Wall clock time and date at job start Tue Mar 31 2020 23:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50695 * 119.99894 * 2 1 4 4 S 1.81396 * 109.47360 * 114.99793 * 3 2 1 5 5 O 1.42096 * 108.58033 * 65.51198 * 4 3 2 6 6 O 1.42102 * 108.57609 * 294.48384 * 4 3 2 7 7 C 1.81401 * 101.91951 * 179.97438 * 4 3 2 8 8 C 1.53004 * 109.46823 * 180.02562 * 7 4 3 9 9 N 1.46904 * 109.47204 * 180.02562 * 8 7 4 10 10 C 1.46892 * 111.00131 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47114 * 324.99774 * 10 9 8 12 12 C 1.52997 * 109.47295 * 84.99918 * 10 9 8 13 13 C 1.50696 * 109.47167 * 204.99735 * 10 9 8 14 14 C 1.38300 * 119.93262 * 319.72911 * 13 10 9 15 15 C 1.38104 * 120.07247 * 179.72590 * 14 13 10 16 16 C 1.38880 * 119.92810 * 0.54158 * 15 14 13 17 17 O 1.35747 * 120.07174 * 179.75066 * 16 15 14 18 18 C 1.34825 * 117.00597 * 174.44425 * 17 16 15 19 19 H 1.08005 * 119.99735 * 5.05211 * 18 17 16 20 20 C 1.38651 * 120.00550 * 185.05478 * 18 17 16 21 21 N 1.31557 * 119.99702 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46906 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46956 * 120.00407 * 22 20 18 25 25 H 1.48504 * 109.47096 * 240.00135 * 22 20 18 26 26 C 1.38882 * 119.86199 * 359.72799 * 16 15 14 27 27 C 1.38098 * 119.93192 * 0.02562 * 26 16 15 28 28 H 1.08004 * 119.99349 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00156 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99783 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47092 * 354.99178 * 3 2 1 32 32 H 1.09002 * 109.47043 * 234.99944 * 3 2 1 33 33 H 1.09002 * 109.47446 * 60.00356 * 7 4 3 34 34 H 1.08994 * 109.47093 * 299.99462 * 7 4 3 35 35 H 1.08995 * 109.47560 * 59.99733 * 8 7 4 36 36 H 1.09004 * 109.46743 * 299.99576 * 8 7 4 37 37 H 1.00903 * 110.99438 * 303.95610 * 9 8 7 38 38 H 1.08994 * 109.47650 * 59.99661 * 12 10 9 39 39 H 1.09004 * 109.47560 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.47148 * 299.99944 * 12 10 9 41 41 H 1.08005 * 119.96345 * 359.97438 * 14 13 10 42 42 H 1.08000 * 120.03674 * 180.27353 * 15 14 13 43 43 H 0.97001 * 120.00315 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.03671 * 179.97438 * 26 16 15 45 45 H 1.08000 * 119.97139 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 16 2.9918 1.4674 1.5500 5 8 3.9905 0.4574 1.5876 6 8 2.0662 1.5683 2.6235 7 6 3.8042 3.0748 1.3335 8 6 4.6512 3.3885 2.5685 9 7 5.3087 4.6905 2.3936 10 6 6.1320 5.0259 3.5630 11 1 5.6505 4.6506 4.4660 12 6 7.5125 4.3828 3.4161 13 6 6.2826 6.5222 3.6588 14 6 6.4779 7.2710 2.5125 15 6 6.6106 8.6431 2.5965 16 6 6.5590 9.2697 3.8348 17 8 6.6942 10.6177 3.9211 18 6 6.5198 11.1738 5.1369 19 1 6.3648 10.5450 6.0011 20 6 6.5395 12.5531 5.2777 21 7 6.7278 13.3191 4.2249 22 14 6.2971 13.3235 6.9620 23 1 6.1058 12.2529 7.9731 24 1 7.4939 14.1288 7.3148 25 1 5.0996 14.2013 6.9372 26 6 6.3684 8.5145 4.9846 27 6 6.2313 7.1434 4.8935 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3586 2.1316 -0.0897 32 1 2.7557 1.3250 -0.8418 33 1 3.0484 3.8496 1.2045 34 1 4.4452 3.0422 0.4526 35 1 5.4070 2.6138 2.6972 36 1 4.0104 3.4210 3.4498 37 1 5.8580 4.7073 1.5473 38 1 7.9940 4.7580 2.5132 39 1 8.1233 4.6313 4.2841 40 1 7.4036 3.3005 3.3468 41 1 6.5226 6.7826 1.5503 42 1 6.7586 9.2277 1.7005 43 1 6.7411 14.2840 4.3232 44 1 6.3283 8.9988 5.9490 45 1 6.0826 6.5555 5.7872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272851944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:47 Heat of formation + Delta-G solvation = -50.962892 kcal Electronic energy + Delta-G solvation = -25865.359683 eV Core-core repulsion = 21976.700101 eV Total energy + Delta-G solvation = -3888.659583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.22376 -37.77771 -37.33620 -36.41619 -35.92148 -35.47235 -32.88715 -32.10279 -30.19460 -29.01607 -28.29313 -27.81835 -25.39489 -23.45495 -22.58373 -21.70011 -20.67767 -20.10801 -19.23037 -17.93879 -17.32321 -17.04491 -16.83878 -16.47766 -15.82800 -15.56389 -15.09865 -14.89829 -14.48360 -14.34487 -14.10678 -13.90421 -13.58370 -13.42913 -13.14590 -13.04301 -12.76978 -12.70157 -12.51100 -12.42332 -12.34080 -12.24928 -12.03361 -11.78551 -11.69166 -11.66723 -11.43821 -11.17912 -11.10548 -10.69198 -10.59497 -10.44552 -10.40229 -9.87727 -9.30609 -8.81919 -8.53652 -8.13909 -7.13523 -6.43630 -4.02270 -0.52878 1.65161 2.25327 2.33171 2.34093 3.12722 3.14659 3.16181 3.20130 3.57561 3.95074 3.97944 4.09040 4.16983 4.30312 4.47883 4.60411 4.71207 4.91310 4.98891 5.02503 5.09930 5.22786 5.24458 5.26851 5.34188 5.38271 5.44172 5.67150 5.75697 5.82939 5.92968 5.94590 5.98392 6.12509 6.24274 6.42717 6.72352 6.78234 6.96494 7.09428 7.24556 7.30973 7.42811 7.47155 7.85333 8.01800 9.02421 9.73327 10.74635 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022532 B = 0.001800 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.363769 B =15549.235369 C =15915.538963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.168 4.168 3 C -0.580 4.580 4 S 2.419 3.581 5 O -0.937 6.937 6 O -0.931 6.931 7 C -0.611 4.611 8 C 0.069 3.931 9 N -0.671 5.671 10 C 0.138 3.862 11 H 0.079 0.921 12 C -0.179 4.179 13 C -0.168 4.168 14 C -0.054 4.054 15 C -0.194 4.194 16 C 0.153 3.847 17 O -0.180 6.180 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.067 4.067 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.132 0.868 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.342 0.658 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 -24.335 -8.615 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.187 4.187 3 C -0.708 4.708 4 S 2.601 3.399 5 O -0.934 6.934 6 O -0.928 6.928 7 C -0.740 4.740 8 C -0.062 4.062 9 N -0.302 5.302 10 C 0.029 3.971 11 H 0.097 0.903 12 C -0.237 4.237 13 C -0.169 4.169 14 C -0.072 4.072 15 C -0.214 4.214 16 C 0.100 3.900 17 O -0.083 6.083 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.252 4.252 27 C -0.086 4.086 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.150 0.850 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.160 0.840 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.934 -24.117 -7.892 26.586 hybrid contribution 0.564 0.469 -0.105 0.741 sum -7.371 -23.648 -7.997 26.029 Atomic orbital electron populations 1.24130 0.95611 1.03088 0.96241 1.22234 0.96329 0.95702 1.04447 1.29471 1.14090 1.04595 1.22594 1.08183 0.76510 0.77624 0.77559 1.93585 1.58743 1.54911 1.86191 1.93605 1.63178 1.86435 1.49562 1.30422 1.13133 1.22598 1.07887 1.21609 0.96938 0.92434 0.95170 1.60639 1.36142 1.27931 1.05484 1.20252 0.90998 0.93024 0.92865 0.90267 1.22520 0.98480 0.99617 1.03128 1.19018 1.11273 0.93091 0.93565 1.20293 0.97652 0.92442 0.96863 1.20197 1.11391 0.94180 0.95598 1.19393 0.92275 0.85075 0.93271 1.83974 1.76602 1.14526 1.33245 1.21368 1.51114 0.90495 0.83711 0.89051 1.25283 0.96688 0.95149 0.99460 1.70048 1.45792 1.04971 1.29077 0.85652 0.78270 0.79281 0.80247 1.19115 1.20189 1.20163 1.21114 1.11277 0.93842 0.98947 1.20551 0.98123 0.93919 0.95972 0.87071 0.87709 0.85419 0.84543 0.84083 0.83811 0.85004 0.93605 0.89307 0.83954 0.92208 0.91530 0.93197 0.87426 0.86723 0.92126 0.85629 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 14.32 29.01 0.42 -0.37 16 2 C -0.17 -0.99 9.52 -36.03 -0.34 -1.33 16 3 C -0.58 -2.57 6.25 36.00 0.22 -2.34 16 4 S 2.42 17.84 4.70 -107.50 -0.51 17.34 16 5 O -0.94 -9.97 18.10 -57.83 -1.05 -11.01 16 6 O -0.93 -10.53 18.10 -57.83 -1.05 -11.58 16 7 C -0.61 -3.78 6.07 37.16 0.23 -3.55 16 8 C 0.07 0.65 5.49 -3.82 -0.02 0.63 16 9 N -0.67 -7.47 5.71 -107.95 -0.62 -8.08 16 10 C 0.14 1.76 2.79 -68.87 -0.19 1.56 16 11 H 0.08 0.99 7.66 -51.92 -0.40 0.59 16 12 C -0.18 -1.98 9.14 37.16 0.34 -1.64 16 13 C -0.17 -2.77 4.96 -104.57 -0.52 -3.29 16 14 C -0.05 -0.93 9.31 -39.61 -0.37 -1.30 16 15 C -0.19 -4.08 9.99 -39.39 -0.39 -4.47 16 16 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 17 O -0.18 -5.16 9.76 0.07 0.00 -5.16 16 18 C -0.39 -10.96 9.49 30.89 0.29 -10.67 16 19 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 22 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 C -0.23 -5.05 9.17 -39.39 -0.36 -5.41 16 27 C -0.07 -1.22 9.66 -39.61 -0.38 -1.60 16 28 H 0.11 0.41 8.06 -52.48 -0.42 -0.01 16 29 H 0.10 0.45 7.84 -52.49 -0.41 0.04 16 30 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 31 H 0.14 0.35 7.79 -51.92 -0.40 -0.05 16 32 H 0.14 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.14 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.40 7.44 -51.93 -0.39 0.01 16 36 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 37 H 0.34 3.28 7.82 -39.29 -0.31 2.97 16 38 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 41 H 0.11 1.55 7.25 -52.48 -0.38 1.17 16 42 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 45 H 0.10 1.63 8.03 -52.49 -0.42 1.20 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -36.82 392.56 -9.60 -46.42 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.60 Total: 4.60 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -1.44 Total: -29.39 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.14 Total: -32.73 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -2.09 Total: -27.75 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 17.84 SS G_CDS: -0.51 Total: 17.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.82 -9.60 -46.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272851944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.546 kcal (2) G-P(sol) polarization free energy of solvation -36.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds