Wall clock time and date at job start Tue Mar 31 2020 23:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.39696 * 2 1 4 4 C 1.53173 * 109.40304 * 240.17372 * 2 1 3 5 5 H 1.09001 * 109.60329 * 57.56092 * 4 2 1 6 6 C 1.52995 * 109.60390 * 297.24008 * 4 2 1 7 7 S 1.81819 * 108.68132 * 177.31768 * 4 2 1 8 8 O 1.42101 * 108.70368 * 166.56947 * 7 4 2 9 9 O 1.42095 * 108.70346 * 297.92749 * 7 4 2 10 10 C 1.81823 * 101.01735 * 52.31872 * 7 4 2 11 11 C 1.53186 * 108.67566 * 307.68468 * 10 7 4 12 12 N 1.46467 * 109.90020 * 62.63495 * 11 10 7 13 13 C 1.46903 * 110.99975 * 162.99830 * 12 11 10 14 14 C 1.50700 * 109.47083 * 297.99658 * 13 12 11 15 15 C 1.38301 * 119.92843 * 269.72209 * 14 13 12 16 16 C 1.38101 * 120.07062 * 179.72868 * 15 14 13 17 17 C 1.38887 * 119.92752 * 0.56867 * 16 15 14 18 18 O 1.35747 * 120.07059 * 179.68783 * 17 16 15 19 19 C 1.34825 * 116.99928 * 185.65859 * 18 17 16 20 20 H 1.07992 * 120.00496 * 355.69111 * 19 18 17 21 21 C 1.38662 * 119.99972 * 175.68855 * 19 18 17 22 22 N 1.31553 * 119.99851 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99791 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47499 * 89.99706 * 23 21 19 25 25 H 1.48499 * 109.46951 * 209.99732 * 23 21 19 26 26 H 1.48501 * 109.47080 * 329.99335 * 23 21 19 27 27 C 1.38879 * 119.85982 * 359.70409 * 17 16 15 28 28 C 1.38100 * 119.93455 * 0.02562 * 27 17 16 29 29 H 1.08995 * 109.47034 * 188.81111 * 1 2 3 30 30 H 1.08994 * 109.47301 * 308.81443 * 1 2 3 31 31 H 1.09003 * 109.46736 * 68.81886 * 1 2 3 32 32 H 1.09001 * 109.47087 * 59.99993 * 6 4 2 33 33 H 1.09005 * 109.47598 * 179.97438 * 6 4 2 34 34 H 1.08996 * 109.47714 * 299.99871 * 6 4 2 35 35 H 1.09002 * 109.60395 * 67.43823 * 10 7 4 36 36 H 1.08996 * 109.60394 * 187.92702 * 10 7 4 37 37 H 1.09000 * 109.39594 * 182.76964 * 11 10 7 38 38 H 1.08997 * 109.39877 * 302.50087 * 11 10 7 39 39 H 1.09002 * 109.47242 * 57.99500 * 13 12 11 40 40 H 1.09002 * 109.47551 * 177.99349 * 13 12 11 41 41 H 1.08001 * 119.96965 * 359.97438 * 15 14 13 42 42 H 1.08000 * 120.04003 * 180.27901 * 16 15 14 43 43 H 0.97004 * 119.99554 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.03294 * 179.97438 * 27 17 16 45 45 H 1.08000 * 119.96802 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0282 0.0000 4 6 2.0389 -0.7186 -1.2534 5 1 1.6409 -0.2293 -2.1424 6 6 1.5872 -2.1801 -1.2262 7 16 3.8551 -0.6376 -1.2741 8 8 4.3411 -1.5538 -2.2456 9 8 4.2497 0.7257 -1.3441 10 6 4.2505 -1.2785 0.3808 11 6 3.4491 -0.4858 1.4182 12 7 2.0148 -0.6864 1.1996 13 6 1.2412 -0.2879 2.3831 14 6 1.6353 -1.1500 3.5546 15 6 0.9579 -2.3302 3.8015 16 6 1.3202 -3.1254 4.8710 17 6 2.3584 -2.7328 5.7059 18 8 2.7128 -3.5090 6.7616 19 6 3.6473 -3.0147 7.5983 20 1 4.1282 -2.0738 7.3755 21 6 3.9910 -3.7145 8.7450 22 7 4.9033 -3.2324 9.5611 23 14 3.1597 -5.3424 9.1301 24 1 3.9362 -6.4513 8.5199 25 1 3.0996 -5.5315 10.6018 26 1 1.7824 -5.3384 8.5750 27 6 3.0329 -1.5443 5.4585 28 6 2.6695 -0.7563 4.3842 29 1 -0.3633 -1.0155 0.1574 30 1 -0.3633 0.6441 0.8007 31 1 -0.3633 0.3713 -0.9583 32 1 0.4983 -2.2234 -1.2008 33 1 1.9500 -2.6893 -2.1191 34 1 1.9910 -2.6688 -0.3396 35 1 3.9810 -2.3331 0.4386 36 1 5.3167 -1.1599 0.5738 37 1 3.7143 -0.8276 2.4187 38 1 3.6848 0.5742 1.3248 39 1 1.4458 0.7571 2.6160 40 1 0.1774 -0.4135 2.1811 41 1 0.1472 -2.6324 3.1551 42 1 0.7938 -4.0491 5.0607 43 1 5.1439 -3.7221 10.3631 44 1 3.8403 -1.2362 6.1061 45 1 3.1934 0.1682 4.1916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265502712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:56 Heat of formation + Delta-G solvation = -55.251096 kcal Electronic energy + Delta-G solvation = -27958.930641 eV Core-core repulsion = 24070.085108 eV Total energy + Delta-G solvation = -3888.845533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -39.92646 -38.94047 -37.23079 -36.78423 -36.22778 -34.14005 -32.58027 -32.24457 -30.41193 -30.04070 -28.43571 -26.24233 -25.23941 -24.19933 -23.13337 -22.09842 -20.73461 -20.06804 -18.72898 -17.97199 -17.39537 -17.27876 -16.70535 -16.23728 -15.91372 -15.77448 -15.02604 -14.95735 -14.53581 -14.15286 -13.87005 -13.73136 -13.62122 -13.55213 -13.01726 -12.97131 -12.79813 -12.50185 -12.40180 -12.35618 -12.31612 -12.22508 -12.15172 -11.99401 -11.90770 -11.70932 -11.38269 -11.23210 -10.88459 -10.83379 -10.69898 -10.65579 -10.22479 -10.14878 -9.47285 -8.94433 -8.60922 -8.34143 -7.42292 -6.48948 -4.15889 -0.18652 1.99993 2.05349 2.40652 3.17238 3.20617 3.34529 3.39495 3.43460 3.79666 4.10957 4.17241 4.28836 4.43643 4.52807 4.59277 4.75739 4.77907 4.89281 5.00350 5.00931 5.03711 5.18280 5.22751 5.32735 5.41137 5.49286 5.51824 5.52420 5.61118 5.67612 5.70228 5.75495 5.85425 5.98478 6.02872 6.23170 6.46379 6.65090 6.71853 6.74477 6.98017 7.15076 7.19519 7.51653 7.71243 7.95613 8.85947 9.47473 10.58449 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.002715 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.232151 B =10310.164759 C =10754.733875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.094 3.906 3 H 0.062 0.938 4 C -0.551 4.551 5 H 0.137 0.863 6 C -0.132 4.132 7 S 2.404 3.596 8 O -0.943 6.943 9 O -0.944 6.944 10 C -0.589 4.589 11 C 0.056 3.944 12 N -0.542 5.542 13 C 0.112 3.888 14 C -0.177 4.177 15 C -0.052 4.052 16 C -0.194 4.194 17 C 0.163 3.837 18 O -0.216 6.216 19 C -0.391 4.391 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.877 5.877 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.221 4.221 28 C -0.070 4.070 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.280 0.720 44 H 0.133 0.867 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 5.598 -19.479 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 H 0.079 0.921 4 C -0.661 4.661 5 H 0.154 0.846 6 C -0.189 4.189 7 S 2.588 3.412 8 O -0.940 6.940 9 O -0.941 6.941 10 C -0.720 4.720 11 C -0.073 4.073 12 N -0.267 5.267 13 C -0.014 4.014 14 C -0.179 4.179 15 C -0.071 4.071 16 C -0.213 4.213 17 C 0.110 3.890 18 O -0.120 6.120 19 C -0.467 4.467 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.240 4.240 28 C -0.089 4.089 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.134 0.866 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.150 0.850 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.769 5.162 -19.958 22.030 hybrid contribution -0.352 -0.014 1.013 1.072 sum -8.121 5.148 -18.945 21.245 Atomic orbital electron populations 1.21974 0.92731 1.03409 1.02258 1.21311 0.97764 0.94835 0.87575 0.92069 1.30053 1.24345 1.06206 1.05528 0.84553 1.21560 1.03845 0.89949 1.03593 1.08501 0.78806 0.75657 0.78255 1.93575 1.78072 1.65270 1.57091 1.93576 1.80633 1.33465 1.86468 1.30155 1.09458 1.12779 1.19604 1.21907 0.86572 0.97623 1.01190 1.61316 1.03011 1.59227 1.03187 1.20919 0.97918 0.95943 0.86594 1.19108 1.01445 0.98492 0.98822 1.20438 0.98162 0.93105 0.95417 1.20226 1.00164 1.02518 0.98407 1.19151 0.92235 0.89630 0.87961 1.83569 1.53950 1.41829 1.32679 1.20765 1.15367 1.08529 1.01991 0.87609 1.24477 0.95953 0.99301 0.94226 1.69643 1.29856 1.39252 1.12742 0.86175 0.81022 0.82273 0.77409 1.19835 1.20766 1.18328 1.21246 1.04612 0.97045 1.01146 1.20676 0.95813 0.98202 0.94181 0.90688 0.91641 0.91840 0.90447 0.91380 0.89813 0.83767 0.84556 0.86645 0.92848 0.94205 0.89281 0.86835 0.86568 0.90960 0.84986 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 7.44 37.16 0.28 -0.66 16 2 C 0.09 0.75 2.17 -67.86 -0.15 0.61 16 3 H 0.06 0.50 7.93 -51.93 -0.41 0.08 16 4 C -0.55 -4.19 2.88 -26.64 -0.08 -4.27 16 5 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.13 -0.96 8.52 37.15 0.32 -0.64 16 7 S 2.40 24.07 4.89 -107.50 -0.53 23.54 16 8 O -0.94 -12.24 17.71 -57.81 -1.02 -13.26 16 9 O -0.94 -12.29 18.10 -57.81 -1.05 -13.34 16 10 C -0.59 -5.37 6.19 37.25 0.23 -5.14 16 11 C 0.06 0.57 5.22 -3.96 -0.02 0.55 16 12 N -0.54 -5.17 3.51 -228.56 -0.80 -5.97 16 13 C 0.11 1.16 4.52 -4.97 -0.02 1.14 16 14 C -0.18 -2.47 4.82 -104.57 -0.50 -2.97 16 15 C -0.05 -0.78 9.69 -39.61 -0.38 -1.16 16 16 C -0.19 -3.52 9.99 -39.39 -0.39 -3.91 16 17 C 0.16 3.51 6.65 -39.10 -0.26 3.25 16 18 O -0.22 -5.45 8.59 0.07 0.00 -5.45 16 19 C -0.39 -10.64 9.95 30.89 0.31 -10.34 16 20 H 0.11 2.94 5.44 -52.49 -0.29 2.65 16 21 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 22 N -0.88 -24.76 13.96 55.48 0.77 -23.98 16 23 Si 0.91 21.09 28.62 -169.99 -4.86 16.23 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.22 -4.38 9.17 -39.39 -0.36 -4.74 16 28 C -0.07 -1.10 7.69 -39.61 -0.30 -1.41 16 29 H 0.07 0.49 6.92 -51.93 -0.36 0.13 16 30 H 0.06 0.40 6.77 -51.93 -0.35 0.05 16 31 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.08 0.48 6.72 -51.93 -0.35 0.14 16 33 H 0.07 0.48 7.97 -51.93 -0.41 0.07 16 34 H 0.08 0.65 6.48 -51.93 -0.34 0.32 16 35 H 0.14 1.21 7.38 -51.93 -0.38 0.82 16 36 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.12 1.35 4.94 -51.93 -0.26 1.09 16 38 H 0.05 0.51 7.93 -51.93 -0.41 0.10 16 39 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.09 0.80 5.75 -51.93 -0.30 0.50 16 41 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 43 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 45 H 0.11 1.45 7.82 -52.49 -0.41 1.04 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -32.67 361.70 -9.71 -42.37 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.23 Total: 2.46 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -1.44 Total: -28.05 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: -0.03 Total: -29.95 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -2.07 Total: -32.05 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.86 Total: 16.23 kcal Atomic # 16 Polarization: 24.07 SS G_CDS: -0.53 Total: 23.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.67 -9.71 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265502712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.878 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds