Wall clock time and date at job start Tue Mar 31 2020 23:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.32632 * 2 1 4 4 C 1.53184 * 109.39946 * 119.77799 * 2 1 3 5 5 H 1.08993 * 109.60172 * 63.01204 * 4 2 1 6 6 C 1.52998 * 109.60144 * 302.68696 * 4 2 1 7 7 S 1.81810 * 108.67754 * 182.77015 * 4 2 1 8 8 O 1.42098 * 108.70625 * 61.94069 * 7 4 2 9 9 O 1.42104 * 108.70265 * 193.43014 * 7 4 2 10 10 C 1.81817 * 101.02154 * 307.68293 * 7 4 2 11 11 C 1.53188 * 108.67552 * 52.31439 * 10 7 4 12 12 N 1.46458 * 109.90232 * 297.36726 * 11 10 7 13 13 C 1.46899 * 111.00114 * 196.99723 * 12 11 10 14 14 C 1.50706 * 109.46983 * 44.14605 * 13 12 11 15 15 C 1.38303 * 119.93034 * 90.00068 * 14 13 12 16 16 C 1.38099 * 120.06408 * 180.02562 * 15 14 13 17 17 C 1.38873 * 119.93656 * 359.97438 * 16 15 14 18 18 O 1.35754 * 120.07268 * 180.02562 * 17 16 15 19 19 C 1.34829 * 116.99935 * 354.46689 * 18 17 16 20 20 H 1.07998 * 119.99409 * 5.05327 * 19 18 17 21 21 C 1.38651 * 120.00088 * 185.05715 * 19 18 17 22 22 N 1.31552 * 120.00423 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00037 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46940 * 89.99867 * 23 21 19 25 25 H 1.48497 * 109.47214 * 210.00348 * 23 21 19 26 26 H 1.48504 * 109.47273 * 330.00405 * 23 21 19 27 27 C 1.38882 * 119.85929 * 0.28297 * 17 16 15 28 28 C 1.38104 * 119.92850 * 359.46392 * 27 17 16 29 29 H 1.08998 * 109.46999 * 179.78515 * 1 2 3 30 30 H 1.08996 * 109.46820 * 299.78558 * 1 2 3 31 31 H 1.08995 * 109.46846 * 59.78095 * 1 2 3 32 32 H 1.09005 * 109.47360 * 60.00333 * 6 4 2 33 33 H 1.09000 * 109.47073 * 179.97438 * 6 4 2 34 34 H 1.08999 * 109.47492 * 300.00050 * 6 4 2 35 35 H 1.08998 * 109.60303 * 172.07586 * 10 7 4 36 36 H 1.09002 * 109.60277 * 292.39904 * 10 7 4 37 37 H 1.08998 * 109.39510 * 177.22898 * 11 10 7 38 38 H 1.09005 * 109.39579 * 57.50331 * 11 10 7 39 39 H 1.08999 * 109.47612 * 284.14682 * 13 12 11 40 40 H 1.09000 * 109.47408 * 164.14129 * 13 12 11 41 41 H 1.07996 * 119.96532 * 0.02562 * 15 14 13 42 42 H 1.08006 * 120.03112 * 180.02562 * 16 15 14 43 43 H 0.97002 * 120.00417 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.03715 * 179.72094 * 27 17 16 45 45 H 1.08002 * 119.95891 * 180.23707 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8908 1.0286 0.0000 4 6 2.0389 -0.7176 1.2541 5 1 1.7208 -1.7599 1.2334 6 6 1.4752 -0.0335 2.5011 7 16 3.8549 -0.6343 1.2761 8 8 4.2478 0.7297 1.3429 9 8 4.3413 -1.5496 2.2482 10 6 4.2524 -1.2752 -0.3783 11 6 3.4508 -0.4839 -1.4165 12 7 2.0166 -0.6862 -1.1990 13 6 1.2434 -0.2889 -2.3832 14 6 1.9179 -0.8159 -3.6236 15 6 1.5853 -2.0666 -4.1114 16 6 2.2020 -2.5525 -5.2475 17 6 3.1565 -1.7837 -5.9006 18 8 3.7641 -2.2584 -7.0179 19 6 3.4813 -3.5270 -7.3765 20 1 2.7374 -4.0890 -6.8314 21 6 4.1454 -4.1099 -8.4449 22 7 3.8691 -5.3475 -8.7951 23 14 5.4316 -3.1374 -9.3880 24 1 6.7641 -3.3465 -8.7668 25 1 5.4652 -3.5993 -10.7989 26 1 5.0880 -1.6932 -9.3480 27 6 3.4921 -0.5304 -5.4051 28 6 2.8681 -0.0479 -4.2715 29 1 -0.3633 -1.0276 -0.0039 30 1 -0.3633 0.5105 0.8919 31 1 -0.3633 0.5172 -0.8880 32 1 0.3862 -0.0745 2.4772 33 1 1.8381 -0.5460 3.3921 34 1 1.7992 1.0070 2.5227 35 1 5.3186 -1.1554 -0.5704 36 1 3.9870 -2.3309 -0.4349 37 1 3.7172 -0.8256 -2.4167 38 1 3.6852 0.5766 -1.3233 39 1 1.1888 0.7986 -2.4335 40 1 0.2364 -0.7005 -2.3145 41 1 0.8427 -2.6638 -3.6033 42 1 1.9417 -3.5291 -5.6282 43 1 4.3335 -5.7552 -9.5428 44 1 4.2373 0.0680 -5.9082 45 1 3.1259 0.9283 -3.8880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265502717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:05 Heat of formation + Delta-G solvation = -55.711117 kcal Electronic energy + Delta-G solvation = -27826.232533 eV Core-core repulsion = 23937.367052 eV Total energy + Delta-G solvation = -3888.865481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.96374 -38.90166 -37.18542 -36.78662 -36.22661 -34.51897 -32.56363 -32.09035 -30.39504 -30.19418 -28.40100 -26.24959 -25.29520 -24.33793 -22.70005 -21.99841 -20.92997 -20.12893 -19.03197 -17.99701 -17.40077 -17.10828 -16.78416 -16.42558 -15.94577 -15.58242 -15.06353 -14.60641 -14.54652 -14.14276 -13.96634 -13.83992 -13.74049 -13.60867 -13.15559 -12.86019 -12.80945 -12.56672 -12.48884 -12.33129 -12.29037 -12.23449 -12.21250 -12.08152 -11.88739 -11.78253 -11.42152 -11.27215 -10.85081 -10.82183 -10.78854 -10.63605 -10.23778 -10.13484 -9.48757 -8.95808 -8.60855 -8.37773 -7.43590 -6.50451 -4.17435 -0.18586 1.95897 2.02278 2.45016 3.15717 3.19860 3.33439 3.36415 3.42652 3.82713 4.11568 4.15904 4.32271 4.40723 4.48771 4.60177 4.73503 4.78028 4.87349 4.95102 4.99328 5.01583 5.15559 5.18371 5.20992 5.37003 5.40020 5.50497 5.55092 5.57004 5.61943 5.69583 5.73513 5.83031 5.89472 6.01766 6.21167 6.43061 6.64211 6.69307 6.76050 6.94784 7.10915 7.19711 7.48623 7.69904 7.93672 8.84300 9.45167 10.56833 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.002683 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.058957 B =10433.259344 C =10956.902833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.096 3.904 3 H 0.062 0.938 4 C -0.553 4.553 5 H 0.146 0.854 6 C -0.142 4.142 7 S 2.405 3.595 8 O -0.941 6.941 9 O -0.945 6.945 10 C -0.590 4.590 11 C 0.053 3.947 12 N -0.547 5.547 13 C 0.117 3.883 14 C -0.187 4.187 15 C -0.048 4.048 16 C -0.223 4.223 17 C 0.163 3.837 18 O -0.214 6.214 19 C -0.391 4.391 20 H 0.107 0.893 21 C 0.065 3.935 22 N -0.876 5.876 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.193 4.193 28 C -0.073 4.073 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.281 0.719 44 H 0.117 0.883 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 10.848 18.322 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 H 0.080 0.920 4 C -0.664 4.664 5 H 0.164 0.836 6 C -0.200 4.200 7 S 2.589 3.411 8 O -0.938 6.938 9 O -0.942 6.942 10 C -0.721 4.721 11 C -0.076 4.076 12 N -0.272 5.272 13 C -0.008 4.008 14 C -0.189 4.189 15 C -0.067 4.067 16 C -0.242 4.242 17 C 0.110 3.890 18 O -0.119 6.119 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.139 4.139 22 N -0.513 5.513 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.212 4.212 28 C -0.092 4.092 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.140 0.860 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.130 0.870 42 H 0.151 0.849 43 H 0.091 0.909 44 H 0.135 0.865 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.257 10.561 18.759 22.161 hybrid contribution 0.197 0.435 -1.231 1.320 sum -5.060 10.997 17.529 21.302 Atomic orbital electron populations 1.21998 0.92713 1.03327 1.02545 1.21346 0.97778 0.95026 0.87177 0.92002 1.30064 1.24226 1.09852 1.02240 0.83564 1.21665 1.03647 1.00859 0.93830 1.08501 0.78688 0.75814 0.78129 1.93568 1.80570 1.33232 1.86426 1.93581 1.78120 1.65347 1.57189 1.30177 1.09574 1.12694 1.19627 1.22012 0.86435 0.97643 1.01496 1.61385 1.03220 1.59313 1.03289 1.20868 0.96665 0.97527 0.85741 1.19153 1.03580 0.97075 0.99049 1.20635 0.97576 0.94037 0.94471 1.21296 1.01448 1.02546 0.98933 1.19155 0.91198 0.92594 0.86022 1.83573 1.61415 1.30740 1.36149 1.20775 1.23923 0.85595 1.16358 0.87528 1.24479 0.97749 0.95293 0.96408 1.69638 1.41694 1.12008 1.28006 0.86182 0.81091 0.81073 0.78559 1.19819 1.20704 1.18349 1.20188 1.05464 0.96037 0.99535 1.20543 0.95621 0.98282 0.94720 0.91151 0.91478 0.91500 0.89644 0.91009 0.90860 0.84542 0.83911 0.86012 0.92872 0.94084 0.89652 0.87001 0.84891 0.90918 0.86466 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.95 37.16 0.30 -0.70 16 2 C 0.10 0.80 2.00 -67.85 -0.14 0.66 16 3 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 4 C -0.55 -4.36 2.78 -26.64 -0.07 -4.43 16 5 H 0.15 0.99 8.14 -51.93 -0.42 0.56 16 6 C -0.14 -0.94 8.78 37.16 0.33 -0.61 16 7 S 2.40 24.72 4.74 -107.50 -0.51 24.21 16 8 O -0.94 -12.16 18.06 -57.80 -1.04 -13.21 16 9 O -0.95 -12.64 18.11 -57.80 -1.05 -13.69 16 10 C -0.59 -5.67 6.58 37.25 0.24 -5.42 16 11 C 0.05 0.57 4.81 -3.97 -0.02 0.55 16 12 N -0.55 -5.50 4.48 -228.55 -1.02 -6.53 16 13 C 0.12 1.26 4.14 -4.97 -0.02 1.24 16 14 C -0.19 -2.64 4.12 -104.57 -0.43 -3.07 16 15 C -0.05 -0.78 9.69 -39.61 -0.38 -1.16 16 16 C -0.22 -4.44 9.17 -39.40 -0.36 -4.80 16 17 C 0.16 3.51 6.65 -39.11 -0.26 3.25 16 18 O -0.21 -5.40 8.59 0.04 0.00 -5.40 16 19 C -0.39 -10.62 9.95 30.88 0.31 -10.31 16 20 H 0.11 2.95 5.44 -52.49 -0.29 2.67 16 21 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 22 N -0.88 -24.67 13.96 55.48 0.77 -23.90 16 23 Si 0.91 21.05 28.62 -169.99 -4.86 16.18 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.19 -3.48 9.99 -39.39 -0.39 -3.87 16 28 C -0.07 -1.07 7.59 -39.61 -0.30 -1.38 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.36 6.36 -51.93 -0.33 0.03 16 31 H 0.07 0.44 6.47 -51.93 -0.34 0.10 16 32 H 0.08 0.42 6.38 -51.93 -0.33 0.09 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.12 1.53 4.81 -51.93 -0.25 1.28 16 38 H 0.05 0.54 7.93 -51.93 -0.41 0.12 16 39 H 0.04 0.40 7.90 -51.93 -0.41 -0.01 16 40 H 0.09 0.83 6.85 -51.93 -0.36 0.48 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 43 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 45 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -32.45 364.61 -9.88 -42.33 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.36 Total: 2.89 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: -1.30 Total: -28.39 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: -0.25 Total: -30.43 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -2.09 Total: -32.30 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.18 kcal Atomic # 16 Polarization: 24.72 SS G_CDS: -0.51 Total: 24.21 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.45 -9.88 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265502717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.378 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds