Wall clock time and date at job start Tue Mar 31 2020 23:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47160 * 2 1 4 4 S 1.81395 * 109.47164 * 180.02562 * 3 2 1 5 5 O 1.42098 * 110.54876 * 74.09952 * 4 3 2 6 6 O 1.42108 * 110.54131 * 297.34842 * 4 3 2 7 7 C 1.76199 * 104.44829 * 185.72893 * 4 3 2 8 8 C 1.37981 * 120.07540 * 107.33469 * 7 4 3 9 9 C 1.38341 * 120.14076 * 179.97438 * 8 7 4 10 10 C 1.38378 * 120.29725 * 0.02562 * 9 8 7 11 11 C 1.37933 * 120.14209 * 0.02562 * 10 9 8 12 12 C 1.39562 * 120.07327 * 287.05939 * 7 4 3 13 13 C 1.47846 * 120.13795 * 359.97438 * 12 7 4 14 14 O 1.21553 * 120.00284 * 64.90553 * 13 12 7 15 15 N 1.34783 * 119.99814 * 244.89733 * 13 12 7 16 16 C 1.46492 * 119.99880 * 355.06137 * 15 13 12 17 17 C 1.53000 * 109.47312 * 94.51855 * 16 15 13 18 18 C 1.46496 * 119.99775 * 175.05764 * 15 13 12 19 19 C 1.50701 * 109.47258 * 90.00290 * 18 15 13 20 20 H 1.07997 * 120.00024 * 0.02562 * 19 18 15 21 21 C 1.37878 * 119.99920 * 179.97438 * 19 18 15 22 22 N 1.31511 * 120.00356 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99853 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47081 * 59.99652 * 23 21 19 25 25 H 1.48494 * 109.47224 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46930 * 299.99992 * 23 21 19 27 27 H 1.09004 * 109.47229 * 299.99872 * 1 2 3 28 28 H 1.09006 * 109.47588 * 59.99770 * 1 2 3 29 29 H 1.08996 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47229 * 240.00128 * 2 1 3 31 31 H 1.08997 * 109.47444 * 120.00089 * 2 1 3 32 32 H 1.08994 * 109.47090 * 60.00007 * 3 2 1 33 33 H 1.09000 * 109.46913 * 299.99846 * 3 2 1 34 34 H 1.07992 * 119.92886 * 0.02562 * 8 7 4 35 35 H 1.08009 * 119.84777 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.92879 * 179.97438 * 10 9 8 37 37 H 1.08003 * 120.07193 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.47100 * 214.51705 * 16 15 13 39 39 H 1.08997 * 109.47378 * 334.51479 * 16 15 13 40 40 H 1.09002 * 109.47047 * 179.97438 * 17 16 15 41 41 H 1.09004 * 109.46916 * 299.99962 * 17 16 15 42 42 H 1.08997 * 109.47206 * 59.99519 * 17 16 15 43 43 H 1.09005 * 109.47023 * 210.00618 * 18 15 13 44 44 H 1.09006 * 109.47595 * 330.00239 * 18 15 13 45 45 H 0.96996 * 120.00318 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 16 3.8539 1.4426 -0.0008 5 8 4.3521 1.0782 -1.2807 6 8 4.3530 0.8311 1.1809 7 6 4.2936 3.1403 0.1696 8 6 4.8112 3.6043 1.3616 9 6 5.1573 4.9368 1.4967 10 6 4.9869 5.8130 0.4393 11 6 4.4696 5.3623 -0.7573 12 6 4.1246 4.0175 -0.9026 13 6 3.5768 3.5258 -2.1847 14 8 2.4355 3.1109 -2.2389 15 7 4.3428 3.5377 -3.2936 16 6 5.6791 4.1366 -3.2543 17 6 6.7181 3.0480 -2.9778 18 6 3.8391 2.9515 -4.5382 19 6 3.1141 4.0068 -5.3331 20 1 3.0367 5.0135 -4.9498 21 6 2.5506 3.6873 -6.5502 22 7 2.6461 2.4618 -7.0177 23 14 1.6525 4.9956 -7.5358 24 1 2.5873 6.1048 -7.8534 25 1 1.1429 4.4018 -8.7978 26 1 0.5139 5.5204 -6.7399 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 4.9470 2.9256 2.1905 35 1 5.5617 5.2950 2.4320 36 1 5.2588 6.8522 0.5514 37 1 4.3367 6.0472 -1.5817 38 1 5.8940 4.6088 -4.2130 39 1 5.7185 4.8857 -2.4635 40 1 7.7124 3.4936 -2.9490 41 1 6.5032 2.5758 -2.0192 42 1 6.6787 2.2990 -3.7687 43 1 4.6747 2.5664 -5.1227 44 1 3.1531 2.1372 -4.3048 45 1 2.2500 2.2372 -7.8741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271097435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:45 Heat of formation + Delta-G solvation = -100.130855 kcal Electronic energy + Delta-G solvation = -29034.064925 eV Core-core repulsion = 25143.273260 eV Total energy + Delta-G solvation = -3890.791665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.47420 -39.42527 -38.15931 -37.12495 -37.09675 -35.80759 -34.92112 -32.56846 -32.41338 -31.62939 -29.13832 -28.63294 -25.82474 -24.77878 -24.30363 -23.53945 -22.76226 -20.88407 -19.90592 -18.87102 -18.58175 -18.11342 -17.55620 -17.50544 -17.25694 -16.50331 -16.36025 -16.05755 -15.76456 -15.46946 -15.27534 -14.81501 -14.69383 -14.43457 -14.25636 -14.08834 -13.66885 -13.63352 -13.43990 -13.38202 -13.29134 -13.20488 -13.12737 -13.07867 -12.76415 -12.57899 -12.49376 -12.39040 -12.18437 -12.02175 -11.92805 -11.86432 -11.72321 -11.43537 -10.80342 -10.63590 -10.43483 -10.05497 -9.48575 -8.20852 -6.36577 -1.00485 -0.36557 0.05762 1.36985 1.41566 1.48898 1.56854 1.77672 2.14901 2.35549 2.43717 2.76012 3.08241 3.10528 3.34364 3.55165 3.70026 3.84398 3.99210 4.06297 4.14215 4.24543 4.25182 4.36186 4.40933 4.46377 4.54747 4.63497 4.73263 4.75892 4.83494 4.90875 4.96937 5.01035 5.01955 5.04635 5.15950 5.22183 5.26629 5.27125 5.34639 5.56798 5.74992 5.80156 6.04396 6.59497 6.72755 7.16455 7.35573 8.86655 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011014 B = 0.004857 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.504154 B = 5763.723231 C = 7028.167949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C -0.601 4.601 4 S 2.475 3.525 5 O -0.969 6.969 6 O -0.959 6.959 7 C -0.639 4.639 8 C -0.032 4.032 9 C -0.114 4.114 10 C -0.050 4.050 11 C -0.121 4.121 12 C -0.039 4.039 13 C 0.531 3.469 14 O -0.575 6.575 15 N -0.575 5.575 16 C 0.090 3.910 17 C -0.161 4.161 18 C 0.266 3.734 19 C -0.542 4.542 20 H 0.058 0.942 21 C 0.008 3.992 22 N -0.929 5.929 23 Si 0.970 3.030 24 H -0.259 1.259 25 H -0.280 1.280 26 H -0.275 1.275 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.019 0.981 44 H 0.000 1.000 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 6.241 20.511 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.734 4.734 4 S 2.662 3.338 5 O -0.966 6.966 6 O -0.956 6.956 7 C -0.728 4.728 8 C -0.050 4.050 9 C -0.132 4.132 10 C -0.068 4.068 11 C -0.140 4.140 12 C -0.043 4.043 13 C 0.318 3.682 14 O -0.458 6.458 15 N -0.303 5.303 16 C -0.032 4.032 17 C -0.220 4.220 18 C 0.145 3.855 19 C -0.580 4.580 20 H 0.077 0.923 21 C -0.191 4.191 22 N -0.568 5.568 23 Si 0.794 3.206 24 H -0.184 1.184 25 H -0.205 1.205 26 H -0.201 1.201 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.180 0.820 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.198 0.802 36 H 0.198 0.802 37 H 0.161 0.839 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.018 0.982 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.944 5.213 20.197 21.437 hybrid contribution -1.009 0.683 -1.269 1.759 sum 3.936 5.896 18.929 20.212 Atomic orbital electron populations 1.21721 0.92320 1.03319 1.02754 1.21432 1.00174 0.91192 1.03565 1.30481 1.20750 1.07544 1.14593 1.05653 0.79489 0.74913 0.73777 1.93603 1.78861 1.82063 1.42081 1.93486 1.78934 1.74745 1.48441 1.30321 1.17511 1.23547 1.01441 1.21300 0.91545 0.98059 0.94143 1.21940 0.98415 0.91882 1.00986 1.21899 0.92181 1.02184 0.90506 1.21599 0.98990 0.92857 1.00591 1.19569 0.97219 0.96133 0.91364 1.18889 0.85533 0.78941 0.84815 1.90589 1.18998 1.50116 1.86059 1.48044 1.16271 1.55720 1.10234 1.21955 0.80799 0.96416 1.04010 1.22117 0.99660 0.98993 1.01187 1.18753 0.93523 0.93182 0.80026 1.21638 1.35789 0.96589 1.03993 0.92341 1.25892 0.96770 0.97880 0.98591 1.70073 1.45924 1.20325 1.20525 0.85431 0.78818 0.78876 0.77441 1.18376 1.20486 1.20075 0.90415 0.93538 0.90267 0.92032 0.88468 0.82032 0.83503 0.81964 0.80176 0.80179 0.83854 0.89818 0.87885 0.88382 0.93580 0.94248 0.96345 0.98176 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.12 -3.35 5.94 30.59 0.18 -3.17 16 3 C -0.60 -17.92 5.75 71.98 0.41 -17.51 16 4 S 2.48 83.50 4.58 -56.49 -0.26 83.25 16 5 O -0.97 -42.30 16.12 -126.62 -2.04 -44.34 16 6 O -0.96 -31.61 16.79 -127.65 -2.14 -33.76 16 7 C -0.64 -18.97 5.65 22.53 0.13 -18.84 16 8 C -0.03 -0.67 9.49 22.23 0.21 -0.45 16 9 C -0.11 -1.58 10.04 22.33 0.22 -1.36 16 10 C -0.05 -0.74 10.03 22.23 0.22 -0.51 16 11 C -0.12 -2.90 7.67 22.52 0.17 -2.73 16 12 C -0.04 -1.28 4.80 -20.09 -0.10 -1.37 16 13 C 0.53 23.50 4.90 86.79 0.42 23.92 16 14 O -0.57 -29.11 13.17 -3.88 -0.05 -29.16 16 15 N -0.58 -26.57 2.46 -829.57 -2.04 -28.61 16 16 C 0.09 3.18 5.96 86.38 0.51 3.70 16 17 C -0.16 -5.33 10.24 71.98 0.74 -4.59 16 18 C 0.27 15.19 5.14 85.63 0.44 15.64 16 19 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 20 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 21 C 0.01 0.45 5.46 84.66 0.46 0.91 16 22 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 23 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.16 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.15 5.43 4.93 -2.39 -0.01 5.41 16 34 H 0.16 2.84 7.25 -2.91 -0.02 2.82 16 35 H 0.18 0.93 8.06 -2.91 -0.02 0.90 16 36 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.14 3.24 7.68 -2.91 -0.02 3.22 16 38 H 0.08 2.92 8.11 -2.38 -0.02 2.90 16 39 H 0.10 2.88 4.75 -2.39 -0.01 2.87 16 40 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.02 1.09 8.07 -2.38 -0.02 1.07 16 44 H 0.00 0.01 7.50 -2.38 -0.02 -0.01 16 45 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -84.04 381.41 1.75 -82.29 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.98 Total: 20.76 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 4.99 Total: -40.36 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.75 Total: -85.72 kcal Atomic # 8 Polarization: -103.02 SS G_CDS: -4.23 Total: -107.25 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 83.50 SS G_CDS: -0.26 Total: 83.25 kcal Total: -84.04 1.75 -82.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271097435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.841 kcal (2) G-P(sol) polarization free energy of solvation -84.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds