Wall clock time and date at job start Tue Mar 31 2020 23:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46930 * 2 1 4 4 S 1.81408 * 109.46837 * 180.02562 * 3 2 1 5 5 O 1.42100 * 108.57766 * 65.51233 * 4 3 2 6 6 O 1.42099 * 108.57682 * 294.48227 * 4 3 2 7 7 C 1.81408 * 101.92010 * 179.97438 * 4 3 2 8 8 C 1.50700 * 109.46740 * 179.97438 * 7 4 3 9 9 O 1.21286 * 120.00350 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99602 * 179.97438 * 8 7 4 11 11 C 1.46504 * 120.00240 * 4.74832 * 10 8 7 12 12 C 1.50697 * 109.46906 * 269.99669 * 11 10 8 13 13 H 1.08004 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00353 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00391 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99694 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47341 * 89.99663 * 16 14 12 18 18 H 1.48500 * 109.47361 * 209.99962 * 16 14 12 19 19 H 1.48503 * 109.47252 * 329.99932 * 16 14 12 20 20 C 1.39921 * 120.00051 * 184.73635 * 10 8 7 21 21 C 1.38880 * 120.06637 * 67.90141 * 20 10 8 22 22 C 1.38112 * 119.92591 * 180.29734 * 21 20 10 23 23 C 1.38279 * 120.07227 * 359.46855 * 22 21 20 24 24 C 1.50699 * 119.93129 * 180.27773 * 23 22 21 25 25 C 1.38280 * 120.14278 * 0.50982 * 23 22 21 26 26 C 1.38114 * 120.06964 * 359.76678 * 25 23 22 27 27 H 1.08994 * 109.47065 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47000 * 300.00494 * 1 2 3 29 29 H 1.09003 * 109.46800 * 60.00030 * 1 2 3 30 30 H 1.08998 * 109.47435 * 239.99721 * 2 1 3 31 31 H 1.08999 * 109.47071 * 119.99541 * 2 1 3 32 32 H 1.08995 * 109.47873 * 60.00100 * 3 2 1 33 33 H 1.09003 * 109.47355 * 299.99630 * 3 2 1 34 34 H 1.09006 * 109.47028 * 60.00057 * 7 4 3 35 35 H 1.08999 * 109.47177 * 299.99743 * 7 4 3 36 36 H 1.08998 * 109.47136 * 29.98982 * 11 10 8 37 37 H 1.08997 * 109.47384 * 149.99417 * 11 10 8 38 38 H 0.96997 * 119.99949 * 179.97438 * 15 14 12 39 39 H 1.07999 * 120.03317 * 0.02829 * 21 20 10 40 40 H 1.08000 * 119.95987 * 179.70093 * 22 21 20 41 41 H 1.08997 * 109.47146 * 270.23432 * 24 23 22 42 42 H 1.09000 * 109.47057 * 30.22851 * 24 23 22 43 43 H 1.08997 * 109.47241 * 150.23012 * 24 23 22 44 44 H 1.08000 * 119.96877 * 179.74213 * 25 23 22 45 45 H 1.08001 * 120.03903 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3062 0.8844 -1.2268 6 8 4.3072 0.8841 1.2248 7 6 4.2287 3.2175 -0.0015 8 6 5.7227 3.4154 -0.0015 9 8 6.4619 2.4538 -0.0016 10 7 6.2374 4.6610 -0.0025 11 6 5.3486 5.8210 0.1015 12 6 4.9353 6.2624 -1.2788 13 1 5.2987 5.7323 -2.1468 14 6 4.0932 7.3431 -1.4338 15 7 3.7330 7.7287 -2.6385 16 14 3.4652 8.2606 0.0673 17 1 4.4064 9.3582 0.4063 18 1 2.1253 8.8301 -0.2253 19 1 3.3647 7.3228 1.2144 20 6 7.6206 4.8464 -0.1026 21 6 8.2823 4.5248 -1.2806 22 6 9.6486 4.7031 -1.3741 23 6 10.3562 5.2116 -0.3003 24 6 11.8461 5.4108 -0.4081 25 6 9.7003 5.5332 0.8738 26 6 8.3349 5.3519 0.9757 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.8014 3.6794 0.8886 35 1 3.8007 3.6788 -0.8914 36 1 4.4631 5.5499 0.6764 37 1 5.8715 6.6357 0.6022 38 1 3.1403 8.4888 -2.7474 39 1 7.7296 4.1316 -2.1210 40 1 10.1645 4.4487 -2.2882 41 1 12.3580 4.5037 -0.0871 42 1 12.1095 5.6298 -1.4428 43 1 12.1483 6.2429 0.2277 44 1 10.2563 5.9263 1.7121 45 1 7.8232 5.6029 1.8931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263755555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:36 Heat of formation + Delta-G solvation = -83.054416 kcal Electronic energy + Delta-G solvation = -27669.239593 eV Core-core repulsion = 23779.188418 eV Total energy + Delta-G solvation = -3890.051175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.16115 -38.36583 -36.74450 -35.84110 -35.54615 -34.94606 -32.94440 -31.88703 -30.64030 -29.98322 -28.27443 -27.82526 -25.87587 -23.07460 -22.27395 -22.09705 -21.47817 -19.33286 -18.55802 -17.42375 -17.26612 -16.59842 -16.30308 -16.02618 -15.64641 -15.44392 -15.04453 -14.98198 -14.42860 -14.14784 -13.92106 -13.67781 -13.58133 -13.22108 -13.11010 -12.72670 -12.69268 -12.60615 -12.45827 -12.19744 -12.07790 -11.80762 -11.74513 -11.68886 -11.64152 -11.50088 -11.17836 -11.10144 -10.94129 -10.84059 -10.71779 -10.45183 -10.33811 -9.82786 -9.77617 -8.88587 -8.64235 -8.58935 -7.78784 -6.36623 -4.40352 0.03511 1.59359 1.75655 2.83967 2.89602 3.04552 3.10618 3.14509 3.32515 3.87928 4.06113 4.11348 4.14217 4.44557 4.62056 4.73698 4.92075 4.93681 5.04476 5.08385 5.11937 5.24202 5.30636 5.38852 5.44074 5.51045 5.61284 5.68252 5.72117 5.74123 5.77865 5.81763 5.94909 5.98943 6.01660 6.28482 6.36566 6.41449 6.61377 6.85223 6.87006 7.00816 7.24401 7.38022 7.72205 8.17239 8.45373 8.68815 9.20311 10.75414 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.004469 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.712596 B = 6264.490531 C = 8613.154666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.622 4.622 4 S 2.447 3.553 5 O -0.923 6.923 6 O -0.929 6.929 7 C -0.647 4.647 8 C 0.552 3.448 9 O -0.543 6.543 10 N -0.542 5.542 11 C 0.206 3.794 12 C -0.547 4.547 13 H 0.082 0.918 14 C 0.080 3.920 15 N -0.884 5.884 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.264 1.264 20 C 0.161 3.839 21 C -0.095 4.095 22 C -0.111 4.111 23 C -0.099 4.099 24 C -0.109 4.109 25 C -0.114 4.114 26 C -0.120 4.120 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.269 0.731 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 -6.844 6.723 9.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.750 4.750 4 S 2.626 3.374 5 O -0.920 6.920 6 O -0.926 6.926 7 C -0.775 4.775 8 C 0.339 3.661 9 O -0.422 6.422 10 N -0.269 5.269 11 C 0.087 3.913 12 C -0.586 4.586 13 H 0.100 0.900 14 C -0.125 4.125 15 N -0.521 5.521 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.189 1.189 20 C 0.070 3.930 21 C -0.115 4.115 22 C -0.129 4.129 23 C -0.099 4.099 24 C -0.166 4.166 25 C -0.133 4.133 26 C -0.139 4.139 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.174 0.826 35 H 0.193 0.807 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.036 -7.864 6.619 10.331 hybrid contribution -1.282 1.824 0.577 2.302 sum -0.246 -6.040 7.196 9.398 Atomic orbital electron populations 1.21731 0.94012 1.02163 1.02460 1.21260 0.98290 0.91995 1.03919 1.30488 1.26305 1.06236 1.12010 1.07437 0.77337 0.76889 0.75718 1.93563 1.78517 1.74294 1.45636 1.93547 1.78676 1.74427 1.45933 1.30784 1.03279 1.28843 1.14611 1.19018 0.87539 0.83312 0.76224 1.90808 1.60827 1.39386 1.51171 1.45370 1.04669 1.06893 1.69923 1.20041 0.89019 0.83205 0.99083 1.21307 1.30145 1.15544 0.91565 0.89999 1.24849 0.95491 0.96337 0.95812 1.69877 1.34336 1.26540 1.21350 0.86973 0.79125 0.81064 0.83365 1.19654 1.20625 1.18870 1.17501 0.82896 0.99161 0.93421 1.21267 0.94540 0.98942 0.96739 1.20847 0.93484 1.00156 0.98452 1.19849 0.95961 0.99955 0.94176 1.20730 0.91722 1.01722 1.02376 1.20760 0.93649 1.01444 0.97402 1.21138 0.94152 1.00960 0.97674 0.92045 0.92286 0.92121 0.90101 0.90235 0.84860 0.84480 0.82587 0.80717 0.94232 0.94502 0.92123 0.85786 0.85988 0.91513 0.91735 0.91833 0.86086 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.15 5.94 -26.73 -0.16 -1.31 16 3 C -0.62 -6.26 5.81 37.16 0.22 -6.04 16 4 S 2.45 37.28 3.96 -107.50 -0.43 36.86 16 5 O -0.92 -17.42 17.95 -59.52 -1.07 -18.49 16 6 O -0.93 -16.75 17.95 -59.53 -1.07 -17.82 16 7 C -0.65 -10.31 4.95 36.01 0.18 -10.13 16 8 C 0.55 11.40 7.55 -10.99 -0.08 11.31 16 9 O -0.54 -12.55 15.38 2.56 0.04 -12.51 16 10 N -0.54 -11.32 2.51 -114.74 -0.29 -11.60 16 11 C 0.21 4.39 3.95 -5.19 -0.02 4.37 16 12 C -0.55 -13.75 9.71 -34.44 -0.33 -14.08 16 13 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 14 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 15 N -0.88 -24.53 13.96 55.43 0.77 -23.76 16 16 Si 0.87 18.67 27.47 -169.99 -4.67 14.00 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.26 -5.20 6.54 56.52 0.37 -4.83 16 20 C 0.16 3.24 4.75 -83.69 -0.40 2.84 16 21 C -0.10 -1.85 9.55 -39.39 -0.38 -2.23 16 22 C -0.11 -1.80 9.69 -39.61 -0.38 -2.18 16 23 C -0.10 -1.46 5.88 -104.59 -0.62 -2.07 16 24 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 25 C -0.11 -1.71 9.69 -39.61 -0.38 -2.09 16 26 C -0.12 -2.09 9.69 -39.39 -0.38 -2.47 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.14 1.15 8.14 -51.92 -0.42 0.73 16 34 H 0.16 1.92 7.26 -51.92 -0.38 1.55 16 35 H 0.18 2.64 7.91 -51.92 -0.41 2.23 16 36 H 0.04 0.77 5.53 -51.93 -0.29 0.48 16 37 H 0.04 0.77 7.29 -51.93 -0.38 0.40 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 39 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 40 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 45 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -35.54 390.36 -9.89 -45.43 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.96 Total: 5.74 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -2.11 Total: -23.74 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.49 Total: -35.36 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -2.10 Total: -48.81 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.67 Total: 14.00 kcal Atomic # 16 Polarization: 37.28 SS G_CDS: -0.43 Total: 36.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.54 -9.89 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263755555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.620 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds