Wall clock time and date at job start Tue Mar 31 2020 23:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.31883 * 2 1 4 4 C 1.53176 * 109.40025 * 240.21899 * 2 1 3 5 5 H 1.08996 * 109.60319 * 296.98859 * 4 2 1 6 6 C 1.53003 * 109.73891 * 57.39505 * 4 2 1 7 7 S 1.81819 * 108.67679 * 177.22725 * 4 2 1 8 8 O 1.42100 * 108.70162 * 166.57052 * 7 4 2 9 9 O 1.42099 * 108.70474 * 297.92071 * 7 4 2 10 10 C 1.81827 * 101.01704 * 52.31644 * 7 4 2 11 11 C 1.53176 * 108.67956 * 307.68128 * 10 7 4 12 12 N 1.46471 * 109.39942 * 119.77680 * 2 1 3 13 13 C 1.46893 * 111.00181 * 317.13621 * 12 2 1 14 14 C 1.50701 * 109.47291 * 169.40338 * 13 12 2 15 15 C 1.38302 * 119.92698 * 275.52648 * 14 13 12 16 16 C 1.38101 * 120.06716 * 179.71784 * 15 14 13 17 17 C 1.38880 * 119.92949 * 0.58041 * 16 15 14 18 18 O 1.35751 * 120.07013 * 179.68030 * 17 16 15 19 19 C 1.34830 * 117.00380 * 174.28795 * 18 17 16 20 20 H 1.08000 * 119.99588 * 5.07295 * 19 18 17 21 21 C 1.38649 * 120.00025 * 185.07648 * 19 18 17 22 22 N 1.31554 * 120.00447 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99648 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47082 * 60.00333 * 23 21 19 25 25 H 1.48496 * 109.46959 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47117 * 299.99905 * 23 21 19 27 27 C 1.38875 * 119.86011 * 359.69410 * 17 16 15 28 28 C 1.38092 * 119.93378 * 0.02562 * 27 17 16 29 29 H 1.09007 * 109.46687 * 185.44713 * 1 2 3 30 30 H 1.08996 * 109.47322 * 305.44071 * 1 2 3 31 31 H 1.08995 * 109.47397 * 65.44984 * 1 2 3 32 32 H 1.08998 * 109.47338 * 179.59435 * 6 4 2 33 33 H 1.09007 * 109.46908 * 299.59415 * 6 4 2 34 34 H 1.09004 * 109.47053 * 59.58936 * 6 4 2 35 35 H 1.09005 * 109.59855 * 67.44248 * 10 7 4 36 36 H 1.09000 * 109.59774 * 187.76339 * 10 7 4 37 37 H 1.08993 * 109.39739 * 182.76621 * 11 10 7 38 38 H 1.09001 * 109.39893 * 302.51120 * 11 10 7 39 39 H 1.09004 * 109.47460 * 289.40202 * 13 12 2 40 40 H 1.09001 * 109.47498 * 49.40364 * 13 12 2 41 41 H 1.07999 * 119.96603 * 359.97438 * 15 14 13 42 42 H 1.08001 * 120.03848 * 180.27268 * 16 15 14 43 43 H 0.96994 * 120.00104 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.03007 * 180.02562 * 27 17 16 45 45 H 1.08004 * 119.96613 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8906 1.0286 0.0000 4 6 2.0388 -0.7176 -1.2540 5 1 1.7208 -1.7599 -1.2332 6 6 1.4785 -0.0348 -2.5033 7 16 3.8550 -0.6342 -1.2760 8 8 4.3413 -1.5495 -2.2481 9 8 4.2477 0.7296 -1.3461 10 6 4.2523 -1.2750 0.3785 11 6 3.4508 -0.4837 1.4166 12 7 2.0165 -0.6861 1.1991 13 6 1.2433 -0.2888 2.3832 14 6 1.5903 -1.1942 3.5369 15 6 0.9482 -2.4112 3.6762 16 6 1.2681 -3.2458 4.7290 17 6 2.2271 -2.8565 5.6551 18 8 2.5391 -3.6718 6.6947 19 6 3.5594 -3.2886 7.4884 20 1 4.0340 -2.3310 7.3332 21 6 3.9994 -4.1240 8.5037 22 7 3.4218 -5.2907 8.6925 23 14 5.4136 -3.5932 9.6029 24 1 5.0502 -2.3361 10.3048 25 1 5.6899 -4.6565 10.6020 26 1 6.6253 -3.3655 8.7752 27 6 2.8659 -1.6314 5.5155 28 6 2.5458 -0.8039 4.4574 29 1 -0.3633 -1.0231 0.0976 30 1 -0.3634 0.5959 0.8372 31 1 -0.3634 0.4270 -0.9347 32 1 1.8489 -0.5442 -3.3929 33 1 0.3896 -0.0809 -2.4851 34 1 1.7978 1.0073 -2.5219 35 1 3.9843 -2.3300 0.4361 36 1 5.3190 -1.1577 0.5696 37 1 3.7171 -0.8254 2.4168 38 1 3.6850 0.5768 1.3233 39 1 1.4835 0.7416 2.6452 40 1 0.1783 -0.3696 2.1656 41 1 0.1988 -2.7110 2.9586 42 1 0.7695 -4.1979 4.8349 43 1 3.7294 -5.8749 9.4030 44 1 3.6124 -1.3261 6.2339 45 1 3.0420 0.1492 4.3486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265502708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:38 Heat of formation + Delta-G solvation = -57.948644 kcal Electronic energy + Delta-G solvation = -27727.293583 eV Core-core repulsion = 23838.331076 eV Total energy + Delta-G solvation = -3888.962508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 14.53 seconds Orbital eigenvalues (eV) -39.77266 -38.76828 -37.15724 -36.58580 -36.23143 -34.52880 -32.50787 -32.00191 -30.32630 -29.93287 -28.38872 -26.12622 -25.31406 -24.39765 -22.55635 -21.94426 -20.91115 -20.18515 -19.02141 -18.05105 -17.23225 -16.96081 -16.76063 -16.36581 -15.94969 -15.54043 -14.92265 -14.64175 -14.44897 -14.20440 -13.94810 -13.80640 -13.63263 -13.52720 -13.20997 -12.88113 -12.74403 -12.62175 -12.34829 -12.31458 -12.23292 -12.19708 -12.09136 -11.96413 -11.78455 -11.60376 -11.36620 -11.21041 -10.84360 -10.74724 -10.67849 -10.61055 -10.48467 -10.16241 -9.40836 -8.89116 -8.58869 -8.24557 -7.26507 -6.50983 -4.10202 -0.18599 2.12612 2.16939 2.44929 3.08804 3.09631 3.13006 3.37646 3.44986 3.83040 3.91520 4.11407 4.34896 4.46468 4.53358 4.61996 4.77906 4.89201 4.94486 5.00458 5.04216 5.16064 5.21076 5.24103 5.30298 5.36742 5.40606 5.54941 5.57794 5.63034 5.67016 5.73507 5.75990 5.82491 5.92436 6.13906 6.33301 6.61872 6.70537 6.78741 6.84781 7.01052 7.18737 7.29932 7.37308 7.74684 7.93535 8.94413 9.63652 10.66738 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.002647 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.870315 B =10576.671596 C =11313.059342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.096 3.904 3 H 0.062 0.938 4 C -0.553 4.553 5 H 0.147 0.853 6 C -0.142 4.142 7 S 2.405 3.595 8 O -0.945 6.945 9 O -0.941 6.941 10 C -0.591 4.591 11 C 0.060 3.940 12 N -0.546 5.546 13 C 0.112 3.888 14 C -0.186 4.186 15 C -0.049 4.049 16 C -0.195 4.195 17 C 0.157 3.843 18 O -0.176 6.176 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.235 4.235 28 C -0.068 4.068 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.271 0.729 44 H 0.126 0.874 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 10.975 -17.566 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 H 0.079 0.921 4 C -0.663 4.663 5 H 0.165 0.835 6 C -0.200 4.200 7 S 2.589 3.411 8 O -0.942 6.942 9 O -0.938 6.938 10 C -0.721 4.721 11 C -0.069 4.069 12 N -0.271 5.271 13 C -0.013 4.013 14 C -0.188 4.188 15 C -0.068 4.068 16 C -0.214 4.214 17 C 0.103 3.897 18 O -0.079 6.079 19 C -0.470 4.470 20 H 0.109 0.891 21 C -0.164 4.164 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.254 4.254 28 C -0.087 4.087 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.131 0.869 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.872 10.359 -18.077 21.192 hybrid contribution 0.521 0.614 1.365 1.585 sum -3.352 10.973 -16.712 20.272 Atomic orbital electron populations 1.22039 0.92772 1.03448 1.02446 1.21315 0.97780 0.95010 0.87256 0.92070 1.30051 1.24123 1.09929 1.02227 0.83514 1.21680 1.03690 1.00874 0.93803 1.08480 0.78730 0.75782 0.78077 1.93580 1.78144 1.65379 1.57109 1.93566 1.80624 1.33270 1.86378 1.30174 1.09458 1.12808 1.19690 1.21820 0.86586 0.97498 1.00981 1.61336 1.02989 1.59428 1.03383 1.20932 0.97982 0.95658 0.86751 1.19038 1.03471 0.97785 0.98493 1.20428 0.97848 0.92739 0.95783 1.20234 1.02815 1.01613 0.96748 1.19411 0.92834 0.89754 0.87723 1.83979 1.47147 1.43722 1.33057 1.21275 1.10364 1.04136 1.11193 0.89107 1.25291 0.98677 0.95001 0.97457 1.70021 1.39964 1.08628 1.30965 0.85788 0.80014 0.78449 0.79236 1.19477 1.20224 1.19469 1.21119 1.06190 0.96233 1.01860 1.20622 0.96068 0.97936 0.94028 0.90966 0.91507 0.91381 0.91005 0.89595 0.90859 0.83806 0.84571 0.86920 0.92873 0.94308 0.89257 0.87029 0.86581 0.91879 0.85626 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 275. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.84 37.16 0.29 -0.74 16 2 C 0.10 0.81 2.04 -67.85 -0.14 0.67 16 3 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 4 C -0.55 -4.43 2.78 -26.64 -0.07 -4.50 16 5 H 0.15 1.03 8.14 -51.93 -0.42 0.60 16 6 C -0.14 -0.95 8.78 37.16 0.33 -0.63 16 7 S 2.41 24.80 4.73 -107.50 -0.51 24.29 16 8 O -0.95 -12.69 18.11 -57.81 -1.05 -13.74 16 9 O -0.94 -12.14 18.07 -57.81 -1.04 -13.19 16 10 C -0.59 -5.67 6.58 37.25 0.25 -5.43 16 11 C 0.06 0.64 5.26 -3.96 -0.02 0.62 16 12 N -0.55 -5.65 4.33 -228.56 -0.99 -6.64 16 13 C 0.11 1.25 4.55 -4.98 -0.02 1.23 16 14 C -0.19 -2.78 4.73 -104.58 -0.49 -3.27 16 15 C -0.05 -0.80 9.71 -39.61 -0.38 -1.18 16 16 C -0.19 -3.88 9.99 -39.39 -0.39 -4.27 16 17 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 18 O -0.18 -4.88 9.76 0.05 0.00 -4.88 16 19 C -0.39 -10.70 9.49 30.88 0.29 -10.41 16 20 H 0.09 2.27 5.21 -52.49 -0.27 2.00 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 23 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.23 -4.77 9.17 -39.40 -0.36 -5.13 16 28 C -0.07 -1.11 7.99 -39.61 -0.32 -1.43 16 29 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.07 0.44 6.49 -51.93 -0.34 0.11 16 31 H 0.07 0.37 6.10 -51.93 -0.32 0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.43 6.30 -51.93 -0.33 0.11 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.14 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.14 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.11 1.38 5.50 -51.93 -0.29 1.10 16 38 H 0.05 0.52 7.93 -51.93 -0.41 0.11 16 39 H 0.04 0.41 8.03 -51.93 -0.42 -0.01 16 40 H 0.09 0.87 5.59 -51.93 -0.29 0.58 16 41 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.13 2.59 5.64 -52.48 -0.30 2.29 16 45 H 0.10 1.44 8.03 -52.48 -0.42 1.02 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -33.82 366.60 -10.04 -43.86 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.31 Total: 3.89 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: -1.41 Total: -30.11 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: -0.23 Total: -30.68 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -2.09 Total: -31.80 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 24.80 SS G_CDS: -0.51 Total: 24.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.82 -10.04 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265502708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.088 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.53 seconds