -1.00 -72.40 375.86 2.24 -70.16 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: 0.71 Total: 40.04 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 5.03 Total: -50.75 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: -0.96 Total: -67.54 kcal Atomic # 8 Polarization: -89.50 SS G_CDS: -4.31 Total: -93.81 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.90 kcal Atomic # 16 Polarization: 61.23 SS G_CDS: -0.25 Total: 60.98 kcal Total: -72.40 2.24 -70.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195118371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.704 kcal (2) G-P(sol) polarization free energy of solvation -72.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds