Wall clock time and date at job start Tue Mar 31 2020 22:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47268 * 2 1 4 4 N 1.46504 * 109.47048 * 120.00017 * 2 1 3 5 5 C 1.46496 * 120.00215 * 121.06416 * 4 2 1 6 6 C 1.52997 * 109.46950 * 269.99792 * 5 4 2 7 7 S 1.81403 * 109.47244 * 179.97438 * 6 5 4 8 8 C 1.81394 * 101.92215 * 179.97438 * 7 6 5 9 9 O 1.42095 * 108.57865 * 294.49304 * 7 6 5 10 10 O 1.42102 * 108.57493 * 65.51272 * 7 6 5 11 11 C 1.34775 * 119.99797 * 301.06042 * 4 2 1 12 12 O 1.21586 * 120.00050 * 213.20308 * 11 4 2 13 13 C 1.47641 * 119.99834 * 33.19832 * 11 4 2 14 14 C 1.40015 * 119.89433 * 137.13315 * 13 11 4 15 15 C 1.36316 * 120.10569 * 180.25548 * 14 13 11 16 16 C 1.40885 * 119.89413 * 359.51918 * 15 14 13 17 17 C 1.41111 * 120.10571 * 180.23241 * 16 15 14 18 18 H 1.07998 * 119.99977 * 213.77467 * 17 16 15 19 19 C 1.40228 * 119.99865 * 33.77272 * 17 16 15 20 20 N 1.30645 * 120.00036 * 6.12036 * 19 17 16 21 21 Si 1.86797 * 119.99809 * 186.11712 * 19 17 16 22 22 H 1.48491 * 109.47402 * 59.99735 * 21 19 17 23 23 H 1.48500 * 109.46867 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47088 * 299.99937 * 21 19 17 25 25 C 1.40889 * 119.78894 * 0.49533 * 16 15 14 26 26 C 1.36317 * 119.89548 * 359.73766 * 25 16 15 27 27 H 1.08999 * 109.47435 * 253.37339 * 1 2 3 28 28 H 1.09002 * 109.47056 * 13.37756 * 1 2 3 29 29 H 1.09002 * 109.46889 * 133.37294 * 1 2 3 30 30 H 1.09004 * 109.47482 * 240.00003 * 2 1 3 31 31 H 1.09001 * 109.46971 * 224.39116 * 3 2 1 32 32 H 1.08996 * 109.46944 * 344.38923 * 3 2 1 33 33 H 1.08992 * 109.47072 * 104.39058 * 3 2 1 34 34 H 1.09002 * 109.46889 * 29.99533 * 5 4 2 35 35 H 1.08995 * 109.47254 * 149.99805 * 5 4 2 36 36 H 1.08994 * 109.47178 * 299.99906 * 6 5 4 37 37 H 1.09003 * 109.46898 * 60.00184 * 6 5 4 38 38 H 1.09001 * 109.47267 * 60.00168 * 8 7 6 39 39 H 1.09000 * 109.47401 * 180.02562 * 8 7 6 40 40 H 1.09004 * 109.47558 * 300.00252 * 8 7 6 41 41 H 1.08002 * 119.94766 * 359.97220 * 14 13 11 42 42 H 1.08001 * 120.05245 * 179.71576 * 15 14 13 43 43 H 0.96993 * 119.99865 * 180.02562 * 20 19 17 44 44 H 1.08008 * 120.05336 * 179.71422 * 25 16 15 45 45 H 1.07999 * 119.94659 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8797 -1.8680 1.0620 6 6 2.0145 -3.1283 0.9998 7 16 3.0810 -4.5862 0.8329 8 6 1.8680 -5.9339 0.7804 9 8 3.7421 -4.5221 -0.4233 10 8 3.8542 -4.7196 2.0176 11 6 1.6751 -0.2427 2.4202 12 8 2.4546 -0.3494 3.3472 13 6 0.3527 0.3775 2.6353 14 6 -0.3915 0.0560 3.7769 15 6 -1.6153 0.6221 3.9772 16 6 -2.1266 1.5397 3.0383 17 6 -3.3908 2.1321 3.2437 18 1 -4.0220 2.3643 2.3987 19 6 -3.8274 2.4192 4.5450 20 7 -3.0192 2.2501 5.5574 21 14 -5.5646 3.0436 4.8307 22 1 -6.5395 2.0372 4.3390 23 1 -5.7764 3.2705 6.2829 24 1 -5.7587 4.3202 4.0972 25 6 -1.3742 1.8597 1.8910 26 6 -0.1535 1.2849 1.6969 27 1 -0.3634 -0.2940 0.9847 28 1 -0.3633 0.9998 -0.2378 29 1 -0.3633 -0.7058 -0.7470 30 1 1.8934 -0.5138 -0.8900 31 1 2.8535 1.5403 -0.7189 32 1 1.2280 2.1150 -0.2765 33 1 2.4019 1.6999 0.9953 34 1 3.4678 -1.7855 0.1480 35 1 3.5487 -1.9285 1.9203 36 1 1.4264 -3.2108 1.9138 37 1 1.3455 -3.0678 0.1414 38 1 1.2027 -5.7910 -0.0710 39 1 2.3876 -6.8868 0.6800 40 1 1.2847 -5.9338 1.7013 41 1 0.0027 -0.6451 4.4976 42 1 -2.1905 0.3700 4.8558 43 1 -3.3214 2.4484 6.4575 44 1 -1.7641 2.5591 1.1662 45 1 0.4242 1.5300 0.8178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270556804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:43 Heat of formation + Delta-G solvation = -5.154369 kcal Electronic energy + Delta-G solvation = -28053.485709 eV Core-core repulsion = 24166.812533 eV Total energy + Delta-G solvation = -3886.673176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60850 -37.48130 -37.16193 -36.46423 -36.21337 -34.39313 -33.19502 -30.50562 -30.09920 -29.74137 -29.28718 -26.78649 -26.09559 -23.80462 -22.59672 -21.50942 -20.65032 -19.06795 -18.40828 -17.60174 -17.04729 -16.58782 -16.31740 -16.13487 -15.81891 -15.46128 -14.96203 -14.82263 -14.14915 -13.84702 -13.59046 -13.53393 -13.47785 -13.42145 -13.20392 -12.67886 -12.65885 -12.29613 -12.24492 -12.16826 -11.98161 -11.96077 -11.62073 -11.45384 -11.43087 -11.27876 -11.21994 -11.15923 -10.90728 -10.80135 -10.63211 -10.09534 -9.84371 -9.37746 -9.25501 -9.10029 -8.32654 -7.63131 -7.14564 -6.89040 -4.61026 -0.25703 2.24353 2.50802 2.92848 2.96691 2.98639 3.00219 3.17920 3.47296 3.52707 3.79194 3.79360 4.46092 4.48212 4.50453 4.52322 4.73098 4.84808 5.14187 5.15995 5.26977 5.33474 5.35302 5.47649 5.66929 5.67799 5.78022 5.93204 5.98646 6.05256 6.20222 6.24507 6.25801 6.64907 6.79121 6.87180 6.95228 7.03890 7.10937 7.45103 7.54874 7.70592 7.85644 7.94877 8.09999 8.44608 8.67211 8.72763 8.77586 10.02672 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.002867 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.807539 B = 9765.607198 C =10316.592370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.143 3.857 3 C -0.176 4.176 4 N -0.632 5.632 5 C 0.135 3.865 6 C -0.631 4.631 7 S 2.424 3.576 8 C -0.655 4.655 9 O -0.942 6.942 10 O -0.936 6.936 11 C 0.588 3.412 12 O -0.542 6.542 13 C -0.299 4.299 14 C -0.042 4.042 15 C -0.178 4.178 16 C 0.138 3.862 17 C -0.455 4.455 18 H 0.081 0.919 19 C 0.072 3.928 20 N -0.786 5.786 21 Si 0.916 3.084 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.252 4.252 26 C -0.059 4.059 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.285 0.715 44 H 0.096 0.904 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -9.556 -10.997 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.040 3.960 3 C -0.234 4.234 4 N -0.368 5.368 5 C 0.010 3.990 6 C -0.762 4.762 7 S 2.605 3.395 8 C -0.805 4.805 9 O -0.939 6.939 10 O -0.933 6.933 11 C 0.384 3.616 12 O -0.420 6.420 13 C -0.304 4.304 14 C -0.061 4.061 15 C -0.198 4.198 16 C 0.135 3.865 17 C -0.484 4.484 18 H 0.099 0.901 19 C -0.147 4.147 20 N -0.411 5.411 21 Si 0.740 3.260 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.272 4.272 26 C -0.077 4.077 27 H 0.139 0.861 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.110 0.890 42 H 0.137 0.863 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.387 -9.618 -10.254 15.055 hybrid contribution -1.876 0.287 0.256 1.915 sum 3.511 -9.331 -9.998 14.119 Atomic orbital electron populations 1.23852 0.94407 1.02396 1.05542 1.21070 0.95080 0.92776 0.87116 1.22650 1.01524 0.95997 1.03226 1.47736 1.52899 1.29948 1.06230 1.20885 0.91408 0.82558 1.04159 1.30913 1.15947 1.16916 1.12418 1.07732 0.77840 0.78616 0.75316 1.30260 1.18815 1.19669 1.11738 1.93590 1.71065 1.85985 1.43304 1.93622 1.65875 1.85320 1.48520 1.18725 0.86364 0.75888 0.80647 1.90670 1.51585 1.56470 1.43231 1.18920 0.96859 1.12678 1.01909 1.20372 0.94385 0.97839 0.93531 1.20952 0.96668 0.99858 1.02302 1.17762 0.91705 0.87095 0.89987 1.19716 1.01262 1.34567 0.92814 0.90110 1.26024 0.99187 0.93869 0.95653 1.69698 1.35852 1.34877 1.00627 0.86242 0.81591 0.80116 0.78089 1.18735 1.20167 1.18849 1.20678 0.96591 1.07086 1.02825 1.21866 0.96521 0.93185 0.96104 0.86085 0.90270 0.94196 0.89691 0.92217 0.90476 0.91259 0.89545 0.88493 0.84554 0.84662 0.85309 0.85339 0.85170 0.89008 0.86332 0.90405 0.88543 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.84 7.71 37.16 0.29 -2.55 16 2 C 0.14 1.84 3.27 -67.93 -0.22 1.62 16 3 C -0.18 -2.22 8.37 37.16 0.31 -1.90 16 4 N -0.63 -9.75 2.39 -167.29 -0.40 -10.15 16 5 C 0.14 1.75 5.58 -4.05 -0.02 1.72 16 6 C -0.63 -6.05 6.13 37.16 0.23 -5.82 16 7 S 2.42 21.72 5.36 -107.50 -0.58 21.14 16 8 C -0.66 -3.53 10.62 101.05 1.07 -2.45 16 9 O -0.94 -11.10 18.10 -57.83 -1.05 -12.15 16 10 O -0.94 -12.48 18.10 -57.83 -1.05 -13.52 16 11 C 0.59 11.76 5.81 -12.42 -0.07 11.69 16 12 O -0.54 -12.62 16.81 5.29 0.09 -12.53 16 13 C -0.30 -6.37 4.30 -104.73 -0.45 -6.82 16 14 C -0.04 -0.97 9.59 -39.61 -0.38 -1.35 16 15 C -0.18 -4.40 8.57 -39.27 -0.34 -4.74 16 16 C 0.14 3.38 5.51 -106.80 -0.59 2.79 16 17 C -0.45 -11.15 9.04 -37.75 -0.34 -11.49 16 18 H 0.08 1.87 7.86 -52.49 -0.41 1.46 16 19 C 0.07 1.70 5.30 -17.31 -0.09 1.61 16 20 N -0.79 -19.45 10.94 55.56 0.61 -18.84 16 21 Si 0.92 17.55 29.57 -169.99 -5.03 12.53 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 C -0.25 -5.50 9.46 -39.27 -0.37 -5.87 16 26 C -0.06 -1.16 4.84 -39.61 -0.19 -1.35 16 27 H 0.12 2.08 4.02 -61.22 -0.25 1.83 16 28 H 0.08 1.08 5.23 -51.93 -0.27 0.81 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.86 7.80 -51.93 -0.41 0.45 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.90 6.15 -51.93 -0.32 0.58 16 33 H 0.07 1.06 6.83 -51.93 -0.35 0.71 16 34 H 0.09 0.90 7.93 -51.93 -0.41 0.49 16 35 H 0.10 1.41 7.37 -51.93 -0.38 1.03 16 36 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.14 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.13 0.46 8.14 -51.92 -0.42 0.03 16 39 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 42 H 0.12 3.04 6.44 -52.49 -0.34 2.71 16 43 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 44 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 45 H 0.14 2.28 1.05 -54.02 -0.06 2.22 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -34.15 368.75 -9.15 -43.30 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.14 Total: 9.60 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -1.17 Total: -24.92 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: 0.21 Total: -28.99 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -2.00 Total: -38.21 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: 21.72 SS G_CDS: -0.58 Total: 21.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.15 -9.15 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270556804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.143 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds