Wall clock time and date at job start Tue Mar 31 2020 23:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.32632 * 2 1 4 4 C 1.53184 * 109.39946 * 119.77799 * 2 1 3 5 5 H 1.08993 * 109.60172 * 63.01204 * 4 2 1 6 6 C 1.52998 * 109.60144 * 302.68696 * 4 2 1 7 7 S 1.81810 * 108.67754 * 182.77015 * 4 2 1 8 8 O 1.42098 * 108.70625 * 61.94069 * 7 4 2 9 9 O 1.42104 * 108.70265 * 193.43014 * 7 4 2 10 10 C 1.81817 * 101.02154 * 307.68293 * 7 4 2 11 11 C 1.53188 * 108.67552 * 52.31439 * 10 7 4 12 12 N 1.46458 * 109.90232 * 297.36726 * 11 10 7 13 13 C 1.46899 * 111.00114 * 196.99723 * 12 11 10 14 14 C 1.50706 * 109.46983 * 44.14605 * 13 12 11 15 15 C 1.38303 * 119.93034 * 90.00068 * 14 13 12 16 16 C 1.38099 * 120.06408 * 180.02562 * 15 14 13 17 17 C 1.38873 * 119.93656 * 359.97438 * 16 15 14 18 18 O 1.35754 * 120.07268 * 180.02562 * 17 16 15 19 19 C 1.34829 * 116.99935 * 354.46689 * 18 17 16 20 20 H 1.07998 * 119.99409 * 5.05327 * 19 18 17 21 21 C 1.38651 * 120.00088 * 185.05715 * 19 18 17 22 22 N 1.31552 * 120.00423 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00037 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46940 * 89.99867 * 23 21 19 25 25 H 1.48497 * 109.47214 * 210.00348 * 23 21 19 26 26 H 1.48504 * 109.47273 * 330.00405 * 23 21 19 27 27 C 1.38882 * 119.85929 * 0.28297 * 17 16 15 28 28 C 1.38104 * 119.92850 * 359.46392 * 27 17 16 29 29 H 1.08998 * 109.46999 * 179.78515 * 1 2 3 30 30 H 1.08996 * 109.46820 * 299.78558 * 1 2 3 31 31 H 1.08995 * 109.46846 * 59.78095 * 1 2 3 32 32 H 1.09005 * 109.47360 * 60.00333 * 6 4 2 33 33 H 1.09000 * 109.47073 * 179.97438 * 6 4 2 34 34 H 1.08999 * 109.47492 * 300.00050 * 6 4 2 35 35 H 1.08998 * 109.60303 * 172.07586 * 10 7 4 36 36 H 1.09002 * 109.60277 * 292.39904 * 10 7 4 37 37 H 1.08998 * 109.39510 * 177.22898 * 11 10 7 38 38 H 1.09005 * 109.39579 * 57.50331 * 11 10 7 39 39 H 1.08999 * 109.47612 * 284.14682 * 13 12 11 40 40 H 1.09000 * 109.47408 * 164.14129 * 13 12 11 41 41 H 1.07996 * 119.96532 * 0.02562 * 15 14 13 42 42 H 1.08006 * 120.03112 * 180.02562 * 16 15 14 43 43 H 0.97002 * 120.00417 * 179.97438 * 22 21 19 44 44 H 1.08005 * 120.03715 * 179.72094 * 27 17 16 45 45 H 1.08002 * 119.95891 * 180.23707 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8908 1.0286 0.0000 4 6 2.0389 -0.7176 1.2541 5 1 1.7208 -1.7599 1.2334 6 6 1.4752 -0.0335 2.5011 7 16 3.8549 -0.6343 1.2761 8 8 4.2478 0.7297 1.3429 9 8 4.3413 -1.5496 2.2482 10 6 4.2524 -1.2752 -0.3783 11 6 3.4508 -0.4839 -1.4165 12 7 2.0166 -0.6862 -1.1990 13 6 1.2434 -0.2889 -2.3832 14 6 1.9179 -0.8159 -3.6236 15 6 1.5853 -2.0666 -4.1114 16 6 2.2020 -2.5525 -5.2475 17 6 3.1565 -1.7837 -5.9006 18 8 3.7641 -2.2584 -7.0179 19 6 3.4813 -3.5270 -7.3765 20 1 2.7374 -4.0890 -6.8314 21 6 4.1454 -4.1099 -8.4449 22 7 3.8691 -5.3475 -8.7951 23 14 5.4316 -3.1374 -9.3880 24 1 6.7641 -3.3465 -8.7668 25 1 5.4652 -3.5993 -10.7989 26 1 5.0880 -1.6932 -9.3480 27 6 3.4921 -0.5304 -5.4051 28 6 2.8681 -0.0479 -4.2715 29 1 -0.3633 -1.0276 -0.0039 30 1 -0.3633 0.5105 0.8919 31 1 -0.3633 0.5172 -0.8880 32 1 0.3862 -0.0745 2.4772 33 1 1.8381 -0.5460 3.3921 34 1 1.7992 1.0070 2.5227 35 1 5.3186 -1.1554 -0.5704 36 1 3.9870 -2.3309 -0.4349 37 1 3.7172 -0.8256 -2.4167 38 1 3.6852 0.5766 -1.3233 39 1 1.1888 0.7986 -2.4335 40 1 0.2364 -0.7005 -2.3145 41 1 0.8427 -2.6638 -3.6033 42 1 1.9417 -3.5291 -5.6282 43 1 4.3335 -5.7552 -9.5428 44 1 4.2373 0.0680 -5.9082 45 1 3.1259 0.9283 -3.8880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265502717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:04 Heat of formation + Delta-G solvation = -79.409413 kcal Electronic energy + Delta-G solvation = -27827.260168 eV Core-core repulsion = 23937.367052 eV Total energy + Delta-G solvation = -3889.893116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.16796 -40.13153 -38.31669 -37.95557 -37.13343 -35.32053 -34.45548 -33.05790 -31.80790 -31.21084 -29.20655 -27.64241 -26.42804 -25.35701 -23.88260 -23.17397 -21.98307 -21.09422 -19.89369 -19.75928 -19.08258 -17.90611 -17.61573 -17.21913 -16.85043 -16.67704 -16.43542 -16.00504 -15.68370 -15.59641 -15.31798 -15.04943 -14.60961 -14.46002 -14.26010 -14.23636 -14.07490 -13.78154 -13.39480 -13.30415 -13.17325 -13.12296 -13.09390 -12.97545 -12.92537 -12.67428 -12.50712 -12.42050 -12.19229 -12.10555 -11.97347 -11.80833 -11.47321 -11.26791 -10.94944 -10.84100 -9.77261 -9.41401 -8.94636 -8.50672 -6.23039 -0.97461 0.55789 0.61068 1.31151 1.34526 1.50940 1.69071 2.26930 2.51632 2.62744 2.82966 3.02223 3.10144 3.20610 3.41950 3.64609 3.78614 3.87767 4.01056 4.07431 4.10453 4.17711 4.26340 4.41773 4.42241 4.51386 4.58021 4.65549 4.70782 4.82072 4.84056 4.86921 4.92279 4.97303 5.02174 5.07670 5.20509 5.26402 5.36861 5.43723 5.56299 5.74387 5.80906 5.89250 5.93912 6.04341 6.24740 6.84058 7.58884 8.60905 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.002683 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.058957 B =10433.259344 C =10956.902833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.093 3.907 3 H 0.067 0.933 4 C -0.534 4.534 5 H 0.162 0.838 6 C -0.149 4.149 7 S 2.405 3.595 8 O -0.971 6.971 9 O -0.983 6.983 10 C -0.590 4.590 11 C 0.048 3.952 12 N -0.550 5.550 13 C 0.117 3.883 14 C -0.154 4.154 15 C -0.049 4.049 16 C -0.239 4.239 17 C 0.122 3.878 18 O -0.246 6.246 19 C -0.397 4.397 20 H 0.082 0.918 21 C 0.010 3.990 22 N -0.924 5.924 23 Si 0.969 3.031 24 H -0.267 1.267 25 H -0.269 1.269 26 H -0.262 1.262 27 C -0.193 4.193 28 C -0.063 4.063 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.105 0.895 43 H 0.284 0.716 44 H 0.126 0.874 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 13.585 20.577 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 H 0.085 0.915 4 C -0.647 4.647 5 H 0.180 0.820 6 C -0.207 4.207 7 S 2.594 3.406 8 O -0.968 6.968 9 O -0.980 6.980 10 C -0.721 4.721 11 C -0.081 4.081 12 N -0.276 5.276 13 C -0.009 4.009 14 C -0.155 4.155 15 C -0.068 4.068 16 C -0.258 4.258 17 C 0.072 3.928 18 O -0.154 6.154 19 C -0.474 4.474 20 H 0.099 0.901 21 C -0.188 4.188 22 N -0.565 5.565 23 Si 0.792 3.208 24 H -0.192 1.192 25 H -0.193 1.193 26 H -0.186 1.186 27 C -0.212 4.212 28 C -0.081 4.081 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.154 0.846 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.144 0.856 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.672 13.333 21.070 25.812 hybrid contribution 0.434 -0.227 -1.564 1.639 sum -6.238 13.106 19.506 24.314 Atomic orbital electron populations 1.22049 0.90902 1.03874 1.03828 1.21484 0.99114 0.94953 0.86028 0.91526 1.29924 1.20518 1.11201 1.03074 0.82007 1.21810 1.05134 1.00729 0.93051 1.08292 0.80056 0.74572 0.77696 1.93522 1.82004 1.34486 1.86837 1.93531 1.79844 1.65972 1.58700 1.30159 1.10233 1.12914 1.18766 1.22017 0.87147 0.98345 1.00568 1.61349 1.02646 1.59942 1.03621 1.20978 0.97023 0.98906 0.83986 1.19634 1.01241 0.95363 0.99226 1.20902 0.97581 0.95199 0.93111 1.21292 1.02240 1.01694 1.00574 1.19714 0.92394 0.94327 0.86316 1.83517 1.63542 1.29635 1.38682 1.20695 1.23527 0.86719 1.16418 0.90069 1.25265 0.99884 0.96265 0.97427 1.69725 1.43755 1.13572 1.29400 0.85233 0.78570 0.79277 0.77731 1.19187 1.19345 1.18637 1.20488 1.05713 0.94630 1.00366 1.20989 0.94420 0.99698 0.92994 0.90952 0.89764 0.90852 0.87214 0.90859 0.90833 0.83806 0.83335 0.87882 0.91845 0.91775 0.87732 0.84567 0.87709 0.90602 0.85624 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 7.95 71.98 0.57 -0.62 16 2 C 0.09 1.12 2.00 45.06 0.09 1.21 16 3 H 0.07 0.80 7.93 -2.38 -0.02 0.78 16 4 C -0.53 -6.53 2.78 30.65 0.09 -6.45 16 5 H 0.16 1.55 8.14 -2.39 -0.02 1.53 16 6 C -0.15 -1.43 8.78 71.98 0.63 -0.80 16 7 S 2.41 45.39 4.74 -56.49 -0.27 45.12 16 8 O -0.97 -23.68 18.06 -127.41 -2.30 -25.98 16 9 O -0.98 -25.63 18.11 -127.41 -2.31 -27.93 16 10 C -0.59 -10.18 6.58 72.04 0.47 -9.71 16 11 C 0.05 0.88 4.81 86.45 0.42 1.29 16 12 N -0.55 -8.67 4.48 -877.00 -3.93 -12.60 16 13 C 0.12 1.89 4.14 85.56 0.35 2.24 16 14 C -0.15 -3.77 4.12 -19.83 -0.08 -3.85 16 15 C -0.05 -1.50 9.69 22.25 0.22 -1.29 16 16 C -0.24 -9.79 9.17 22.39 0.21 -9.59 16 17 C 0.12 5.37 6.65 22.58 0.15 5.52 16 18 O -0.25 -13.00 8.59 -22.78 -0.20 -13.20 16 19 C -0.40 -22.96 9.95 67.92 0.68 -22.29 16 20 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 21 C 0.01 0.57 5.49 84.83 0.47 1.04 16 22 N -0.92 -54.71 13.96 21.61 0.30 -54.40 16 23 Si 0.97 44.86 28.62 68.60 1.96 46.83 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 27 C -0.19 -6.72 9.99 22.39 0.22 -6.50 16 28 C -0.06 -1.63 7.59 22.25 0.17 -1.46 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.43 6.36 -2.39 -0.02 0.41 16 31 H 0.07 0.53 6.47 -2.39 -0.02 0.52 16 32 H 0.11 0.56 6.38 -2.38 -0.02 0.55 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.14 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.10 2.28 4.81 -2.39 -0.01 2.27 16 38 H 0.06 1.04 7.93 -2.38 -0.02 1.02 16 39 H 0.06 0.84 7.90 -2.39 -0.02 0.82 16 40 H 0.10 1.42 6.85 -2.39 -0.02 1.40 16 41 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.10 4.85 5.64 -2.91 -0.02 4.84 16 43 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 45 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -75.22 364.61 -1.09 -76.31 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 1.00 Total: 17.11 kcal Atomic # 6 Polarization: -55.89 SS G_CDS: 4.65 Total: -51.24 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -3.63 Total: -67.00 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -4.80 Total: -67.11 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.96 Total: 46.83 kcal Atomic # 16 Polarization: 45.39 SS G_CDS: -0.27 Total: 45.12 kcal Total: -75.22 -1.09 -76.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265502717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.104 kcal (2) G-P(sol) polarization free energy of solvation -75.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds