Wall clock time and date at job start Tue Mar 31 2020 23:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.31883 * 2 1 4 4 C 1.53176 * 109.40025 * 240.21899 * 2 1 3 5 5 H 1.08996 * 109.60319 * 296.98859 * 4 2 1 6 6 C 1.53003 * 109.73891 * 57.39505 * 4 2 1 7 7 S 1.81819 * 108.67679 * 177.22725 * 4 2 1 8 8 O 1.42100 * 108.70162 * 166.57052 * 7 4 2 9 9 O 1.42099 * 108.70474 * 297.92071 * 7 4 2 10 10 C 1.81827 * 101.01704 * 52.31644 * 7 4 2 11 11 C 1.53176 * 108.67956 * 307.68128 * 10 7 4 12 12 N 1.46471 * 109.39942 * 119.77680 * 2 1 3 13 13 C 1.46893 * 111.00181 * 317.13621 * 12 2 1 14 14 C 1.50701 * 109.47291 * 169.40338 * 13 12 2 15 15 C 1.38302 * 119.92698 * 275.52648 * 14 13 12 16 16 C 1.38101 * 120.06716 * 179.71784 * 15 14 13 17 17 C 1.38880 * 119.92949 * 0.58041 * 16 15 14 18 18 O 1.35751 * 120.07013 * 179.68030 * 17 16 15 19 19 C 1.34830 * 117.00380 * 174.28795 * 18 17 16 20 20 H 1.08000 * 119.99588 * 5.07295 * 19 18 17 21 21 C 1.38649 * 120.00025 * 185.07648 * 19 18 17 22 22 N 1.31554 * 120.00447 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99648 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47082 * 60.00333 * 23 21 19 25 25 H 1.48496 * 109.46959 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47117 * 299.99905 * 23 21 19 27 27 C 1.38875 * 119.86011 * 359.69410 * 17 16 15 28 28 C 1.38092 * 119.93378 * 0.02562 * 27 17 16 29 29 H 1.09007 * 109.46687 * 185.44713 * 1 2 3 30 30 H 1.08996 * 109.47322 * 305.44071 * 1 2 3 31 31 H 1.08995 * 109.47397 * 65.44984 * 1 2 3 32 32 H 1.08998 * 109.47338 * 179.59435 * 6 4 2 33 33 H 1.09007 * 109.46908 * 299.59415 * 6 4 2 34 34 H 1.09004 * 109.47053 * 59.58936 * 6 4 2 35 35 H 1.09005 * 109.59855 * 67.44248 * 10 7 4 36 36 H 1.09000 * 109.59774 * 187.76339 * 10 7 4 37 37 H 1.08993 * 109.39739 * 182.76621 * 11 10 7 38 38 H 1.09001 * 109.39893 * 302.51120 * 11 10 7 39 39 H 1.09004 * 109.47460 * 289.40202 * 13 12 2 40 40 H 1.09001 * 109.47498 * 49.40364 * 13 12 2 41 41 H 1.07999 * 119.96603 * 359.97438 * 15 14 13 42 42 H 1.08001 * 120.03848 * 180.27268 * 16 15 14 43 43 H 0.96994 * 120.00104 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.03007 * 180.02562 * 27 17 16 45 45 H 1.08004 * 119.96613 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8906 1.0286 0.0000 4 6 2.0388 -0.7176 -1.2540 5 1 1.7208 -1.7599 -1.2332 6 6 1.4785 -0.0348 -2.5033 7 16 3.8550 -0.6342 -1.2760 8 8 4.3413 -1.5495 -2.2481 9 8 4.2477 0.7296 -1.3461 10 6 4.2523 -1.2750 0.3785 11 6 3.4508 -0.4837 1.4166 12 7 2.0165 -0.6861 1.1991 13 6 1.2433 -0.2888 2.3832 14 6 1.5903 -1.1942 3.5369 15 6 0.9482 -2.4112 3.6762 16 6 1.2681 -3.2458 4.7290 17 6 2.2271 -2.8565 5.6551 18 8 2.5391 -3.6718 6.6947 19 6 3.5594 -3.2886 7.4884 20 1 4.0340 -2.3310 7.3332 21 6 3.9994 -4.1240 8.5037 22 7 3.4218 -5.2907 8.6925 23 14 5.4136 -3.5932 9.6029 24 1 5.0502 -2.3361 10.3048 25 1 5.6899 -4.6565 10.6020 26 1 6.6253 -3.3655 8.7752 27 6 2.8659 -1.6314 5.5155 28 6 2.5458 -0.8039 4.4574 29 1 -0.3633 -1.0231 0.0976 30 1 -0.3634 0.5959 0.8372 31 1 -0.3634 0.4270 -0.9347 32 1 1.8489 -0.5442 -3.3929 33 1 0.3896 -0.0809 -2.4851 34 1 1.7978 1.0073 -2.5219 35 1 3.9843 -2.3300 0.4361 36 1 5.3190 -1.1577 0.5696 37 1 3.7171 -0.8254 2.4168 38 1 3.6850 0.5768 1.3233 39 1 1.4835 0.7416 2.6452 40 1 0.1783 -0.3696 2.1656 41 1 0.1988 -2.7110 2.9586 42 1 0.7695 -4.1979 4.8349 43 1 3.7294 -5.8749 9.4030 44 1 3.6124 -1.3261 6.2339 45 1 3.0420 0.1492 4.3486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265502708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:37 Heat of formation + Delta-G solvation = -82.934384 kcal Electronic energy + Delta-G solvation = -27728.377046 eV Core-core repulsion = 23838.331076 eV Total energy + Delta-G solvation = -3890.045970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97685 -40.04504 -38.22498 -37.92677 -37.14047 -35.31886 -34.30249 -33.02974 -31.78560 -31.00823 -29.21882 -27.58247 -26.54046 -25.35921 -23.71378 -23.18812 -22.03829 -21.16727 -19.83359 -19.80362 -18.80907 -17.89310 -17.59754 -17.18601 -16.83708 -16.54794 -16.35162 -16.21845 -15.66282 -15.48407 -15.33326 -14.85687 -14.61167 -14.51176 -14.32756 -14.13683 -13.80778 -13.58049 -13.39076 -13.29791 -13.19694 -13.11617 -13.09050 -12.91356 -12.80271 -12.66678 -12.49320 -12.30148 -12.17910 -12.14436 -12.00291 -11.73842 -11.48528 -11.14285 -10.90297 -10.76355 -9.72557 -9.39309 -8.87958 -8.46761 -6.14706 -0.97682 0.63766 0.70144 1.34540 1.44722 1.50405 1.68766 2.17542 2.53636 2.63339 2.90066 3.03723 3.25270 3.41661 3.56097 3.64621 3.79519 3.92811 4.00591 4.08784 4.13672 4.23134 4.26910 4.42044 4.43097 4.53181 4.64242 4.65396 4.71360 4.80043 4.83379 4.87597 4.89583 5.00274 5.06713 5.13464 5.16890 5.21441 5.34091 5.44294 5.61151 5.74778 5.77158 5.95972 6.03834 6.06622 6.28095 6.98339 7.80487 8.76361 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.002647 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.870315 B =10576.671596 C =11313.059342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.093 3.907 3 H 0.066 0.934 4 C -0.534 4.534 5 H 0.162 0.838 6 C -0.149 4.149 7 S 2.406 3.594 8 O -0.983 6.983 9 O -0.971 6.971 10 C -0.590 4.590 11 C 0.054 3.946 12 N -0.550 5.550 13 C 0.112 3.888 14 C -0.154 4.154 15 C -0.041 4.041 16 C -0.207 4.207 17 C 0.114 3.886 18 O -0.235 6.235 19 C -0.412 4.412 20 H 0.101 0.899 21 C -0.023 4.023 22 N -0.922 5.922 23 Si 1.016 2.984 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.258 1.258 27 C -0.245 4.245 28 C -0.064 4.064 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.149 0.851 42 H 0.109 0.891 43 H 0.272 0.728 44 H 0.115 0.885 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 13.638 -19.811 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 H 0.084 0.916 4 C -0.647 4.647 5 H 0.180 0.820 6 C -0.208 4.208 7 S 2.594 3.406 8 O -0.980 6.980 9 O -0.969 6.969 10 C -0.721 4.721 11 C -0.075 4.075 12 N -0.276 5.276 13 C -0.014 4.014 14 C -0.155 4.155 15 C -0.060 4.060 16 C -0.227 4.227 17 C 0.064 3.936 18 O -0.141 6.141 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.560 5.560 23 Si 0.835 3.165 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.183 1.183 27 C -0.264 4.264 28 C -0.082 4.082 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.167 0.833 42 H 0.127 0.873 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.040 13.073 -20.390 24.740 hybrid contribution 0.692 -0.019 1.703 1.839 sum -4.348 13.054 -18.687 23.206 Atomic orbital electron populations 1.22098 0.90943 1.03934 1.03890 1.21449 0.99136 0.94950 0.86039 0.91571 1.29915 1.20496 1.11235 1.03054 0.82004 1.21825 1.05190 1.00751 0.92996 1.08279 0.80073 0.74547 0.77673 1.93530 1.79844 1.66005 1.58653 1.93522 1.82028 1.34519 1.86800 1.30151 1.10232 1.12894 1.18788 1.21856 0.87131 0.98246 1.00223 1.61241 1.02557 1.60107 1.03683 1.21019 0.99610 0.95289 0.85477 1.19570 1.00380 0.97142 0.98402 1.20839 0.98067 0.92340 0.94722 1.20489 1.02390 1.02332 0.97464 1.19977 0.94730 0.90776 0.88162 1.83941 1.48751 1.46021 1.35425 1.21755 1.10734 1.04745 1.11615 0.88156 1.26553 1.01598 0.94918 0.98952 1.70171 1.42705 1.10491 1.32618 0.84684 0.76330 0.78384 0.77067 1.18109 1.19737 1.18257 1.21209 1.06036 0.96055 1.03076 1.20978 0.96106 0.98488 0.92652 0.90782 0.90742 0.89603 0.90868 0.87142 0.90820 0.83389 0.83677 0.88499 0.91819 0.92571 0.86697 0.83335 0.87322 0.91889 0.86766 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 7.84 71.98 0.56 -0.67 16 2 C 0.09 1.14 2.04 45.06 0.09 1.23 16 3 H 0.07 0.81 7.93 -2.39 -0.02 0.79 16 4 C -0.53 -6.63 2.78 30.65 0.09 -6.54 16 5 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 6 C -0.15 -1.45 8.78 71.98 0.63 -0.82 16 7 S 2.41 45.57 4.73 -56.49 -0.27 45.30 16 8 O -0.98 -25.70 18.11 -127.39 -2.31 -28.01 16 9 O -0.97 -23.72 18.07 -127.39 -2.30 -26.02 16 10 C -0.59 -10.19 6.58 72.04 0.47 -9.71 16 11 C 0.05 0.99 5.26 86.44 0.45 1.45 16 12 N -0.55 -8.94 4.33 -877.04 -3.79 -12.74 16 13 C 0.11 1.90 4.55 85.56 0.39 2.29 16 14 C -0.15 -4.01 4.73 -19.83 -0.09 -4.11 16 15 C -0.04 -1.22 9.71 22.25 0.22 -1.01 16 16 C -0.21 -8.33 9.99 22.39 0.22 -8.11 16 17 C 0.11 5.45 6.65 22.58 0.15 5.60 16 18 O -0.23 -13.92 9.76 -22.75 -0.22 -14.14 16 19 C -0.41 -23.72 9.49 67.92 0.64 -23.07 16 20 H 0.10 5.27 5.21 -2.91 -0.02 5.25 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 22 N -0.92 -56.36 13.67 21.61 0.30 -56.07 16 23 Si 1.02 42.47 29.55 68.60 2.03 44.50 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 27 C -0.24 -10.02 9.17 22.39 0.21 -9.82 16 28 C -0.06 -1.94 7.99 22.25 0.18 -1.76 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.53 6.49 -2.39 -0.02 0.52 16 31 H 0.09 0.44 6.10 -2.39 -0.01 0.42 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 0.57 6.30 -2.38 -0.02 0.56 16 34 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.15 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.10 2.10 5.50 -2.39 -0.01 2.09 16 38 H 0.06 1.04 7.93 -2.39 -0.02 1.02 16 39 H 0.06 0.84 8.03 -2.39 -0.02 0.82 16 40 H 0.12 1.50 5.59 -2.39 -0.01 1.49 16 41 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 42 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 43 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.11 4.85 5.64 -2.91 -0.02 4.84 16 45 H 0.14 3.28 8.03 -2.91 -0.02 3.25 16 Total: -1.00 -79.76 366.60 -0.89 -80.64 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 1.00 Total: 22.40 kcal Atomic # 6 Polarization: -60.54 SS G_CDS: 4.68 Total: -55.86 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -3.50 Total: -68.80 kcal Atomic # 8 Polarization: -63.35 SS G_CDS: -4.83 Total: -68.18 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 45.57 SS G_CDS: -0.27 Total: 45.30 kcal Total: -79.76 -0.89 -80.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265502708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.292 kcal (2) G-P(sol) polarization free energy of solvation -79.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds