Wall clock time and date at job start Tue Mar 31 2020 23:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.39696 * 2 1 4 4 C 1.53173 * 109.40304 * 240.17372 * 2 1 3 5 5 H 1.09001 * 109.60329 * 57.56092 * 4 2 1 6 6 C 1.52995 * 109.60390 * 297.24008 * 4 2 1 7 7 S 1.81819 * 108.68132 * 177.31768 * 4 2 1 8 8 O 1.42101 * 108.70368 * 166.56947 * 7 4 2 9 9 O 1.42095 * 108.70346 * 297.92749 * 7 4 2 10 10 C 1.81823 * 101.01735 * 52.31872 * 7 4 2 11 11 C 1.53186 * 108.67566 * 307.68468 * 10 7 4 12 12 N 1.46467 * 109.90020 * 62.63495 * 11 10 7 13 13 C 1.46903 * 110.99975 * 162.99830 * 12 11 10 14 14 C 1.50700 * 109.47083 * 297.99658 * 13 12 11 15 15 C 1.38301 * 119.92843 * 269.72209 * 14 13 12 16 16 C 1.38101 * 120.07062 * 179.72868 * 15 14 13 17 17 C 1.38887 * 119.92752 * 0.56867 * 16 15 14 18 18 O 1.35747 * 120.07059 * 179.68783 * 17 16 15 19 19 C 1.34825 * 116.99928 * 185.65859 * 18 17 16 20 20 H 1.07992 * 120.00496 * 355.69111 * 19 18 17 21 21 C 1.38662 * 119.99972 * 175.68855 * 19 18 17 22 22 N 1.31553 * 119.99851 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99791 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47499 * 89.99706 * 23 21 19 25 25 H 1.48499 * 109.46951 * 209.99732 * 23 21 19 26 26 H 1.48501 * 109.47080 * 329.99335 * 23 21 19 27 27 C 1.38879 * 119.85982 * 359.70409 * 17 16 15 28 28 C 1.38100 * 119.93455 * 0.02562 * 27 17 16 29 29 H 1.08995 * 109.47034 * 188.81111 * 1 2 3 30 30 H 1.08994 * 109.47301 * 308.81443 * 1 2 3 31 31 H 1.09003 * 109.46736 * 68.81886 * 1 2 3 32 32 H 1.09001 * 109.47087 * 59.99993 * 6 4 2 33 33 H 1.09005 * 109.47598 * 179.97438 * 6 4 2 34 34 H 1.08996 * 109.47714 * 299.99871 * 6 4 2 35 35 H 1.09002 * 109.60395 * 67.43823 * 10 7 4 36 36 H 1.08996 * 109.60394 * 187.92702 * 10 7 4 37 37 H 1.09000 * 109.39594 * 182.76964 * 11 10 7 38 38 H 1.08997 * 109.39877 * 302.50087 * 11 10 7 39 39 H 1.09002 * 109.47242 * 57.99500 * 13 12 11 40 40 H 1.09002 * 109.47551 * 177.99349 * 13 12 11 41 41 H 1.08001 * 119.96965 * 359.97438 * 15 14 13 42 42 H 1.08000 * 120.04003 * 180.27901 * 16 15 14 43 43 H 0.97004 * 119.99554 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.03294 * 179.97438 * 27 17 16 45 45 H 1.08000 * 119.96802 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0282 0.0000 4 6 2.0389 -0.7186 -1.2534 5 1 1.6409 -0.2293 -2.1424 6 6 1.5872 -2.1801 -1.2262 7 16 3.8551 -0.6376 -1.2741 8 8 4.3411 -1.5538 -2.2456 9 8 4.2497 0.7257 -1.3441 10 6 4.2505 -1.2785 0.3808 11 6 3.4491 -0.4858 1.4182 12 7 2.0148 -0.6864 1.1996 13 6 1.2412 -0.2879 2.3831 14 6 1.6353 -1.1500 3.5546 15 6 0.9579 -2.3302 3.8015 16 6 1.3202 -3.1254 4.8710 17 6 2.3584 -2.7328 5.7059 18 8 2.7128 -3.5090 6.7616 19 6 3.6473 -3.0147 7.5983 20 1 4.1282 -2.0738 7.3755 21 6 3.9910 -3.7145 8.7450 22 7 4.9033 -3.2324 9.5611 23 14 3.1597 -5.3424 9.1301 24 1 3.9362 -6.4513 8.5199 25 1 3.0996 -5.5315 10.6018 26 1 1.7824 -5.3384 8.5750 27 6 3.0329 -1.5443 5.4585 28 6 2.6695 -0.7563 4.3842 29 1 -0.3633 -1.0155 0.1574 30 1 -0.3633 0.6441 0.8007 31 1 -0.3633 0.3713 -0.9583 32 1 0.4983 -2.2234 -1.2008 33 1 1.9500 -2.6893 -2.1191 34 1 1.9910 -2.6688 -0.3396 35 1 3.9810 -2.3331 0.4386 36 1 5.3167 -1.1599 0.5738 37 1 3.7143 -0.8276 2.4187 38 1 3.6848 0.5742 1.3248 39 1 1.4458 0.7571 2.6160 40 1 0.1774 -0.4135 2.1811 41 1 0.1472 -2.6324 3.1551 42 1 0.7938 -4.0491 5.0607 43 1 5.1439 -3.7221 10.3631 44 1 3.8403 -1.2362 6.1061 45 1 3.1934 0.1682 4.1916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265502712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:55 Heat of formation + Delta-G solvation = -78.521897 kcal Electronic energy + Delta-G solvation = -27959.939738 eV Core-core repulsion = 24070.085108 eV Total energy + Delta-G solvation = -3889.854631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08845 -40.16271 -38.26024 -38.07129 -37.12293 -34.96313 -34.41039 -33.19610 -31.80355 -31.10437 -29.20527 -27.60419 -26.47606 -25.08995 -24.08434 -23.46325 -21.97622 -20.91384 -19.78663 -19.49819 -19.06306 -18.05104 -17.52705 -17.00714 -16.86911 -16.58739 -16.55552 -16.01116 -15.84818 -15.60108 -15.44411 -14.96790 -14.59647 -14.32890 -14.27321 -14.10983 -13.99698 -13.67546 -13.54729 -13.28057 -13.20347 -13.11748 -13.03096 -12.87491 -12.68104 -12.60657 -12.56193 -12.39490 -12.24239 -12.03983 -11.91266 -11.78524 -11.44715 -11.23504 -10.92705 -10.83933 -9.73784 -9.38301 -8.94716 -8.49839 -6.22092 -0.95718 0.60094 0.65472 1.31928 1.35910 1.51708 1.66640 2.27919 2.54372 2.66273 2.84706 3.01601 3.12587 3.24949 3.43811 3.61932 3.84594 3.90454 4.01984 4.09034 4.16275 4.22575 4.26369 4.42618 4.46130 4.51560 4.62067 4.70411 4.80342 4.87269 4.88003 4.89516 4.95710 5.02166 5.07657 5.11345 5.29846 5.37243 5.39737 5.48313 5.60964 5.76810 5.81802 5.92730 5.94487 6.06234 6.29213 6.84952 7.60748 8.61811 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.002715 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.232151 B =10310.164759 C =10754.733875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.091 3.909 3 H 0.064 0.936 4 C -0.529 4.529 5 H 0.162 0.838 6 C -0.136 4.136 7 S 2.403 3.597 8 O -0.979 6.979 9 O -0.980 6.980 10 C -0.587 4.587 11 C 0.051 3.949 12 N -0.541 5.541 13 C 0.111 3.889 14 C -0.145 4.145 15 C -0.043 4.043 16 C -0.194 4.194 17 C 0.120 3.880 18 O -0.247 6.247 19 C -0.397 4.397 20 H 0.080 0.920 21 C 0.009 3.991 22 N -0.925 5.925 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.269 1.269 26 H -0.261 1.261 27 C -0.239 4.239 28 C -0.069 4.069 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.118 0.882 41 H 0.158 0.842 42 H 0.125 0.875 43 H 0.284 0.716 44 H 0.102 0.898 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 5.783 -22.330 25.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 H 0.082 0.918 4 C -0.643 4.643 5 H 0.180 0.820 6 C -0.194 4.194 7 S 2.591 3.409 8 O -0.976 6.976 9 O -0.977 6.977 10 C -0.718 4.718 11 C -0.078 4.078 12 N -0.267 5.267 13 C -0.015 4.015 14 C -0.146 4.146 15 C -0.061 4.061 16 C -0.213 4.213 17 C 0.071 3.929 18 O -0.155 6.155 19 C -0.474 4.474 20 H 0.098 0.902 21 C -0.189 4.189 22 N -0.566 5.566 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.194 1.194 26 H -0.185 1.185 27 C -0.258 4.258 28 C -0.087 4.087 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.170 0.830 36 H 0.161 0.839 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.136 0.864 41 H 0.175 0.825 42 H 0.143 0.857 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.176 5.376 -22.870 26.016 hybrid contribution 0.565 0.149 1.542 1.649 sum -10.612 5.525 -21.328 24.454 Atomic orbital electron populations 1.22028 0.90749 1.04101 1.03605 1.21456 0.99235 0.94683 0.86435 0.91807 1.29914 1.20466 1.07144 1.06769 0.82032 1.21647 1.05047 0.89233 1.03460 1.08330 0.80288 0.74333 0.77903 1.93527 1.79786 1.65776 1.58532 1.93527 1.82199 1.35023 1.86961 1.30120 1.10054 1.13084 1.18589 1.21920 0.87399 0.98105 1.00404 1.61254 1.02318 1.59674 1.03433 1.21022 0.99574 0.95578 0.85286 1.19610 0.98634 0.97859 0.98497 1.20931 0.98603 0.92279 0.94313 1.20558 0.98917 1.03370 0.98440 1.19730 0.94284 0.90663 0.88247 1.83510 1.54702 1.43074 1.34211 1.20686 1.15918 1.07896 1.02857 0.90246 1.25282 0.96764 1.02787 0.94110 1.69733 1.32008 1.41104 1.13758 0.85212 0.79681 0.78112 0.77693 1.19181 1.19415 1.18505 1.21226 1.04413 0.97734 1.02461 1.20939 0.96394 0.98429 0.92948 0.90088 0.90889 0.90301 0.88454 0.91414 0.90293 0.82971 0.83938 0.88316 0.92274 0.93009 0.86372 0.82464 0.85675 0.90643 0.87970 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.44 71.98 0.54 -0.48 16 2 C 0.09 1.03 2.17 45.06 0.10 1.13 16 3 H 0.06 0.76 7.93 -2.39 -0.02 0.74 16 4 C -0.53 -6.04 2.88 30.65 0.09 -5.95 16 5 H 0.16 1.13 8.14 -2.39 -0.02 1.11 16 6 C -0.14 -1.43 8.52 71.98 0.61 -0.82 16 7 S 2.40 44.47 4.89 -56.49 -0.28 44.19 16 8 O -0.98 -24.71 17.71 -127.39 -2.26 -26.97 16 9 O -0.98 -24.57 18.10 -127.39 -2.31 -26.87 16 10 C -0.59 -9.80 6.19 72.04 0.45 -9.35 16 11 C 0.05 0.91 5.22 86.45 0.45 1.36 16 12 N -0.54 -7.98 3.51 -877.02 -3.08 -11.06 16 13 C 0.11 1.73 4.52 85.56 0.39 2.12 16 14 C -0.14 -3.49 4.82 -19.83 -0.10 -3.59 16 15 C -0.04 -1.09 9.69 22.25 0.22 -0.88 16 16 C -0.19 -6.72 9.99 22.39 0.22 -6.50 16 17 C 0.12 5.30 6.65 22.58 0.15 5.45 16 18 O -0.25 -13.10 8.59 -22.66 -0.19 -13.29 16 19 C -0.40 -23.07 9.95 67.92 0.68 -22.39 16 20 H 0.08 4.84 5.44 -2.91 -0.02 4.83 16 21 C 0.01 0.50 5.49 84.84 0.47 0.97 16 22 N -0.93 -54.99 13.96 21.62 0.30 -54.68 16 23 Si 0.97 44.91 28.62 68.60 1.96 46.87 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 27 C -0.24 -9.84 9.17 22.39 0.21 -9.63 16 28 C -0.07 -2.07 7.69 22.25 0.17 -1.90 16 29 H 0.08 0.51 6.92 -2.39 -0.02 0.50 16 30 H 0.07 0.44 6.77 -2.39 -0.02 0.43 16 31 H 0.08 0.36 8.12 -2.39 -0.02 0.35 16 32 H 0.10 0.70 6.72 -2.39 -0.02 0.68 16 33 H 0.07 0.75 7.97 -2.38 -0.02 0.73 16 34 H 0.08 0.93 6.48 -2.39 -0.02 0.92 16 35 H 0.15 2.28 7.38 -2.39 -0.02 2.26 16 36 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.10 2.12 4.94 -2.39 -0.01 2.11 16 38 H 0.06 1.00 7.93 -2.39 -0.02 0.98 16 39 H 0.05 0.76 8.08 -2.39 -0.02 0.74 16 40 H 0.12 1.29 5.75 -2.39 -0.01 1.28 16 41 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.10 4.77 5.64 -2.91 -0.02 4.75 16 45 H 0.13 3.30 7.82 -2.91 -0.02 3.28 16 Total: -1.00 -76.21 361.70 -0.21 -76.42 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.01 Total: 15.87 kcal Atomic # 6 Polarization: -55.10 SS G_CDS: 4.63 Total: -50.47 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -2.77 Total: -65.75 kcal Atomic # 8 Polarization: -62.38 SS G_CDS: -4.76 Total: -67.13 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.96 Total: 46.87 kcal Atomic # 16 Polarization: 44.47 SS G_CDS: -0.28 Total: 44.19 kcal Total: -76.21 -0.21 -76.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265502712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.103 kcal (2) G-P(sol) polarization free energy of solvation -76.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds