Wall clock time and date at job start Tue Mar 31 2020 23:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.55759 * 2 1 4 4 C 1.53301 * 109.51021 * 239.86934 * 2 1 3 5 5 N 1.47152 * 108.38290 * 187.77179 * 4 2 1 6 6 S 1.65602 * 120.98212 * 230.51445 * 5 4 2 7 7 O 1.42100 * 104.27648 * 19.81407 * 6 5 4 8 8 O 1.42099 * 104.27421 * 147.67036 * 6 5 4 9 9 C 1.81401 * 104.44821 * 263.73979 * 6 5 4 10 10 C 1.53003 * 109.46707 * 179.97438 * 9 6 5 11 11 C 1.50706 * 109.47018 * 180.02562 * 10 9 6 12 12 H 1.08008 * 119.99547 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00039 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00022 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99837 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47285 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47263 * 119.99685 * 15 13 11 18 18 H 1.48497 * 109.47038 * 240.00203 * 15 13 11 19 19 C 1.47154 * 118.03329 * 50.54359 * 5 4 2 20 20 H 1.08996 * 109.68635 * 69.22088 * 19 5 4 21 21 C 1.50695 * 109.67782 * 189.73790 * 19 5 4 22 22 C 1.38234 * 120.00068 * 280.67404 * 21 19 5 23 23 C 1.38241 * 120.00093 * 180.02562 * 22 21 19 24 24 C 1.38227 * 120.00012 * 0.02562 * 23 22 21 25 25 C 1.38235 * 119.99964 * 0.26050 * 24 23 22 26 26 C 1.38233 * 120.00013 * 359.48051 * 25 24 23 27 27 C 1.53298 * 108.41222 * 309.47754 * 19 5 4 28 28 O 1.42964 * 109.51465 * 120.12899 * 2 1 3 29 29 H 1.09004 * 109.47598 * 180.13137 * 1 2 3 30 30 H 1.09003 * 109.46967 * 300.12551 * 1 2 3 31 31 H 1.09001 * 109.47524 * 60.12812 * 1 2 3 32 32 H 1.08998 * 109.67496 * 68.05420 * 4 2 1 33 33 H 1.08995 * 109.68122 * 307.49973 * 4 2 1 34 34 H 1.08999 * 109.47452 * 299.99711 * 9 6 5 35 35 H 1.09003 * 109.47249 * 60.00573 * 9 6 5 36 36 H 1.08996 * 109.47339 * 299.99725 * 10 9 6 37 37 H 1.09003 * 109.47140 * 60.00719 * 10 9 6 38 38 H 0.97002 * 119.99795 * 180.02562 * 14 13 11 39 39 H 1.07997 * 120.00148 * 0.02562 * 22 21 19 40 40 H 1.08003 * 120.00069 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.00581 * 179.97438 * 24 23 22 42 42 H 1.08009 * 120.00069 * 179.72647 * 25 24 23 43 43 H 1.08000 * 120.00049 * 180.23566 * 26 25 24 44 44 H 1.09007 * 109.50794 * 172.21453 * 27 19 5 45 45 H 1.09003 * 109.51260 * 292.36065 * 27 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7253 -1.2497 5 7 3.5011 -0.8763 -1.1336 6 16 4.5063 -0.4193 -2.3678 7 8 3.7225 0.4756 -3.1450 8 8 5.6877 0.0213 -1.7125 9 6 4.8214 -1.9517 -3.2859 10 6 5.7491 -1.6572 -4.4664 11 6 6.0105 -2.9302 -5.2296 12 1 5.5596 -3.8565 -4.9053 13 6 6.8252 -2.9123 -6.3418 14 7 7.3746 -1.7845 -6.7364 15 14 7.1485 -4.4900 -7.2882 16 1 6.4193 -5.6119 -6.6440 17 1 6.6787 -4.3327 -8.6880 18 1 8.6049 -4.7799 -7.2843 19 6 4.0406 -1.4460 0.1113 20 1 3.7761 -2.5013 0.1770 21 6 5.5400 -1.2964 0.1298 22 6 6.3311 -2.1749 -0.5866 23 6 7.7066 -2.0380 -0.5692 24 6 8.2909 -1.0231 0.1650 25 6 7.5001 -0.1482 0.8862 26 6 6.1244 -0.2818 0.8646 27 6 3.4312 -0.6863 1.2953 28 8 2.0075 -0.6764 1.1655 29 1 -0.3634 -1.0277 0.0024 30 1 -0.3633 0.5158 0.8889 31 1 -0.3634 0.5118 -0.8911 32 1 1.8030 -0.1399 -2.1376 33 1 1.5757 -1.7080 -1.3207 34 1 5.2925 -2.6803 -2.6261 35 1 3.8785 -2.3535 -3.6568 36 1 5.2777 -0.9288 -5.1261 37 1 6.6922 -1.2552 -4.0960 38 1 7.9475 -1.7718 -7.5191 39 1 5.8746 -2.9681 -1.1600 40 1 8.3247 -2.7246 -1.1287 41 1 9.3656 -0.9163 0.1790 42 1 7.9569 0.6422 1.4635 43 1 5.5064 0.4041 1.4250 44 1 3.7092 -1.1801 2.2265 45 1 3.8030 0.3383 1.3006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246777501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:12 Heat of formation + Delta-G solvation = -70.525638 kcal Electronic energy + Delta-G solvation = -29206.413087 eV Core-core repulsion = 25316.905200 eV Total energy + Delta-G solvation = -3889.507887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.15880 -38.64321 -36.49712 -35.41481 -34.99595 -33.92682 -33.46230 -31.32808 -30.77021 -30.52255 -27.69240 -26.10628 -25.52443 -23.80499 -22.35492 -21.59591 -21.48804 -20.67401 -18.50885 -17.63696 -16.88901 -16.65244 -16.42151 -16.08646 -15.65706 -15.22014 -15.00174 -14.72884 -14.65395 -14.54676 -14.39106 -13.74823 -13.51230 -13.07743 -12.92803 -12.65668 -12.55204 -12.45964 -12.35670 -11.98003 -11.76605 -11.73197 -11.55755 -11.38280 -11.19574 -11.12149 -10.99110 -10.93214 -10.74989 -10.55154 -10.39334 -10.27467 -10.15584 -9.74050 -9.27827 -8.68584 -8.52361 -8.49531 -8.24849 -6.13880 -4.19315 0.75100 1.58998 1.77537 2.97276 3.23399 3.30980 3.34153 3.53905 4.07868 4.28814 4.37011 4.44610 4.50031 4.65275 4.78978 4.89565 4.92054 5.02888 5.16472 5.21685 5.24335 5.29261 5.34977 5.44508 5.49976 5.52776 5.61088 5.64623 5.71288 5.73632 5.79418 5.93884 5.97776 6.07006 6.24987 6.33387 6.50340 6.55693 6.73089 6.74319 6.86117 7.01239 7.29390 7.33995 7.35807 7.79220 8.16521 8.84247 9.45527 10.97127 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.004484 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.059738 B = 6242.387991 C = 7643.111813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.064 0.936 4 C 0.087 3.913 5 N -1.004 6.004 6 S 2.581 3.419 7 O -0.970 6.970 8 O -0.936 6.936 9 C -0.596 4.596 10 C 0.033 3.967 11 C -0.518 4.518 12 H 0.061 0.939 13 C 0.059 3.941 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.165 3.835 20 H 0.090 0.910 21 C -0.085 4.085 22 C -0.120 4.120 23 C -0.097 4.097 24 C -0.112 4.112 25 C -0.111 4.111 26 C -0.086 4.086 27 C 0.057 3.943 28 O -0.376 6.376 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 1.366 17.762 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.082 0.918 4 C -0.039 4.039 5 N -0.840 5.840 6 S 2.682 3.318 7 O -0.961 6.961 8 O -0.926 6.926 9 C -0.729 4.729 10 C -0.006 4.006 11 C -0.557 4.557 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.059 3.941 20 H 0.108 0.892 21 C -0.087 4.087 22 C -0.138 4.138 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.105 4.105 27 C -0.021 4.021 28 O -0.295 6.295 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.124 0.876 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.728 2.276 17.612 19.367 hybrid contribution 0.367 -1.353 -1.102 1.783 sum -7.361 0.923 16.510 18.100 Atomic orbital electron populations 1.21742 0.92319 1.03234 1.02847 1.22433 0.95284 0.95469 0.85168 0.91827 1.22180 0.79785 1.01907 0.99993 1.58280 1.16481 1.80242 1.29029 1.06023 0.73877 0.78243 0.73685 1.93501 1.70149 1.61754 1.70693 1.93725 1.47214 1.80340 1.71276 1.30717 1.10261 1.18890 1.13037 1.18906 0.92988 0.99172 0.89510 1.21028 1.29737 0.93805 1.11161 0.92083 1.25051 0.95574 0.96524 0.97229 1.69966 1.31788 1.25636 1.25432 0.86449 0.78125 0.83132 0.79813 1.19635 1.20789 1.20781 1.20391 0.90039 0.98582 0.85089 0.89181 1.19463 0.92620 0.97146 0.99451 1.21095 0.94765 0.99107 0.98856 1.20986 0.94527 0.98095 0.97943 1.21047 0.99384 0.95431 0.97161 1.20930 0.93681 0.98764 0.99561 1.20711 0.94924 0.96077 0.98772 1.23066 0.80936 1.00457 0.97650 1.87922 1.20719 1.77623 1.43238 0.91497 0.91566 0.90595 0.87590 0.90657 0.85940 0.86651 0.95241 0.94826 0.92611 0.85988 0.85990 0.86629 0.86727 0.86622 0.87580 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.57 37.16 0.36 -0.85 16 2 C 0.08 0.84 3.40 -26.58 -0.09 0.75 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.09 1.07 5.98 -3.53 -0.02 1.05 16 5 N -1.00 -14.37 3.27 -107.25 -0.35 -14.72 16 6 S 2.58 47.72 4.86 -107.50 -0.52 47.20 16 7 O -0.97 -20.65 16.46 -57.54 -0.95 -21.60 16 8 O -0.94 -18.56 12.48 -57.54 -0.72 -19.28 16 9 C -0.60 -11.69 5.83 37.16 0.22 -11.47 16 10 C 0.03 0.85 4.98 -27.88 -0.14 0.71 16 11 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 12 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 15 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.16 2.07 3.34 -68.57 -0.23 1.84 16 20 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 21 C -0.09 -1.20 3.01 -104.63 -0.31 -1.52 16 22 C -0.12 -1.81 6.79 -39.58 -0.27 -2.08 16 23 C -0.10 -1.49 10.02 -39.58 -0.40 -1.89 16 24 C -0.11 -1.59 10.05 -39.59 -0.40 -1.99 16 25 C -0.11 -1.51 10.05 -39.58 -0.40 -1.90 16 26 C -0.09 -1.17 7.92 -39.58 -0.31 -1.49 16 27 C 0.06 0.62 5.52 37.31 0.21 0.83 16 28 O -0.38 -4.41 10.38 -35.23 -0.37 -4.77 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.11 1.36 6.74 -51.93 -0.35 1.01 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 2.17 4.83 -51.92 -0.25 1.92 16 35 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 36 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 1.74 5.70 -52.49 -0.30 1.44 16 40 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 41 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 42 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 43 H 0.12 1.32 5.79 -52.49 -0.30 1.02 16 44 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 45 H 0.06 0.68 6.23 -51.93 -0.32 0.36 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -34.20 363.55 -10.48 -44.68 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.56 Total: 3.57 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -2.20 Total: -30.99 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.39 Total: -40.37 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -2.03 Total: -45.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 47.72 SS G_CDS: -0.52 Total: 47.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.20 -10.48 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246777501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.849 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds