Wall clock time and date at job start Tue Mar 31 2020 23:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.60368 * 2 1 4 4 C 1.53182 * 109.60235 * 239.67567 * 2 1 3 5 5 H 1.09002 * 109.40392 * 182.58268 * 4 2 1 6 6 C 1.53007 * 109.32654 * 62.80475 * 4 2 1 7 7 N 1.46471 * 109.90283 * 302.71711 * 4 2 1 8 8 C 1.46901 * 110.99916 * 162.99694 * 7 4 2 9 9 C 1.50701 * 109.46904 * 170.00053 * 8 7 4 10 10 C 1.38304 * 119.92928 * 269.73210 * 9 8 7 11 11 C 1.38101 * 120.06661 * 179.72760 * 10 9 8 12 12 C 1.38880 * 119.93219 * 0.51999 * 11 10 9 13 13 O 1.35751 * 120.06991 * 179.72845 * 12 11 10 14 14 C 1.34830 * 116.99835 * 174.48953 * 13 12 11 15 15 H 1.08005 * 120.00046 * 5.05655 * 14 13 12 16 16 C 1.38655 * 120.00076 * 185.05845 * 14 13 12 17 17 N 1.31560 * 119.99672 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47131 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47055 * 120.00036 * 18 16 14 21 21 H 1.48505 * 109.47241 * 240.00000 * 18 16 14 22 22 C 1.38882 * 119.85734 * 359.75302 * 12 11 10 23 23 C 1.38098 * 119.93413 * 359.97438 * 22 12 11 24 24 C 1.46466 * 112.46260 * 288.03503 * 7 4 2 25 25 C 1.53178 * 109.89997 * 71.96254 * 24 7 4 26 26 S 1.81819 * 108.68096 * 297.36350 * 25 24 7 27 27 O 1.42104 * 108.70055 * 298.06228 * 26 25 24 28 28 O 1.42097 * 108.82827 * 166.61502 * 26 25 24 29 29 H 1.09007 * 109.46639 * 180.32105 * 1 2 3 30 30 H 1.08991 * 109.46837 * 300.31920 * 1 2 3 31 31 H 1.09003 * 109.47017 * 60.32568 * 1 2 3 32 32 H 1.09000 * 109.46936 * 299.60179 * 6 4 2 33 33 H 1.08998 * 109.47076 * 59.60914 * 6 4 2 34 34 H 1.08998 * 109.46911 * 179.60351 * 6 4 2 35 35 H 1.09002 * 109.47249 * 50.00351 * 8 7 4 36 36 H 1.08992 * 109.47404 * 290.00192 * 8 7 4 37 37 H 1.08001 * 119.96710 * 359.97288 * 10 9 8 38 38 H 1.08005 * 120.03357 * 180.26925 * 11 10 9 39 39 H 0.97004 * 119.99525 * 179.97438 * 17 16 14 40 40 H 1.08002 * 120.02822 * 180.02562 * 22 12 11 41 41 H 1.07997 * 119.96570 * 180.02562 * 23 22 12 42 42 H 1.09002 * 109.40359 * 192.09519 * 24 7 4 43 43 H 1.09000 * 109.40274 * 311.83131 * 24 7 4 44 44 H 1.09003 * 109.60617 * 177.60836 * 25 24 7 45 45 H 1.08999 * 109.60466 * 57.12092 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0267 0.0000 4 6 2.0439 -0.7286 -1.2456 5 1 3.1330 -0.7668 -1.2193 6 6 1.5922 0.0273 -2.4969 7 7 1.5100 -2.0920 -1.2816 8 6 1.6413 -2.6735 -2.6242 9 6 1.3140 -4.1435 -2.5691 10 6 2.3169 -5.0652 -2.3293 11 6 2.0193 -6.4126 -2.2726 12 6 0.7132 -6.8425 -2.4674 13 8 0.4184 -8.1667 -2.4178 14 6 -0.8834 -8.5076 -2.5012 15 1 -1.6297 -7.7486 -2.6843 16 6 -1.2641 -9.8324 -2.3519 17 7 -0.3551 -10.7568 -2.1284 18 14 -3.0678 -10.3045 -2.4668 19 1 -3.8823 -9.0893 -2.7217 20 1 -3.2570 -11.2691 -3.5800 21 1 -3.4979 -10.9307 -1.1908 22 6 -0.2906 -5.9149 -2.7137 23 6 0.0124 -4.5685 -2.7635 24 6 2.1212 -2.9592 -0.2719 25 6 1.6191 -2.5707 1.1221 26 16 2.1440 -0.8662 1.4760 27 8 3.5642 -0.8174 1.4751 28 8 1.4318 -0.3933 2.6110 29 1 -0.3633 -1.0277 0.0058 30 1 -0.3633 0.5187 0.8870 31 1 -0.3633 0.5088 -0.8929 32 1 0.5032 0.0635 -2.5261 33 1 1.9890 1.0422 -2.4713 34 1 1.9626 -0.4853 -3.3846 35 1 2.6636 -2.5419 -2.9788 36 1 0.9532 -2.1734 -3.3056 37 1 3.3332 -4.7306 -2.1823 38 1 2.8022 -7.1315 -2.0810 39 1 -0.6215 -11.6837 -2.0235 40 1 -1.3074 -6.2462 -2.8652 41 1 -0.7679 -3.8467 -2.9546 42 1 1.8553 -3.9964 -0.4764 43 1 3.2052 -2.8506 -0.3095 44 1 2.0438 -3.2457 1.8652 45 1 0.5312 -2.6312 1.1490 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265502715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:00 Heat of formation + Delta-G solvation = -80.368381 kcal Electronic energy + Delta-G solvation = -27988.113789 eV Core-core repulsion = 24098.179089 eV Total energy + Delta-G solvation = -3889.934700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.10149 -40.09292 -38.20340 -38.04636 -37.11867 -34.96258 -34.24127 -33.12228 -31.76637 -31.03306 -29.11082 -27.59813 -26.56087 -25.10141 -24.16006 -23.42133 -22.03260 -20.85255 -19.85519 -19.46352 -18.81925 -18.05211 -17.52043 -17.01662 -16.78695 -16.57414 -16.35516 -16.22293 -15.84942 -15.50365 -15.40139 -15.02972 -14.47328 -14.34540 -14.30710 -14.12612 -13.65205 -13.63818 -13.44935 -13.26981 -13.18820 -13.07773 -13.00157 -12.81133 -12.73466 -12.59853 -12.56397 -12.28789 -12.21817 -12.10598 -11.96642 -11.79426 -11.43664 -11.14874 -10.89837 -10.75573 -9.73043 -9.36428 -8.85418 -8.47052 -6.14789 -0.95351 0.60871 0.68203 1.35760 1.43383 1.53633 1.66974 2.17676 2.56925 2.66510 2.89467 3.04237 3.23894 3.44864 3.53627 3.63092 3.84982 3.88107 4.04573 4.11914 4.15011 4.22880 4.28890 4.43497 4.46365 4.54570 4.61652 4.72741 4.83611 4.86320 4.87665 4.93263 4.94050 5.03767 5.11180 5.13454 5.18093 5.32710 5.35902 5.49016 5.58717 5.73954 5.80171 5.94606 6.04346 6.06210 6.25316 6.98367 7.79890 8.76379 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018039 B = 0.002718 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.783907 B =10298.432246 C =10577.619364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.530 4.530 3 H 0.162 0.838 4 C 0.091 3.909 5 H 0.064 0.936 6 C -0.147 4.147 7 N -0.541 5.541 8 C 0.119 3.881 9 C -0.160 4.160 10 C -0.061 4.061 11 C -0.206 4.206 12 C 0.115 3.885 13 O -0.235 6.235 14 C -0.410 4.410 15 H 0.103 0.897 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.017 2.983 19 H -0.250 1.250 20 H -0.269 1.269 21 H -0.270 1.270 22 C -0.244 4.244 23 C -0.044 4.044 24 C 0.049 3.951 25 C -0.587 4.587 26 S 2.403 3.597 27 O -0.980 6.980 28 O -0.979 6.979 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.108 0.892 39 H 0.272 0.728 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.141 0.859 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 24.285 -0.242 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.643 4.643 3 H 0.180 0.820 4 C -0.018 4.018 5 H 0.082 0.918 6 C -0.205 4.205 7 N -0.267 5.267 8 C -0.007 4.007 9 C -0.161 4.161 10 C -0.079 4.079 11 C -0.226 4.226 12 C 0.065 3.935 13 O -0.141 6.141 14 C -0.486 4.486 15 H 0.120 0.880 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.173 1.173 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.263 4.263 23 C -0.062 4.062 24 C -0.080 4.080 25 C -0.719 4.719 26 S 2.592 3.408 27 O -0.977 6.977 28 O -0.976 6.976 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.161 0.839 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.161 0.839 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.159 0.841 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.825 24.269 0.713 24.348 hybrid contribution -0.078 -1.459 -0.433 1.524 sum 1.747 22.810 0.280 22.878 Atomic orbital electron populations 1.21663 0.88319 1.04806 1.04638 1.29903 1.08535 1.12543 1.13347 0.82038 1.21476 0.97429 0.87834 0.95094 0.91796 1.22022 1.03441 1.00276 0.94761 1.61351 1.58764 1.01222 1.05344 1.20957 1.01568 0.88896 0.89268 1.19575 0.93004 0.95519 1.08013 1.20909 0.99719 0.90551 0.96719 1.20414 0.93658 0.97196 1.11283 1.19967 0.95130 0.84329 0.94074 1.83942 1.28675 1.19884 1.81638 1.21854 0.81169 0.94611 1.51005 0.87972 1.26569 1.05340 0.94279 0.95909 1.70194 1.36066 1.01986 1.47748 0.84547 0.74170 0.79149 0.78481 1.17287 1.19455 1.19526 1.21269 0.99215 0.94482 1.11378 1.20923 0.96720 0.93398 0.95174 1.21983 0.97237 1.00758 0.88003 1.30126 1.13927 1.22106 1.05696 1.08327 0.74806 0.79735 0.77949 1.93527 1.29716 1.86691 1.87751 1.93525 1.75206 1.79835 1.49023 0.90298 0.91330 0.88482 0.90272 0.90406 0.90917 0.92344 0.87398 0.83949 0.87370 0.91921 0.86654 0.83904 0.88045 0.92377 0.84067 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.51 71.98 0.61 -0.91 16 2 C -0.53 -6.46 2.89 30.66 0.09 -6.37 16 3 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.09 1.11 2.12 45.06 0.10 1.21 16 5 H 0.06 0.82 7.93 -2.39 -0.02 0.80 16 6 C -0.15 -1.19 8.05 71.98 0.58 -0.61 16 7 N -0.54 -8.54 3.64 -877.01 -3.19 -11.73 16 8 C 0.12 1.97 4.15 85.56 0.35 2.32 16 9 C -0.16 -4.07 4.10 -19.83 -0.08 -4.15 16 10 C -0.06 -1.76 7.61 22.25 0.17 -1.59 16 11 C -0.21 -8.17 9.99 22.39 0.22 -7.94 16 12 C 0.12 5.45 6.65 22.58 0.15 5.60 16 13 O -0.23 -13.80 9.76 -22.74 -0.22 -14.02 16 14 C -0.41 -23.36 9.49 67.92 0.64 -22.72 16 15 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 16 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 17 N -0.92 -56.05 13.67 21.61 0.30 -55.75 16 18 Si 1.02 42.14 29.55 68.60 2.03 44.17 16 19 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 C -0.24 -9.82 9.17 22.39 0.21 -9.61 16 23 C -0.04 -1.29 9.69 22.25 0.22 -1.08 16 24 C 0.05 0.94 4.82 86.45 0.42 1.36 16 25 C -0.59 -10.46 6.19 72.04 0.45 -10.01 16 26 S 2.40 46.33 4.89 -56.49 -0.28 46.06 16 27 O -0.98 -25.28 18.10 -127.39 -2.31 -27.58 16 28 O -0.98 -25.29 17.72 -127.39 -2.26 -27.55 16 29 H 0.08 0.98 6.48 -2.38 -0.02 0.96 16 30 H 0.07 0.79 7.97 -2.39 -0.02 0.77 16 31 H 0.10 0.77 6.51 -2.39 -0.02 0.75 16 32 H 0.08 0.59 6.52 -2.39 -0.02 0.57 16 33 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 0.54 6.47 -2.39 -0.02 0.53 16 35 H 0.06 0.84 7.90 -2.39 -0.02 0.82 16 36 H 0.11 1.42 6.85 -2.39 -0.02 1.40 16 37 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 39 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.12 4.82 5.64 -2.91 -0.02 4.80 16 41 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 42 H 0.10 2.40 4.83 -2.39 -0.01 2.39 16 43 H 0.06 1.06 7.93 -2.39 -0.02 1.04 16 44 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.15 2.41 7.38 -2.39 -0.02 2.39 16 Total: -1.00 -78.67 362.11 -0.34 -79.01 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 1.01 Total: 22.76 kcal Atomic # 6 Polarization: -59.94 SS G_CDS: 4.59 Total: -55.36 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -2.90 Total: -67.49 kcal Atomic # 8 Polarization: -64.36 SS G_CDS: -4.78 Total: -69.14 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 46.33 SS G_CDS: -0.28 Total: 46.06 kcal Total: -78.67 -0.34 -79.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265502715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.363 kcal (2) G-P(sol) polarization free energy of solvation -78.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds