Wall clock time and date at job start Tue Mar 31 2020 22:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47268 * 2 1 4 4 N 1.46504 * 109.47048 * 120.00017 * 2 1 3 5 5 C 1.46496 * 120.00215 * 121.06416 * 4 2 1 6 6 C 1.52997 * 109.46950 * 269.99792 * 5 4 2 7 7 S 1.81403 * 109.47244 * 179.97438 * 6 5 4 8 8 C 1.81394 * 101.92215 * 179.97438 * 7 6 5 9 9 O 1.42095 * 108.57865 * 294.49304 * 7 6 5 10 10 O 1.42102 * 108.57493 * 65.51272 * 7 6 5 11 11 C 1.34775 * 119.99797 * 301.06042 * 4 2 1 12 12 O 1.21586 * 120.00050 * 213.20308 * 11 4 2 13 13 C 1.47641 * 119.99834 * 33.19832 * 11 4 2 14 14 C 1.40015 * 119.89433 * 137.13315 * 13 11 4 15 15 C 1.36316 * 120.10569 * 180.25548 * 14 13 11 16 16 C 1.40885 * 119.89413 * 359.51918 * 15 14 13 17 17 C 1.41111 * 120.10571 * 180.23241 * 16 15 14 18 18 H 1.07998 * 119.99977 * 213.77467 * 17 16 15 19 19 C 1.40228 * 119.99865 * 33.77272 * 17 16 15 20 20 N 1.30645 * 120.00036 * 6.12036 * 19 17 16 21 21 Si 1.86797 * 119.99809 * 186.11712 * 19 17 16 22 22 H 1.48491 * 109.47402 * 59.99735 * 21 19 17 23 23 H 1.48500 * 109.46867 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47088 * 299.99937 * 21 19 17 25 25 C 1.40889 * 119.78894 * 0.49533 * 16 15 14 26 26 C 1.36317 * 119.89548 * 359.73766 * 25 16 15 27 27 H 1.08999 * 109.47435 * 253.37339 * 1 2 3 28 28 H 1.09002 * 109.47056 * 13.37756 * 1 2 3 29 29 H 1.09002 * 109.46889 * 133.37294 * 1 2 3 30 30 H 1.09004 * 109.47482 * 240.00003 * 2 1 3 31 31 H 1.09001 * 109.46971 * 224.39116 * 3 2 1 32 32 H 1.08996 * 109.46944 * 344.38923 * 3 2 1 33 33 H 1.08992 * 109.47072 * 104.39058 * 3 2 1 34 34 H 1.09002 * 109.46889 * 29.99533 * 5 4 2 35 35 H 1.08995 * 109.47254 * 149.99805 * 5 4 2 36 36 H 1.08994 * 109.47178 * 299.99906 * 6 5 4 37 37 H 1.09003 * 109.46898 * 60.00184 * 6 5 4 38 38 H 1.09001 * 109.47267 * 60.00168 * 8 7 6 39 39 H 1.09000 * 109.47401 * 180.02562 * 8 7 6 40 40 H 1.09004 * 109.47558 * 300.00252 * 8 7 6 41 41 H 1.08002 * 119.94766 * 359.97220 * 14 13 11 42 42 H 1.08001 * 120.05245 * 179.71576 * 15 14 13 43 43 H 0.96993 * 119.99865 * 180.02562 * 20 19 17 44 44 H 1.08008 * 120.05336 * 179.71422 * 25 16 15 45 45 H 1.07999 * 119.94659 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8797 -1.8680 1.0620 6 6 2.0145 -3.1283 0.9998 7 16 3.0810 -4.5862 0.8329 8 6 1.8680 -5.9339 0.7804 9 8 3.7421 -4.5221 -0.4233 10 8 3.8542 -4.7196 2.0176 11 6 1.6751 -0.2427 2.4202 12 8 2.4546 -0.3494 3.3472 13 6 0.3527 0.3775 2.6353 14 6 -0.3915 0.0560 3.7769 15 6 -1.6153 0.6221 3.9772 16 6 -2.1266 1.5397 3.0383 17 6 -3.3908 2.1321 3.2437 18 1 -4.0220 2.3643 2.3987 19 6 -3.8274 2.4192 4.5450 20 7 -3.0192 2.2501 5.5574 21 14 -5.5646 3.0436 4.8307 22 1 -6.5395 2.0372 4.3390 23 1 -5.7764 3.2705 6.2829 24 1 -5.7587 4.3202 4.0972 25 6 -1.3742 1.8597 1.8910 26 6 -0.1535 1.2849 1.6969 27 1 -0.3634 -0.2940 0.9847 28 1 -0.3633 0.9998 -0.2378 29 1 -0.3633 -0.7058 -0.7470 30 1 1.8934 -0.5138 -0.8900 31 1 2.8535 1.5403 -0.7189 32 1 1.2280 2.1150 -0.2765 33 1 2.4019 1.6999 0.9953 34 1 3.4678 -1.7855 0.1480 35 1 3.5487 -1.9285 1.9203 36 1 1.4264 -3.2108 1.9138 37 1 1.3455 -3.0678 0.1414 38 1 1.2027 -5.7910 -0.0710 39 1 2.3876 -6.8868 0.6800 40 1 1.2847 -5.9338 1.7013 41 1 0.0027 -0.6451 4.4976 42 1 -2.1905 0.3700 4.8558 43 1 -3.3214 2.4484 6.4575 44 1 -1.7641 2.5591 1.1662 45 1 0.4242 1.5300 0.8178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270556804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:42 Heat of formation + Delta-G solvation = -28.947213 kcal Electronic energy + Delta-G solvation = -28054.517444 eV Core-core repulsion = 24166.812533 eV Total energy + Delta-G solvation = -3887.704911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.04813 -39.13675 -38.01284 -37.92304 -37.06911 -35.89214 -34.57883 -32.04501 -31.49872 -30.82213 -30.27978 -27.96038 -27.71270 -25.04627 -23.91095 -23.07885 -22.32026 -19.90163 -19.81249 -19.24370 -18.11740 -17.85078 -17.25066 -17.17062 -16.95553 -16.83405 -16.35764 -16.21130 -15.35883 -15.09157 -15.07199 -14.96080 -14.56885 -14.32694 -14.02975 -13.92318 -13.69740 -13.59785 -13.45266 -13.37141 -13.21349 -13.13850 -13.04544 -12.93988 -12.79283 -12.58051 -12.36380 -12.13240 -12.04817 -11.97308 -11.76829 -11.61652 -11.50061 -11.08316 -10.81643 -10.72767 -9.63282 -9.39708 -8.83394 -8.63778 -6.46119 -0.96117 0.53266 1.21876 1.38990 1.42220 1.51431 1.78969 1.84196 2.08715 2.18957 2.73007 2.75627 3.11350 3.60894 3.63828 3.67297 3.87144 4.02971 4.11772 4.11986 4.18193 4.25523 4.33375 4.38745 4.49911 4.57766 4.78299 4.82542 4.85516 4.97329 4.98439 5.00801 5.04483 5.09578 5.21536 5.24844 5.33172 5.53123 5.66942 5.76938 5.82240 6.00674 6.06018 6.27308 6.46736 6.63038 6.85769 6.95458 7.20539 8.29733 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.002867 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.807539 B = 9765.607198 C =10316.592370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.135 3.865 3 C -0.182 4.182 4 N -0.622 5.622 5 C 0.119 3.881 6 C -0.631 4.631 7 S 2.437 3.563 8 C -0.634 4.634 9 O -0.971 6.971 10 O -0.990 6.990 11 C 0.590 3.410 12 O -0.587 6.587 13 C -0.300 4.300 14 C -0.055 4.055 15 C -0.200 4.200 16 C 0.111 3.889 17 C -0.487 4.487 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.826 5.826 21 Si 0.989 3.011 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.262 4.262 26 C -0.040 4.040 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.037 0.963 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.169 0.831 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.289 0.711 44 H 0.114 0.886 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.280 -10.227 -14.503 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.033 3.967 3 C -0.239 4.239 4 N -0.356 5.356 5 C -0.005 4.005 6 C -0.760 4.760 7 S 2.622 3.378 8 C -0.788 4.788 9 O -0.968 6.968 10 O -0.987 6.987 11 C 0.385 3.615 12 O -0.468 6.468 13 C -0.305 4.305 14 C -0.075 4.075 15 C -0.220 4.220 16 C 0.109 3.891 17 C -0.516 4.516 18 H 0.106 0.894 19 C -0.186 4.186 20 N -0.452 5.452 21 Si 0.809 3.191 22 H -0.180 1.180 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.281 4.281 26 C -0.057 4.057 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.056 0.944 34 H 0.136 0.864 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.187 0.813 38 H 0.177 0.823 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.132 0.868 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.672 -10.275 -13.812 17.837 hybrid contribution -1.525 0.357 1.203 1.975 sum 3.147 -9.919 -12.609 16.348 Atomic orbital electron populations 1.23686 0.94969 1.03450 1.04241 1.21447 0.94591 0.93342 0.87300 1.22697 1.03040 0.95874 1.02300 1.47696 1.52266 1.30279 1.05371 1.21171 0.91779 0.82912 1.04625 1.30868 1.15909 1.15558 1.13707 1.07112 0.78115 0.79070 0.73481 1.30071 1.17562 1.17154 1.13966 1.93546 1.72745 1.86658 1.43885 1.93559 1.68556 1.86183 1.50419 1.18546 0.85551 0.75586 0.81831 1.90651 1.52617 1.58304 1.45187 1.19201 0.97313 1.12573 1.01365 1.20440 0.94481 0.98071 0.94480 1.20811 0.97362 1.01423 1.02379 1.18099 0.92606 0.87373 0.91063 1.20019 1.01928 1.35853 0.93773 0.89375 1.26928 1.03118 0.93540 0.94992 1.69795 1.37908 1.36304 1.01180 0.85146 0.76275 0.79664 0.78022 1.18019 1.19796 1.18082 1.20915 0.97167 1.07609 1.02415 1.22300 0.95861 0.91079 0.96431 0.89726 0.89906 0.90977 0.85253 0.89119 0.89314 0.94429 0.86421 0.91126 0.85139 0.81300 0.82335 0.83877 0.83722 0.89716 0.88532 0.90069 0.86772 0.80299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.97 7.71 71.98 0.56 -4.41 16 2 C 0.14 2.96 3.27 44.99 0.15 3.11 16 3 C -0.18 -3.94 8.37 71.98 0.60 -3.34 16 4 N -0.62 -18.15 2.39 -801.43 -1.92 -20.07 16 5 C 0.12 2.90 5.58 86.38 0.48 3.38 16 6 C -0.63 -10.75 6.13 71.98 0.44 -10.31 16 7 S 2.44 39.72 5.36 -56.49 -0.30 39.42 16 8 C -0.63 -4.43 10.62 113.37 1.20 -3.22 16 9 O -0.97 -20.98 18.10 -127.37 -2.31 -23.28 16 10 O -0.99 -26.70 18.10 -127.37 -2.30 -29.01 16 11 C 0.59 23.86 5.81 86.73 0.50 24.37 16 12 O -0.59 -28.43 16.81 -3.99 -0.07 -28.50 16 13 C -0.30 -13.02 4.30 -19.93 -0.09 -13.11 16 14 C -0.06 -2.72 9.59 22.25 0.21 -2.50 16 15 C -0.20 -10.48 8.57 22.47 0.19 -10.29 16 16 C 0.11 5.66 5.51 -21.28 -0.12 5.54 16 17 C -0.49 -24.50 9.04 23.46 0.21 -24.29 16 18 H 0.09 4.13 7.86 -2.91 -0.02 4.10 16 19 C 0.03 1.43 5.30 85.35 0.45 1.88 16 20 N -0.83 -42.79 10.94 21.87 0.24 -42.55 16 21 Si 0.99 36.33 29.57 68.60 2.03 38.36 16 22 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 23 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 25 C -0.26 -11.39 9.46 22.47 0.21 -11.18 16 26 C -0.04 -1.53 4.84 22.25 0.11 -1.42 16 27 H 0.08 2.75 4.02 -11.11 -0.04 2.71 16 28 H 0.08 1.94 5.23 -2.39 -0.01 1.93 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.13 1.80 7.80 -2.38 -0.02 1.79 16 31 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.73 6.15 -2.39 -0.01 1.71 16 33 H 0.04 1.08 6.83 -2.39 -0.02 1.06 16 34 H 0.12 2.10 7.93 -2.39 -0.02 2.08 16 35 H 0.07 2.11 7.37 -2.39 -0.02 2.09 16 36 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.17 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.14 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.10 5.37 6.44 -2.91 -0.02 5.35 16 43 H 0.29 13.66 8.29 -92.71 -0.77 12.89 16 44 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 45 H 0.18 5.42 1.05 -4.35 0.00 5.42 16 Total: -1.00 -80.41 368.75 1.47 -78.93 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 0.98 Total: 32.47 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 5.12 Total: -45.78 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -1.68 Total: -62.62 kcal Atomic # 8 Polarization: -76.11 SS G_CDS: -4.68 Total: -80.78 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Atomic # 16 Polarization: 39.72 SS G_CDS: -0.30 Total: 39.42 kcal Total: -80.41 1.47 -78.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270556804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.986 kcal (2) G-P(sol) polarization free energy of solvation -80.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds