Wall clock time and date at job start Tue Mar 31 2020 23:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47160 * 2 1 4 4 S 1.81395 * 109.47164 * 180.02562 * 3 2 1 5 5 O 1.42098 * 110.54876 * 74.09952 * 4 3 2 6 6 O 1.42108 * 110.54131 * 297.34842 * 4 3 2 7 7 C 1.76199 * 104.44829 * 185.72893 * 4 3 2 8 8 C 1.37981 * 120.07540 * 107.33469 * 7 4 3 9 9 C 1.38341 * 120.14076 * 179.97438 * 8 7 4 10 10 C 1.38378 * 120.29725 * 0.02562 * 9 8 7 11 11 C 1.37933 * 120.14209 * 0.02562 * 10 9 8 12 12 C 1.39562 * 120.07327 * 287.05939 * 7 4 3 13 13 C 1.47846 * 120.13795 * 359.97438 * 12 7 4 14 14 O 1.21553 * 120.00284 * 64.90553 * 13 12 7 15 15 N 1.34783 * 119.99814 * 244.89733 * 13 12 7 16 16 C 1.46492 * 119.99880 * 355.06137 * 15 13 12 17 17 C 1.53000 * 109.47312 * 94.51855 * 16 15 13 18 18 C 1.46496 * 119.99775 * 175.05764 * 15 13 12 19 19 C 1.50701 * 109.47258 * 90.00290 * 18 15 13 20 20 H 1.07997 * 120.00024 * 0.02562 * 19 18 15 21 21 C 1.37878 * 119.99920 * 179.97438 * 19 18 15 22 22 N 1.31511 * 120.00356 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99853 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47081 * 59.99652 * 23 21 19 25 25 H 1.48494 * 109.47224 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46930 * 299.99992 * 23 21 19 27 27 H 1.09004 * 109.47229 * 299.99872 * 1 2 3 28 28 H 1.09006 * 109.47588 * 59.99770 * 1 2 3 29 29 H 1.08996 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47229 * 240.00128 * 2 1 3 31 31 H 1.08997 * 109.47444 * 120.00089 * 2 1 3 32 32 H 1.08994 * 109.47090 * 60.00007 * 3 2 1 33 33 H 1.09000 * 109.46913 * 299.99846 * 3 2 1 34 34 H 1.07992 * 119.92886 * 0.02562 * 8 7 4 35 35 H 1.08009 * 119.84777 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.92879 * 179.97438 * 10 9 8 37 37 H 1.08003 * 120.07193 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.47100 * 214.51705 * 16 15 13 39 39 H 1.08997 * 109.47378 * 334.51479 * 16 15 13 40 40 H 1.09002 * 109.47047 * 179.97438 * 17 16 15 41 41 H 1.09004 * 109.46916 * 299.99962 * 17 16 15 42 42 H 1.08997 * 109.47206 * 59.99519 * 17 16 15 43 43 H 1.09005 * 109.47023 * 210.00618 * 18 15 13 44 44 H 1.09006 * 109.47595 * 330.00239 * 18 15 13 45 45 H 0.96996 * 120.00318 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8539 1.4426 -0.0008 5 8 4.3521 1.0782 -1.2807 6 8 4.3530 0.8311 1.1809 7 6 4.2936 3.1403 0.1696 8 6 4.8112 3.6043 1.3616 9 6 5.1573 4.9368 1.4967 10 6 4.9869 5.8130 0.4393 11 6 4.4696 5.3623 -0.7573 12 6 4.1246 4.0175 -0.9026 13 6 3.5768 3.5258 -2.1847 14 8 2.4355 3.1109 -2.2389 15 7 4.3428 3.5377 -3.2936 16 6 5.6791 4.1366 -3.2543 17 6 6.7181 3.0480 -2.9778 18 6 3.8391 2.9515 -4.5382 19 6 3.1141 4.0068 -5.3331 20 1 3.0367 5.0135 -4.9498 21 6 2.5506 3.6873 -6.5502 22 7 2.6461 2.4618 -7.0177 23 14 1.6525 4.9956 -7.5358 24 1 2.5873 6.1048 -7.8534 25 1 1.1429 4.4018 -8.7978 26 1 0.5139 5.5204 -6.7399 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 4.9470 2.9256 2.1905 35 1 5.5617 5.2950 2.4320 36 1 5.2588 6.8522 0.5514 37 1 4.3367 6.0472 -1.5817 38 1 5.8940 4.6088 -4.2130 39 1 5.7185 4.8857 -2.4635 40 1 7.7124 3.4936 -2.9490 41 1 6.5032 2.5758 -2.0192 42 1 6.6787 2.2990 -3.7687 43 1 4.6747 2.5664 -5.1227 44 1 3.1531 2.1372 -4.3048 45 1 2.2500 2.2372 -7.8741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271097435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:47 Heat of formation + Delta-G solvation = -76.331296 kcal Electronic energy + Delta-G solvation = -29033.032899 eV Core-core repulsion = 25143.273260 eV Total energy + Delta-G solvation = -3889.759639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.13293 -38.17534 -36.81868 -35.75018 -35.47456 -34.72799 -32.84201 -31.50228 -31.32301 -30.05099 -27.62292 -27.17725 -24.28205 -23.50747 -22.91060 -22.13697 -21.72007 -19.47641 -18.63800 -17.55354 -16.86182 -16.42462 -16.21051 -16.19042 -15.77433 -15.25134 -15.13768 -14.55049 -14.47760 -14.27256 -13.82499 -13.51057 -13.32914 -13.16853 -12.99987 -12.64629 -12.56299 -12.32826 -12.14592 -11.97260 -11.88618 -11.80619 -11.76136 -11.45215 -11.37561 -11.20538 -10.90502 -10.84783 -10.77350 -10.67282 -10.54309 -10.28244 -10.15120 -9.65528 -9.47518 -9.26287 -8.97481 -8.42520 -7.71200 -6.03530 -4.08746 0.19141 0.67855 1.02742 2.95195 3.06684 3.30976 3.32156 3.35751 3.38091 3.75624 3.96065 4.29942 4.42827 4.62901 4.66055 4.74179 4.76692 4.88564 5.07955 5.15066 5.22126 5.30444 5.41349 5.44203 5.46437 5.63979 5.68071 5.72857 5.77863 5.86725 5.92440 6.01235 6.02964 6.09244 6.11951 6.15372 6.23672 6.34320 6.61286 6.68122 7.04354 7.48664 7.49507 7.91260 8.22180 8.30080 8.75981 8.96903 9.55333 11.04409 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.004857 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.504154 B = 5763.723231 C = 7028.167949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.610 4.610 4 S 2.481 3.519 5 O -0.915 6.915 6 O -0.951 6.951 7 C -0.630 4.630 8 C -0.028 4.028 9 C -0.134 4.134 10 C -0.069 4.069 11 C -0.115 4.115 12 C -0.011 4.011 13 C 0.537 3.463 14 O -0.536 6.536 15 N -0.562 5.562 16 C 0.095 3.905 17 C -0.168 4.168 18 C 0.248 3.752 19 C -0.528 4.528 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.892 5.892 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.175 0.825 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.049 0.951 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 2.835 17.579 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.741 4.741 4 S 2.662 3.338 5 O -0.912 6.912 6 O -0.948 6.948 7 C -0.717 4.717 8 C -0.047 4.047 9 C -0.153 4.153 10 C -0.087 4.087 11 C -0.134 4.134 12 C -0.015 4.015 13 C 0.322 3.678 14 O -0.416 6.416 15 N -0.290 5.290 16 C -0.028 4.028 17 C -0.226 4.226 18 C 0.129 3.871 19 C -0.567 4.567 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.531 5.531 23 Si 0.725 3.275 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.145 0.855 33 H 0.192 0.808 34 H 0.164 0.836 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.073 1.820 17.245 17.813 hybrid contribution -0.777 1.730 -0.503 1.962 sum 3.296 3.550 16.742 17.429 Atomic orbital electron populations 1.21693 0.93737 1.02020 1.02702 1.21256 0.98827 0.91968 1.03234 1.30588 1.22675 1.06495 1.14342 1.05881 0.78808 0.74114 0.74968 1.93661 1.77332 1.80443 1.39774 1.93515 1.78351 1.73888 1.49052 1.30692 1.15571 1.25119 1.00276 1.20937 0.92308 0.96258 0.95179 1.21366 1.01126 0.93439 0.99399 1.21393 0.94903 0.99996 0.92431 1.21405 0.98813 0.94545 0.98610 1.20004 0.93737 0.94241 0.93518 1.18128 0.86067 0.80072 0.83502 1.90616 1.17131 1.48771 1.85096 1.48083 1.14413 1.55245 1.11240 1.21682 0.82804 0.95563 1.02799 1.22163 0.97807 0.99752 1.02868 1.19377 0.95265 0.94375 0.78044 1.21373 1.35440 0.96412 1.03489 0.92521 1.24914 0.96086 0.95533 0.97427 1.69927 1.45016 1.18128 1.19999 0.86576 0.80119 0.81573 0.79217 1.20300 1.21168 1.20233 0.92505 0.91586 0.92127 0.90217 0.90827 0.85473 0.80787 0.83588 0.84900 0.84801 0.84308 0.89669 0.91305 0.92463 0.92508 0.91633 0.94493 0.93277 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.91 37.15 0.37 -1.26 16 2 C -0.11 -1.47 5.94 -26.73 -0.16 -1.63 16 3 C -0.61 -8.72 5.75 37.16 0.21 -8.51 16 4 S 2.48 40.19 4.58 -107.50 -0.49 39.70 16 5 O -0.92 -18.29 16.12 -58.61 -0.94 -19.24 16 6 O -0.95 -15.65 16.79 -57.54 -0.97 -16.61 16 7 C -0.63 -9.58 5.65 -39.18 -0.22 -9.80 16 8 C -0.03 -0.34 9.49 -39.64 -0.38 -0.72 16 9 C -0.13 -1.33 10.04 -39.49 -0.40 -1.73 16 10 C -0.07 -0.70 10.03 -39.64 -0.40 -1.10 16 11 C -0.11 -1.53 7.67 -39.19 -0.30 -1.83 16 12 C -0.01 -0.18 4.80 -104.97 -0.50 -0.68 16 13 C 0.54 11.28 4.90 -12.33 -0.06 11.22 16 14 O -0.54 -12.54 13.17 5.31 0.07 -12.47 16 15 N -0.56 -12.25 2.46 -176.18 -0.43 -12.68 16 16 C 0.10 1.65 5.96 -4.05 -0.02 1.63 16 17 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 18 C 0.25 6.54 5.14 -5.20 -0.03 6.51 16 19 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 20 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 23 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.17 2.95 4.93 -51.92 -0.26 2.69 16 34 H 0.15 1.54 7.25 -52.49 -0.38 1.16 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.14 1.74 7.68 -52.48 -0.40 1.34 16 38 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 39 H 0.07 1.01 4.75 -51.93 -0.25 0.76 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 44 H 0.05 1.45 7.50 -51.93 -0.39 1.06 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -34.98 381.41 -9.94 -44.92 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.71 Total: 3.33 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -1.92 Total: -23.65 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.30 Total: -38.29 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -1.84 Total: -48.32 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 40.19 SS G_CDS: -0.49 Total: 39.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.98 -9.94 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271097435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.412 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds