Wall clock time and date at job start Tue Mar 31 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47158 * 2 1 4 4 N 1.46497 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.36941 * 120.00010 * 274.99910 * 4 3 2 6 6 H 1.08003 * 119.99774 * 146.61468 * 5 4 3 7 7 C 1.38805 * 120.00067 * 326.62241 * 5 4 3 8 8 N 1.31620 * 120.00262 * 335.98940 * 7 5 4 9 9 Si 1.86806 * 119.99794 * 155.98362 * 7 5 4 10 10 H 1.48496 * 109.47333 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46748 * 120.00402 * 9 7 5 12 12 H 1.48497 * 109.47048 * 239.99724 * 9 7 5 13 13 S 1.65603 * 120.00046 * 95.00257 * 4 3 2 14 14 O 1.42102 * 106.40172 * 341.69034 * 13 4 3 15 15 O 1.42101 * 106.40183 * 208.77112 * 13 4 3 16 16 C 1.76203 * 107.21655 * 95.23155 * 13 4 3 17 17 C 1.38290 * 120.11438 * 90.00366 * 16 13 4 18 18 C 1.37932 * 120.34762 * 179.56568 * 17 16 13 19 19 C 1.39286 * 120.24338 * 0.37295 * 18 17 16 20 20 C 1.38886 * 118.87381 * 0.12979 * 19 18 17 21 21 C 1.37747 * 120.78663 * 359.64061 * 20 19 18 22 22 C 1.51643 * 107.03971 * 179.45491 * 20 19 18 23 23 C 1.54706 * 101.91632 * 344.50285 * 22 20 19 24 24 C 1.52997 * 110.74678 * 266.98167 * 23 22 20 25 25 C 1.52996 * 110.90361 * 143.71119 * 23 22 20 26 26 O 1.36126 * 129.88788 * 180.56618 * 19 18 17 27 27 H 1.09004 * 109.46683 * 299.99725 * 1 2 3 28 28 H 1.08999 * 109.47433 * 59.99859 * 1 2 3 29 29 H 1.09004 * 109.47557 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46683 * 240.00275 * 2 1 3 31 31 H 1.08996 * 109.47205 * 120.00627 * 2 1 3 32 32 H 1.09004 * 109.47099 * 60.00530 * 3 2 1 33 33 H 1.08996 * 109.47575 * 300.00401 * 3 2 1 34 34 H 0.96999 * 119.99832 * 180.02562 * 8 7 5 35 35 H 1.07999 * 119.82675 * 359.84438 * 17 16 13 36 36 H 1.07998 * 119.87815 * 180.34435 * 18 17 16 37 37 H 1.07997 * 120.00844 * 180.27373 * 21 20 19 38 38 H 1.08999 * 110.93908 * 226.34632 * 22 20 19 39 39 H 1.09005 * 110.93941 * 102.65958 * 22 20 19 40 40 H 1.09004 * 109.47367 * 174.82442 * 24 23 22 41 41 H 1.08998 * 109.47555 * 294.82641 * 24 23 22 42 42 H 1.09005 * 109.46977 * 54.82892 * 24 23 22 43 43 H 1.09005 * 109.47449 * 305.08526 * 25 23 22 44 44 H 1.09004 * 109.47271 * 65.08251 * 25 23 22 45 45 H 1.09001 * 109.47151 * 185.08260 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3389 1.1805 6 1 5.1365 0.8195 1.2120 7 6 3.6683 1.9015 2.3372 8 7 2.8143 2.8997 2.2563 9 14 4.1781 1.2416 4.0089 10 1 5.1420 0.1266 3.8280 11 1 4.8188 2.3266 4.7948 12 1 2.9792 0.7478 4.7327 13 16 4.3324 1.5677 -1.4296 14 8 3.4118 1.2280 -2.4574 15 8 5.5679 0.8923 -1.2385 16 6 4.7260 3.2701 -1.6569 17 6 5.9129 3.7798 -1.1630 18 6 6.2299 5.1096 -1.3460 19 6 5.3528 5.9532 -2.0236 20 6 4.1592 5.4320 -2.5058 21 6 3.8466 4.1026 -2.3261 22 6 3.4156 6.5711 -3.1761 23 6 4.1705 7.8080 -2.6343 24 6 3.4893 8.3506 -1.3764 25 6 4.2739 8.8964 -3.7046 26 8 5.4691 7.2764 -2.3214 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 2.4500 3.2930 3.0646 35 1 6.5972 3.1321 -0.6353 36 1 7.1615 5.4984 -0.9620 37 1 2.9169 3.7096 -2.7101 38 1 2.3699 6.5876 -2.8692 39 1 3.5008 6.5069 -4.2609 40 1 4.0871 9.1618 -0.9607 41 1 2.4979 8.7243 -1.6325 42 1 3.3977 7.5524 -0.6398 43 1 4.7329 8.4813 -4.6019 44 1 3.2769 9.2662 -3.9443 45 1 4.8855 9.7173 -3.3301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271482202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:35 Heat of formation + Delta-G solvation = -87.557237 kcal Electronic energy + Delta-G solvation = -28589.998487 eV Core-core repulsion = 24699.752055 eV Total energy + Delta-G solvation = -3890.246432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.13619 -37.26093 -36.33197 -35.80952 -34.40417 -33.80846 -32.76531 -31.31496 -31.06576 -29.77054 -27.59281 -26.41702 -26.02290 -23.78949 -22.45465 -21.54468 -20.68148 -20.55860 -18.46893 -17.39705 -16.99753 -16.59569 -16.15190 -15.90657 -15.47746 -14.86166 -14.48259 -14.15698 -13.95348 -13.89488 -13.70074 -13.26856 -13.12791 -12.92535 -12.74350 -12.55034 -12.44577 -12.21037 -12.10017 -11.89200 -11.84071 -11.71825 -11.62908 -11.11474 -11.08385 -10.98644 -10.75141 -10.70561 -10.67054 -10.56362 -10.44726 -10.40177 -10.16113 -9.83383 -9.67610 -9.26541 -8.49543 -8.03381 -7.83442 -6.60898 -4.15379 1.43694 1.75074 1.86045 3.06549 3.15395 3.22730 3.27239 3.87651 4.01006 4.44808 4.48623 4.54625 4.70543 4.73698 4.96409 5.09153 5.16376 5.30933 5.37838 5.48471 5.54559 5.61126 5.66445 5.75380 5.78434 5.80110 5.81311 5.90338 5.97649 6.03581 6.05124 6.11383 6.24959 6.39355 6.49558 6.52789 6.61014 6.67659 6.75631 6.81859 6.88098 6.98408 7.18937 7.27117 7.49126 7.56206 8.25927 8.66660 9.14286 10.33419 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.004232 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.749100 B = 6614.130308 C = 7070.754618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.123 3.877 4 N -0.802 5.802 5 C -0.246 4.246 6 H 0.111 0.889 7 C 0.038 3.962 8 N -0.822 5.822 9 Si 0.919 3.081 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.276 1.276 13 S 2.540 3.460 14 O -1.006 7.006 15 O -0.986 6.986 16 C -0.673 4.673 17 C 0.014 3.986 18 C -0.163 4.163 19 C 0.133 3.867 20 C -0.202 4.202 21 C 0.020 3.980 22 C -0.097 4.097 23 C 0.100 3.900 24 C -0.163 4.163 25 C -0.139 4.139 26 O -0.300 6.300 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.274 0.726 35 H 0.142 0.858 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 8.453 -4.024 9.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.625 5.625 5 C -0.394 4.394 6 H 0.128 0.872 7 C -0.175 4.175 8 N -0.460 5.460 9 Si 0.744 3.256 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.201 1.201 13 S 2.641 3.359 14 O -0.995 6.995 15 O -0.976 6.976 16 C -0.752 4.752 17 C -0.005 4.005 18 C -0.182 4.182 19 C 0.088 3.912 20 C -0.203 4.203 21 C 0.001 3.999 22 C -0.134 4.134 23 C 0.062 3.938 24 C -0.220 4.220 25 C -0.196 4.196 26 O -0.215 6.215 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.123 8.153 -4.825 9.708 hybrid contribution 0.142 0.789 0.883 1.192 sum -1.981 8.942 -3.942 9.971 Atomic orbital electron populations 1.21671 0.96533 1.00659 1.01362 1.21873 0.94592 0.99020 1.02027 1.21412 0.79713 0.95559 1.03697 1.53741 1.11965 1.76830 1.19957 1.19849 1.07747 1.28323 0.83466 0.87182 1.25749 0.96986 0.93808 1.00978 1.69995 1.27628 1.18016 1.30366 0.85964 0.79145 0.79563 0.80883 1.18394 1.20405 1.20118 1.10728 0.73703 0.75843 0.75608 1.93329 1.63224 1.83817 1.59172 1.93352 1.45345 1.72638 1.86276 1.32194 1.02207 1.30758 1.09997 1.20611 0.94231 0.93489 0.92217 1.20320 1.00809 0.93369 1.03730 1.19617 0.94816 0.83534 0.93243 1.20729 0.98039 0.95747 1.05806 1.19923 0.97418 0.90473 0.92104 1.21822 1.00173 0.90853 1.00559 1.22735 0.81302 0.94232 0.95524 1.22194 1.00565 1.02163 0.97110 1.21821 1.02956 0.97434 0.97411 1.86824 1.30663 1.20469 1.83539 0.92940 0.93129 0.93448 0.92623 0.91542 0.87433 0.92898 0.91541 0.84070 0.85627 0.85258 0.89135 0.89483 0.91506 0.90769 0.91342 0.91539 0.90395 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.14 -2.62 6.23 -26.73 -0.17 -2.78 16 3 C 0.12 2.66 4.97 -4.05 -0.02 2.64 16 4 N -0.80 -18.91 2.85 -59.91 -0.17 -19.08 16 5 C -0.25 -5.93 9.17 -15.06 -0.14 -6.07 16 6 H 0.11 2.67 7.45 -52.48 -0.39 2.28 16 7 C 0.04 0.88 4.97 -17.43 -0.09 0.80 16 8 N -0.82 -19.42 11.28 55.49 0.63 -18.80 16 9 Si 0.92 18.09 29.62 -169.99 -5.03 13.06 16 10 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 11 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 12 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 13 S 2.54 60.47 5.61 -107.50 -0.60 59.87 16 14 O -1.01 -24.88 16.10 -57.17 -0.92 -25.80 16 15 O -0.99 -25.42 16.28 -57.17 -0.93 -26.36 16 16 C -0.67 -14.79 5.98 -39.52 -0.24 -15.02 16 17 C 0.01 0.28 9.50 -39.67 -0.38 -0.10 16 18 C -0.16 -3.06 10.06 -39.30 -0.40 -3.45 16 19 C 0.13 2.45 6.95 -38.95 -0.27 2.18 16 20 C -0.20 -3.66 6.26 -104.10 -0.65 -4.31 16 21 C 0.02 0.40 9.51 -39.72 -0.38 0.03 16 22 C -0.10 -1.33 6.18 -26.52 -0.16 -1.50 16 23 C 0.10 1.28 1.26 -89.73 -0.11 1.17 16 24 C -0.16 -1.93 8.85 37.16 0.33 -1.60 16 25 C -0.14 -1.32 8.96 37.16 0.33 -0.99 16 26 O -0.30 -4.93 10.52 -20.14 -0.21 -5.14 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.11 2.43 5.31 -51.93 -0.28 2.15 16 33 H 0.05 1.11 7.46 -51.93 -0.39 0.72 16 34 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 35 H 0.14 2.80 7.62 -52.49 -0.40 2.40 16 36 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 37 H 0.13 2.48 7.64 -52.49 -0.40 2.08 16 38 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 39 H 0.09 1.06 7.91 -51.93 -0.41 0.65 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 43 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -29.37 379.58 -10.38 -39.75 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.88 Total: 7.68 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -1.97 Total: -30.90 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.46 Total: -37.88 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -2.06 Total: -57.29 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: 60.47 SS G_CDS: -0.60 Total: 59.87 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.37 -10.38 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271482202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.811 kcal (2) G-P(sol) polarization free energy of solvation -29.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds