Wall clock time and date at job start Tue Mar 31 2020 23:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00463 * 2 1 4 4 S 1.81397 * 109.47333 * 115.00145 * 3 2 1 5 5 O 1.42098 * 108.57928 * 65.50928 * 4 3 2 6 6 O 1.42102 * 108.57685 * 294.48782 * 4 3 2 7 7 C 1.81393 * 101.92352 * 179.97438 * 4 3 2 8 8 C 1.53004 * 109.47190 * 179.97438 * 7 4 3 9 9 N 1.46901 * 109.46820 * 179.97438 * 8 7 4 10 10 C 1.46903 * 110.99623 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47148 * 34.99954 * 10 9 8 12 12 C 1.53002 * 109.47101 * 274.99787 * 10 9 8 13 13 C 1.50704 * 109.47151 * 155.00233 * 10 9 8 14 14 C 1.38299 * 119.93072 * 39.72221 * 13 10 9 15 15 C 1.38099 * 120.06809 * 179.72372 * 14 13 10 16 16 C 1.38876 * 119.92991 * 0.55702 * 15 14 13 17 17 O 1.35750 * 120.06959 * 179.74905 * 16 15 14 18 18 C 1.34827 * 117.00104 * 174.43819 * 17 16 15 19 19 H 1.07994 * 120.00121 * 5.05448 * 18 17 16 20 20 C 1.38654 * 119.99939 * 185.05211 * 18 17 16 21 21 N 1.31560 * 120.00052 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99963 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47358 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47641 * 119.99953 * 22 20 18 25 25 H 1.48500 * 109.47103 * 239.99990 * 22 20 18 26 26 C 1.38875 * 119.86408 * 359.71864 * 16 15 14 27 27 C 1.38105 * 119.92901 * 0.02562 * 26 16 15 28 28 H 1.07995 * 120.00433 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99495 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99495 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47294 * 354.99745 * 3 2 1 32 32 H 1.09005 * 109.47132 * 234.99801 * 3 2 1 33 33 H 1.09009 * 109.47166 * 59.99772 * 7 4 3 34 34 H 1.08998 * 109.47290 * 300.00041 * 7 4 3 35 35 H 1.09002 * 109.46710 * 60.00406 * 8 7 4 36 36 H 1.08995 * 109.47220 * 299.99974 * 8 7 4 37 37 H 1.00896 * 111.00470 * 56.05131 * 9 8 7 38 38 H 1.08997 * 109.47255 * 300.00101 * 12 10 9 39 39 H 1.09000 * 109.46874 * 60.00073 * 12 10 9 40 40 H 1.08998 * 109.46932 * 179.97438 * 12 10 9 41 41 H 1.08005 * 119.96654 * 0.02562 * 14 13 10 42 42 H 1.08000 * 120.03259 * 180.26925 * 15 14 13 43 43 H 0.97005 * 119.99499 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.04137 * 179.97438 * 26 16 15 45 45 H 1.07994 * 119.96237 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 16 2.9919 1.4672 1.5500 5 8 3.9905 0.4570 1.5875 6 8 2.0664 1.5681 2.6235 7 6 3.8045 3.0745 1.3336 8 6 4.6506 3.3886 2.5691 9 7 5.3091 4.6900 2.3936 10 6 6.1326 5.0252 3.5630 11 1 6.5756 4.1155 3.9683 12 6 5.2577 5.6857 4.6304 13 6 7.2266 5.9763 3.1511 14 6 6.9571 6.9884 2.2479 15 6 7.9560 7.8651 1.8728 16 6 9.2351 7.7225 2.3947 17 8 10.2204 8.5796 2.0241 18 6 11.4065 8.4578 2.6534 19 1 11.5652 7.6523 3.3551 20 6 12.4225 9.3665 2.3997 21 7 12.2294 10.3473 1.5444 22 14 14.0661 9.1972 3.2711 23 1 14.0280 8.0200 4.1754 24 1 15.1432 9.0147 2.2654 25 1 14.3335 10.4228 4.0658 26 6 9.5039 6.7018 3.2971 27 6 8.4993 5.8315 3.6724 28 1 -0.5400 -0.9352 0.0004 29 1 -0.5399 0.9354 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3587 2.1316 -0.0896 32 1 2.7558 1.3249 -0.8418 33 1 3.0487 3.8493 1.2046 34 1 4.4455 3.0419 0.4526 35 1 5.4063 2.6139 2.6985 36 1 4.0093 3.4214 3.4499 37 1 4.6329 5.4153 2.2073 38 1 4.8147 6.5954 4.2252 39 1 4.4665 4.9978 4.9283 40 1 5.8687 5.9340 5.4983 41 1 5.9632 7.0962 1.8392 42 1 7.7439 8.6579 1.1707 43 1 12.9404 10.9828 1.3667 44 1 10.4976 6.5880 3.7045 45 1 8.7077 5.0377 4.3744 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272851942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:43 Heat of formation + Delta-G solvation = -50.918358 kcal Electronic energy + Delta-G solvation = -25850.698991 eV Core-core repulsion = 21962.041339 eV Total energy + Delta-G solvation = -3888.657651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.22400 -37.77816 -37.33945 -36.42000 -35.92244 -35.48339 -32.88776 -32.10281 -30.19500 -29.01736 -28.29812 -27.82109 -25.39502 -23.45725 -22.58349 -21.70046 -20.68456 -20.10905 -19.23305 -17.93874 -17.33991 -17.08150 -16.77236 -16.45501 -15.97957 -15.43515 -15.13173 -14.90515 -14.48202 -14.28558 -14.17533 -13.90781 -13.59823 -13.43988 -13.12940 -13.03033 -12.77933 -12.70232 -12.51730 -12.43072 -12.34492 -12.23373 -12.04338 -11.77899 -11.70344 -11.67007 -11.44101 -11.18629 -11.10346 -10.70167 -10.59352 -10.43973 -10.39886 -9.88706 -9.30739 -8.81879 -8.54081 -8.13839 -7.13551 -6.43699 -4.02325 -0.53330 1.64143 2.25395 2.32828 2.34110 3.12681 3.14572 3.15787 3.20057 3.57085 3.94364 3.97877 4.08414 4.16279 4.30503 4.47072 4.60327 4.71560 4.90066 4.98333 5.01735 5.11722 5.23104 5.23443 5.27235 5.32152 5.38431 5.43931 5.67287 5.75878 5.83048 5.91902 5.94750 5.97145 6.12940 6.24346 6.42742 6.72418 6.78041 6.96457 7.09456 7.24264 7.31039 7.42877 7.47181 7.85390 8.01756 9.02374 9.73293 10.74545 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027881 B = 0.001744 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.042529 B =16055.204584 C =16185.571605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.166 4.166 3 C -0.580 4.580 4 S 2.419 3.581 5 O -0.933 6.933 6 O -0.935 6.935 7 C -0.611 4.611 8 C 0.069 3.931 9 N -0.671 5.671 10 C 0.138 3.862 11 H 0.079 0.921 12 C -0.178 4.178 13 C -0.168 4.168 14 C -0.054 4.054 15 C -0.194 4.194 16 C 0.153 3.847 17 O -0.180 6.180 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.233 4.233 27 C -0.067 4.067 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.144 0.856 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.342 0.658 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.751 -16.402 -1.349 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.185 4.185 3 C -0.708 4.708 4 S 2.601 3.399 5 O -0.930 6.930 6 O -0.932 6.932 7 C -0.740 4.740 8 C -0.062 4.062 9 N -0.302 5.302 10 C 0.029 3.971 11 H 0.097 0.903 12 C -0.237 4.237 13 C -0.170 4.170 14 C -0.072 4.072 15 C -0.214 4.214 16 C 0.100 3.900 17 O -0.083 6.083 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.252 4.252 27 C -0.086 4.086 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.160 0.840 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.005 -16.855 -1.253 26.961 hybrid contribution 0.134 0.793 0.225 0.836 sum -20.871 -16.061 -1.028 26.356 Atomic orbital electron populations 1.24107 0.95597 1.03018 0.96522 1.22247 0.96318 0.95781 1.04192 1.29474 1.14055 1.04484 1.22767 1.08180 0.76444 0.77748 0.77494 1.93601 1.58547 1.54755 1.86068 1.93590 1.63349 1.86557 1.49722 1.30423 1.12357 1.22159 1.09103 1.21608 0.96706 0.95060 0.92778 1.60643 1.26599 1.02894 1.40065 1.20255 0.92077 0.96938 0.87870 0.90272 1.22518 0.99929 1.00868 1.00424 1.19021 0.94016 0.99808 1.04129 1.20291 0.97432 0.93573 0.95932 1.20198 0.91247 1.03360 1.06580 1.19393 0.89085 0.89592 0.91936 1.83977 1.19192 1.49486 1.55690 1.21369 0.87331 1.13817 1.24190 0.89049 1.25283 0.99397 0.94885 0.97004 1.70053 1.33541 1.14113 1.32169 0.85651 0.80357 0.78588 0.78850 1.19122 1.20171 1.20183 1.21115 1.00269 0.99158 1.04646 1.20548 0.92140 0.97686 0.98177 0.87071 0.87811 0.85346 0.84713 0.83893 0.85037 0.83778 0.89298 0.93606 0.83954 0.92204 0.93205 0.91520 0.87411 0.86725 0.92131 0.85629 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 14.32 29.02 0.42 -0.35 16 2 C -0.17 -0.97 9.52 -36.03 -0.34 -1.32 16 3 C -0.58 -2.54 6.25 36.00 0.22 -2.32 16 4 S 2.42 17.72 4.70 -107.50 -0.51 17.21 16 5 O -0.93 -10.38 18.10 -57.83 -1.05 -11.43 16 6 O -0.94 -10.02 18.10 -57.83 -1.05 -11.07 16 7 C -0.61 -3.74 6.07 37.16 0.23 -3.52 16 8 C 0.07 0.64 5.49 -3.82 -0.02 0.62 16 9 N -0.67 -7.44 5.69 -107.95 -0.61 -8.05 16 10 C 0.14 1.76 2.79 -68.86 -0.19 1.56 16 11 H 0.08 0.99 7.66 -51.93 -0.40 0.59 16 12 C -0.18 -1.99 9.14 37.16 0.34 -1.65 16 13 C -0.17 -2.78 4.96 -104.58 -0.52 -3.30 16 14 C -0.05 -0.93 9.32 -39.61 -0.37 -1.30 16 15 C -0.19 -4.08 9.99 -39.40 -0.39 -4.48 16 16 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 17 O -0.18 -5.16 9.76 0.05 0.00 -5.16 16 18 C -0.39 -10.96 9.49 30.89 0.29 -10.67 16 19 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 21 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 22 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 26 C -0.23 -5.05 9.17 -39.39 -0.36 -5.41 16 27 C -0.07 -1.21 9.66 -39.61 -0.38 -1.60 16 28 H 0.11 0.39 8.06 -52.49 -0.42 -0.03 16 29 H 0.10 0.40 7.84 -52.48 -0.41 -0.01 16 30 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 31 H 0.13 0.29 7.79 -51.92 -0.40 -0.12 16 32 H 0.14 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.14 0.73 8.14 -51.92 -0.42 0.30 16 35 H 0.09 0.87 8.05 -51.93 -0.42 0.46 16 36 H 0.05 0.40 7.44 -51.93 -0.39 0.01 16 37 H 0.34 3.27 7.81 -39.29 -0.31 2.96 16 38 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 1.55 7.23 -52.48 -0.38 1.17 16 42 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 45 H 0.10 1.63 8.03 -52.49 -0.42 1.20 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -36.79 392.53 -9.60 -46.39 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.60 Total: 4.53 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -1.44 Total: -29.30 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.14 Total: -32.68 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -2.09 Total: -27.65 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 17.72 SS G_CDS: -0.51 Total: 17.21 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.79 -9.60 -46.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272851942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.525 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds