Wall clock time and date at job start Tue Mar 31 2020 23:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.55759 * 2 1 4 4 C 1.53301 * 109.51021 * 239.86934 * 2 1 3 5 5 N 1.47152 * 108.38290 * 187.77179 * 4 2 1 6 6 S 1.65602 * 120.98212 * 230.51445 * 5 4 2 7 7 O 1.42100 * 104.27648 * 19.81407 * 6 5 4 8 8 O 1.42099 * 104.27421 * 147.67036 * 6 5 4 9 9 C 1.81401 * 104.44821 * 263.73979 * 6 5 4 10 10 C 1.53003 * 109.46707 * 179.97438 * 9 6 5 11 11 C 1.50706 * 109.47018 * 180.02562 * 10 9 6 12 12 H 1.08008 * 119.99547 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00039 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00022 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99837 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47285 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47263 * 119.99685 * 15 13 11 18 18 H 1.48497 * 109.47038 * 240.00203 * 15 13 11 19 19 C 1.47154 * 118.03329 * 50.54359 * 5 4 2 20 20 H 1.08996 * 109.68635 * 69.22088 * 19 5 4 21 21 C 1.50695 * 109.67782 * 189.73790 * 19 5 4 22 22 C 1.38234 * 120.00068 * 280.67404 * 21 19 5 23 23 C 1.38241 * 120.00093 * 180.02562 * 22 21 19 24 24 C 1.38227 * 120.00012 * 0.02562 * 23 22 21 25 25 C 1.38235 * 119.99964 * 0.26050 * 24 23 22 26 26 C 1.38233 * 120.00013 * 359.48051 * 25 24 23 27 27 C 1.53298 * 108.41222 * 309.47754 * 19 5 4 28 28 O 1.42964 * 109.51465 * 120.12899 * 2 1 3 29 29 H 1.09004 * 109.47598 * 180.13137 * 1 2 3 30 30 H 1.09003 * 109.46967 * 300.12551 * 1 2 3 31 31 H 1.09001 * 109.47524 * 60.12812 * 1 2 3 32 32 H 1.08998 * 109.67496 * 68.05420 * 4 2 1 33 33 H 1.08995 * 109.68122 * 307.49973 * 4 2 1 34 34 H 1.08999 * 109.47452 * 299.99711 * 9 6 5 35 35 H 1.09003 * 109.47249 * 60.00573 * 9 6 5 36 36 H 1.08996 * 109.47339 * 299.99725 * 10 9 6 37 37 H 1.09003 * 109.47140 * 60.00719 * 10 9 6 38 38 H 0.97002 * 119.99795 * 180.02562 * 14 13 11 39 39 H 1.07997 * 120.00148 * 0.02562 * 22 21 19 40 40 H 1.08003 * 120.00069 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.00581 * 179.97438 * 24 23 22 42 42 H 1.08009 * 120.00069 * 179.72647 * 25 24 23 43 43 H 1.08000 * 120.00049 * 180.23566 * 26 25 24 44 44 H 1.09007 * 109.50794 * 172.21453 * 27 19 5 45 45 H 1.09003 * 109.51260 * 292.36065 * 27 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7253 -1.2497 5 7 3.5011 -0.8763 -1.1336 6 16 4.5063 -0.4193 -2.3678 7 8 3.7225 0.4756 -3.1450 8 8 5.6877 0.0213 -1.7125 9 6 4.8214 -1.9517 -3.2859 10 6 5.7491 -1.6572 -4.4664 11 6 6.0105 -2.9302 -5.2296 12 1 5.5596 -3.8565 -4.9053 13 6 6.8252 -2.9123 -6.3418 14 7 7.3746 -1.7845 -6.7364 15 14 7.1485 -4.4900 -7.2882 16 1 6.4193 -5.6119 -6.6440 17 1 6.6787 -4.3327 -8.6880 18 1 8.6049 -4.7799 -7.2843 19 6 4.0406 -1.4460 0.1113 20 1 3.7761 -2.5013 0.1770 21 6 5.5400 -1.2964 0.1298 22 6 6.3311 -2.1749 -0.5866 23 6 7.7066 -2.0380 -0.5692 24 6 8.2909 -1.0231 0.1650 25 6 7.5001 -0.1482 0.8862 26 6 6.1244 -0.2818 0.8646 27 6 3.4312 -0.6863 1.2953 28 8 2.0075 -0.6764 1.1655 29 1 -0.3634 -1.0277 0.0024 30 1 -0.3633 0.5158 0.8889 31 1 -0.3634 0.5118 -0.8911 32 1 1.8030 -0.1399 -2.1376 33 1 1.5757 -1.7080 -1.3207 34 1 5.2925 -2.6803 -2.6261 35 1 3.8785 -2.3535 -3.6568 36 1 5.2777 -0.9288 -5.1261 37 1 6.6922 -1.2552 -4.0960 38 1 7.9475 -1.7718 -7.5191 39 1 5.8746 -2.9681 -1.1600 40 1 8.3247 -2.7246 -1.1287 41 1 9.3656 -0.9163 0.1790 42 1 7.9569 0.6422 1.4635 43 1 5.5064 0.4041 1.4250 44 1 3.7092 -1.1801 2.2265 45 1 3.8030 0.3383 1.3006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246777501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:10 Heat of formation + Delta-G solvation = -93.208142 kcal Electronic energy + Delta-G solvation = -29207.396674 eV Core-core repulsion = 25316.905200 eV Total energy + Delta-G solvation = -3890.491474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.16367 -39.66806 -38.01423 -36.93938 -36.07662 -35.92923 -34.37237 -33.22966 -31.75396 -31.67178 -28.65094 -27.63908 -26.93807 -24.77544 -23.68594 -23.20855 -22.48568 -21.74696 -19.87585 -19.10665 -18.40336 -17.87141 -17.66075 -17.15491 -17.11654 -16.58777 -16.31685 -16.11172 -15.90418 -15.68569 -15.48251 -15.07587 -14.81867 -14.46561 -14.14729 -14.09955 -13.78696 -13.69635 -13.32131 -13.17057 -13.13053 -13.06014 -12.94230 -12.79435 -12.73804 -12.52144 -12.35427 -12.26415 -12.12314 -11.95680 -11.79285 -11.66189 -11.44651 -11.25539 -11.01618 -10.67266 -9.79729 -9.61233 -9.36980 -8.27783 -6.41795 -0.73245 0.49039 0.66983 1.38842 1.39112 1.52422 1.67756 2.35935 2.70473 2.83451 2.97091 3.05718 3.17611 3.42982 3.61803 3.79625 3.89355 3.99939 4.02890 4.07484 4.20270 4.24841 4.30344 4.35422 4.37523 4.59623 4.62545 4.66897 4.72550 4.77249 4.86839 4.93080 4.95626 5.10471 5.18818 5.22720 5.24865 5.28347 5.33670 5.48648 5.63754 5.65670 5.67373 5.76045 6.04475 6.15396 6.27749 6.71376 7.28513 8.84642 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.004484 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.059738 B = 6242.387991 C = 7643.111813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 H 0.057 0.943 4 C 0.078 3.922 5 N -0.995 5.995 6 S 2.602 3.398 7 O -1.002 7.002 8 O -0.952 6.952 9 C -0.598 4.598 10 C 0.033 3.967 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.971 3.029 16 H -0.256 1.256 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.162 3.838 20 H 0.109 0.891 21 C -0.092 4.092 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.094 4.094 27 C 0.058 3.942 28 O -0.379 6.379 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.141 0.859 35 H 0.131 0.869 36 H -0.002 1.002 37 H 0.007 0.993 38 H 0.267 0.733 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 0.205 19.454 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.015 3.985 3 H 0.075 0.925 4 C -0.047 4.047 5 N -0.834 5.834 6 S 2.702 3.298 7 O -0.992 6.992 8 O -0.941 6.941 9 C -0.730 4.730 10 C -0.006 4.006 11 C -0.574 4.574 12 H 0.091 0.909 13 C -0.199 4.199 14 N -0.573 5.573 15 Si 0.794 3.206 16 H -0.180 1.180 17 H -0.204 1.204 18 H -0.202 1.202 19 C 0.057 3.943 20 H 0.127 0.873 21 C -0.093 4.093 22 C -0.155 4.155 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.112 4.112 27 C -0.020 4.020 28 O -0.297 6.297 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.016 0.984 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.151 0.849 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.104 1.100 19.297 21.365 hybrid contribution 0.781 -0.943 -1.542 1.969 sum -8.323 0.157 17.756 19.610 Atomic orbital electron populations 1.21756 0.90186 1.04022 1.03787 1.22525 0.96914 0.94760 0.84270 0.92545 1.22482 0.78286 1.03347 1.00586 1.57925 1.17059 1.80210 1.28207 1.05148 0.73672 0.77310 0.73706 1.93455 1.70915 1.62686 1.72184 1.93704 1.48529 1.80495 1.71414 1.30659 1.09735 1.20982 1.11575 1.18688 0.92859 0.97916 0.91145 1.21496 1.29645 0.94784 1.11516 0.90887 1.26067 0.95251 1.00161 0.98408 1.70108 1.32735 1.28266 1.26207 0.85313 0.78209 0.78889 0.78163 1.17976 1.20358 1.20226 1.20668 0.89147 0.99919 0.84584 0.87296 1.19646 0.93474 0.96976 0.99232 1.21245 0.94968 0.99785 0.99539 1.21190 0.95053 0.98996 0.98890 1.21341 1.00551 0.95293 0.97061 1.21315 0.93941 0.99062 0.99392 1.21091 0.95398 0.96109 0.98600 1.23179 0.80567 1.00486 0.97776 1.87936 1.20955 1.77582 1.43249 0.90776 0.90766 0.89578 0.88438 0.88450 0.84110 0.85081 0.98396 0.97487 0.92408 0.85806 0.86241 0.85044 0.84223 0.84399 0.84941 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.57 71.98 0.69 -1.28 16 2 C 0.07 1.48 3.40 30.69 0.10 1.58 16 3 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 4 C 0.08 1.77 5.98 86.36 0.52 2.28 16 5 N -1.00 -27.01 3.27 -493.24 -1.61 -28.62 16 6 S 2.60 96.66 4.86 -56.49 -0.27 96.38 16 7 O -1.00 -43.39 16.46 -127.65 -2.10 -45.49 16 8 O -0.95 -38.07 12.48 -127.65 -1.59 -39.66 16 9 C -0.60 -23.69 5.83 71.98 0.42 -23.27 16 10 C 0.03 1.74 4.98 29.85 0.15 1.89 16 11 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 12 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 13 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 14 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 15 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 16 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 C 0.16 3.70 3.34 44.22 0.15 3.85 16 20 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 21 C -0.09 -2.47 3.01 -19.87 -0.06 -2.53 16 22 C -0.14 -4.11 6.79 22.27 0.15 -3.96 16 23 C -0.12 -3.84 10.02 22.27 0.22 -3.61 16 24 C -0.12 -3.50 10.05 22.27 0.22 -3.27 16 25 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 26 C -0.09 -2.39 7.92 22.27 0.18 -2.21 16 27 C 0.06 1.09 5.52 72.08 0.40 1.49 16 28 O -0.38 -7.69 10.38 -148.98 -1.55 -9.24 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 2.41 6.74 -2.39 -0.02 2.40 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.14 4.98 4.83 -2.39 -0.01 4.97 16 35 H 0.13 4.68 8.14 -2.39 -0.02 4.66 16 36 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.12 3.50 5.70 -2.91 -0.02 3.49 16 40 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 42 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.14 2.81 5.79 -2.91 -0.02 2.79 16 44 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.06 1.18 6.23 -2.39 -0.01 1.16 16 Total: -1.00 -75.01 363.55 0.23 -74.79 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.99 Total: 24.22 kcal Atomic # 6 Polarization: -65.11 SS G_CDS: 4.06 Total: -61.06 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -1.33 Total: -85.30 kcal Atomic # 8 Polarization: -89.15 SS G_CDS: -5.24 Total: -94.39 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 96.66 SS G_CDS: -0.27 Total: 96.38 kcal Total: -75.01 0.23 -74.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246777501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.422 kcal (2) G-P(sol) polarization free energy of solvation -75.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds