Wall clock time and date at job start Tue Mar 31 2020 23:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46930 * 2 1 4 4 S 1.81408 * 109.46837 * 180.02562 * 3 2 1 5 5 O 1.42100 * 108.57766 * 65.51233 * 4 3 2 6 6 O 1.42099 * 108.57682 * 294.48227 * 4 3 2 7 7 C 1.81408 * 101.92010 * 179.97438 * 4 3 2 8 8 C 1.50700 * 109.46740 * 179.97438 * 7 4 3 9 9 O 1.21286 * 120.00350 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99602 * 179.97438 * 8 7 4 11 11 C 1.46504 * 120.00240 * 4.74832 * 10 8 7 12 12 C 1.50697 * 109.46906 * 269.99669 * 11 10 8 13 13 H 1.08004 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00353 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00391 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99694 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47341 * 89.99663 * 16 14 12 18 18 H 1.48500 * 109.47361 * 209.99962 * 16 14 12 19 19 H 1.48503 * 109.47252 * 329.99932 * 16 14 12 20 20 C 1.39921 * 120.00051 * 184.73635 * 10 8 7 21 21 C 1.38880 * 120.06637 * 67.90141 * 20 10 8 22 22 C 1.38112 * 119.92591 * 180.29734 * 21 20 10 23 23 C 1.38279 * 120.07227 * 359.46855 * 22 21 20 24 24 C 1.50699 * 119.93129 * 180.27773 * 23 22 21 25 25 C 1.38280 * 120.14278 * 0.50982 * 23 22 21 26 26 C 1.38114 * 120.06964 * 359.76678 * 25 23 22 27 27 H 1.08994 * 109.47065 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47000 * 300.00494 * 1 2 3 29 29 H 1.09003 * 109.46800 * 60.00030 * 1 2 3 30 30 H 1.08998 * 109.47435 * 239.99721 * 2 1 3 31 31 H 1.08999 * 109.47071 * 119.99541 * 2 1 3 32 32 H 1.08995 * 109.47873 * 60.00100 * 3 2 1 33 33 H 1.09003 * 109.47355 * 299.99630 * 3 2 1 34 34 H 1.09006 * 109.47028 * 60.00057 * 7 4 3 35 35 H 1.08999 * 109.47177 * 299.99743 * 7 4 3 36 36 H 1.08998 * 109.47136 * 29.98982 * 11 10 8 37 37 H 1.08997 * 109.47384 * 149.99417 * 11 10 8 38 38 H 0.96997 * 119.99949 * 179.97438 * 15 14 12 39 39 H 1.07999 * 120.03317 * 0.02829 * 21 20 10 40 40 H 1.08000 * 119.95987 * 179.70093 * 22 21 20 41 41 H 1.08997 * 109.47146 * 270.23432 * 24 23 22 42 42 H 1.09000 * 109.47057 * 30.22851 * 24 23 22 43 43 H 1.08997 * 109.47241 * 150.23012 * 24 23 22 44 44 H 1.08000 * 119.96877 * 179.74213 * 25 23 22 45 45 H 1.08001 * 120.03903 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3062 0.8844 -1.2268 6 8 4.3072 0.8841 1.2248 7 6 4.2287 3.2175 -0.0015 8 6 5.7227 3.4154 -0.0015 9 8 6.4619 2.4538 -0.0016 10 7 6.2374 4.6610 -0.0025 11 6 5.3486 5.8210 0.1015 12 6 4.9353 6.2624 -1.2788 13 1 5.2987 5.7323 -2.1468 14 6 4.0932 7.3431 -1.4338 15 7 3.7330 7.7287 -2.6385 16 14 3.4652 8.2606 0.0673 17 1 4.4064 9.3582 0.4063 18 1 2.1253 8.8301 -0.2253 19 1 3.3647 7.3228 1.2144 20 6 7.6206 4.8464 -0.1026 21 6 8.2823 4.5248 -1.2806 22 6 9.6486 4.7031 -1.3741 23 6 10.3562 5.2116 -0.3003 24 6 11.8461 5.4108 -0.4081 25 6 9.7003 5.5332 0.8738 26 6 8.3349 5.3519 0.9757 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.8014 3.6794 0.8886 35 1 3.8007 3.6788 -0.8914 36 1 4.4631 5.5499 0.6764 37 1 5.8715 6.6357 0.6022 38 1 3.1403 8.4888 -2.7474 39 1 7.7296 4.1316 -2.1210 40 1 10.1645 4.4487 -2.2882 41 1 12.3580 4.5037 -0.0871 42 1 12.1095 5.6298 -1.4428 43 1 12.1483 6.2429 0.2277 44 1 10.2563 5.9263 1.7121 45 1 7.8232 5.6029 1.8931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263755555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:35 Heat of formation + Delta-G solvation = -107.418987 kcal Electronic energy + Delta-G solvation = -27670.296120 eV Core-core repulsion = 23779.188418 eV Total energy + Delta-G solvation = -3891.107703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.66153 -39.74372 -38.05224 -37.23121 -37.01998 -35.74950 -34.76293 -33.27412 -31.95290 -31.25799 -30.01919 -28.60928 -27.07734 -24.78894 -23.55741 -23.24449 -22.57255 -20.72272 -19.81991 -19.16924 -18.82860 -18.11550 -17.48938 -17.32271 -16.96428 -16.76645 -16.34158 -16.07149 -15.99667 -15.56963 -15.25737 -14.83543 -14.57349 -14.44591 -14.42268 -14.27632 -13.86280 -13.74527 -13.53936 -13.41437 -13.27268 -13.11530 -13.07484 -13.02630 -12.85231 -12.58314 -12.50627 -12.32079 -12.17757 -12.03766 -11.94451 -11.78871 -11.73463 -11.44376 -11.30793 -10.83434 -10.15388 -9.92148 -9.22307 -8.33167 -6.43369 -1.12883 0.25871 0.42430 1.28942 1.38526 1.41058 1.49822 1.74406 1.88869 2.31492 2.65363 2.76864 2.98299 3.03934 3.34402 3.60350 3.77798 3.89175 3.96466 4.00349 4.03497 4.24106 4.30466 4.41249 4.44133 4.46846 4.48853 4.67648 4.68782 4.75494 4.75509 4.80829 4.89716 5.08331 5.09763 5.12464 5.13247 5.32306 5.34749 5.36591 5.45603 5.62399 5.63406 5.98694 6.09555 6.31454 6.61456 6.89241 7.22138 8.82718 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.004469 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.712596 B = 6264.490531 C = 8613.154666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C -0.584 4.584 4 S 2.436 3.564 5 O -0.977 6.977 6 O -0.966 6.966 7 C -0.650 4.650 8 C 0.535 3.465 9 O -0.580 6.580 10 N -0.545 5.545 11 C 0.211 3.789 12 C -0.547 4.547 13 H 0.028 0.972 14 C 0.024 3.976 15 N -0.938 5.938 16 Si 0.938 3.062 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.225 1.225 20 C 0.118 3.882 21 C -0.130 4.130 22 C -0.118 4.118 23 C -0.094 4.094 24 C -0.106 4.106 25 C -0.109 4.109 26 C -0.129 4.129 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.162 0.838 34 H 0.197 0.803 35 H 0.179 0.821 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.270 0.730 39 H 0.093 0.907 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.161 0.839 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 -5.596 9.864 11.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.718 4.718 4 S 2.621 3.379 5 O -0.974 6.974 6 O -0.963 6.963 7 C -0.777 4.777 8 C 0.324 3.676 9 O -0.462 6.462 10 N -0.271 5.271 11 C 0.091 3.909 12 C -0.586 4.586 13 H 0.047 0.953 14 C -0.176 4.176 15 N -0.577 5.577 16 Si 0.760 3.240 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.147 1.147 20 C 0.028 3.972 21 C -0.149 4.149 22 C -0.137 4.137 23 C -0.094 4.094 24 C -0.162 4.162 25 C -0.127 4.127 26 C -0.149 4.149 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.191 0.809 33 H 0.180 0.820 34 H 0.215 0.785 35 H 0.196 0.804 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.159 0.841 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.179 0.821 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.330 -6.622 9.768 11.806 hybrid contribution -0.973 1.389 -0.507 1.770 sum -0.643 -5.232 9.261 10.657 Atomic orbital electron populations 1.21755 0.91858 1.03264 1.03369 1.21479 1.00018 0.91552 1.03965 1.30238 1.18624 1.07605 1.15306 1.07551 0.80252 0.76119 0.74014 1.93493 1.81399 1.75261 1.47240 1.93488 1.81264 1.74939 1.46607 1.30871 1.00085 1.30159 1.16589 1.19823 0.89500 0.82851 0.75439 1.90768 1.62343 1.40316 1.52733 1.45445 1.05220 1.06808 1.69598 1.19984 0.90288 0.83789 0.96886 1.21380 1.29868 1.15260 0.92047 0.95324 1.25772 0.95510 0.97092 0.99184 1.70047 1.35688 1.27549 1.24370 0.85864 0.78078 0.79961 0.80107 1.19705 1.20546 1.14699 1.17928 0.83087 1.01458 0.94708 1.21290 0.96221 1.01075 0.96355 1.21149 0.92297 1.00009 1.00201 1.20369 0.98197 0.97693 0.93161 1.20814 0.88425 1.03277 1.03711 1.21262 0.92860 0.99955 0.98608 1.21419 0.95392 1.00709 0.97350 0.91030 0.90968 0.91600 0.90755 0.90014 0.80857 0.82026 0.78534 0.80369 0.91104 0.93535 0.92044 0.88858 0.84076 0.89985 0.90781 0.89718 0.82121 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.91 71.98 0.71 -1.12 16 2 C -0.13 -2.31 5.94 30.59 0.18 -2.13 16 3 C -0.58 -10.11 5.81 71.98 0.42 -9.69 16 4 S 2.44 75.22 3.96 -56.49 -0.22 75.00 16 5 O -0.98 -39.30 17.95 -125.75 -2.26 -41.56 16 6 O -0.97 -35.57 17.95 -125.75 -2.26 -37.83 16 7 C -0.65 -20.63 4.95 71.24 0.35 -20.28 16 8 C 0.53 23.01 7.55 87.66 0.66 23.67 16 9 O -0.58 -28.63 15.38 -0.18 0.00 -28.63 16 10 N -0.55 -23.44 2.51 -635.30 -1.59 -25.03 16 11 C 0.21 8.83 3.95 85.63 0.34 9.17 16 12 C -0.55 -28.31 9.71 25.60 0.25 -28.06 16 13 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 14 C 0.02 1.25 5.47 84.65 0.46 1.71 16 15 N -0.94 -53.61 13.96 21.45 0.30 -53.31 16 16 Si 0.94 36.99 27.47 68.60 1.88 38.88 16 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 18 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 19 H -0.22 -7.39 6.54 99.48 0.65 -6.74 16 20 C 0.12 4.96 4.75 38.16 0.18 5.14 16 21 C -0.13 -5.45 9.55 22.39 0.21 -5.23 16 22 C -0.12 -3.93 9.69 22.25 0.22 -3.72 16 23 C -0.09 -2.60 5.88 -19.85 -0.12 -2.72 16 24 C -0.11 -1.93 10.01 71.24 0.71 -1.22 16 25 C -0.11 -3.02 9.69 22.25 0.22 -2.80 16 26 C -0.13 -4.43 9.69 22.39 0.22 -4.21 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.16 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.20 4.33 7.26 -2.39 -0.02 4.31 16 35 H 0.18 5.48 7.91 -2.39 -0.02 5.46 16 36 H 0.07 2.52 5.53 -2.39 -0.01 2.51 16 37 H 0.05 1.87 7.29 -2.39 -0.02 1.86 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.09 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 43 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 44 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 45 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -85.31 390.36 1.78 -83.52 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.92 Total: 30.44 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 5.02 Total: -41.49 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -1.29 Total: -78.34 kcal Atomic # 8 Polarization: -103.50 SS G_CDS: -4.52 Total: -108.01 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 1.88 Total: 38.88 kcal Atomic # 16 Polarization: 75.22 SS G_CDS: -0.22 Total: 75.00 kcal Total: -85.31 1.78 -83.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263755555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.896 kcal (2) G-P(sol) polarization free energy of solvation -85.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds