Wall clock time and date at job start Tue Mar 31 2020 23:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50695 * 119.99894 * 2 1 4 4 S 1.81396 * 109.47360 * 114.99793 * 3 2 1 5 5 O 1.42096 * 108.58033 * 65.51198 * 4 3 2 6 6 O 1.42102 * 108.57609 * 294.48384 * 4 3 2 7 7 C 1.81401 * 101.91951 * 179.97438 * 4 3 2 8 8 C 1.53004 * 109.46823 * 180.02562 * 7 4 3 9 9 N 1.46904 * 109.47204 * 180.02562 * 8 7 4 10 10 C 1.46892 * 111.00131 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47114 * 324.99774 * 10 9 8 12 12 C 1.52997 * 109.47295 * 84.99918 * 10 9 8 13 13 C 1.50696 * 109.47167 * 204.99735 * 10 9 8 14 14 C 1.38300 * 119.93262 * 319.72911 * 13 10 9 15 15 C 1.38104 * 120.07247 * 179.72590 * 14 13 10 16 16 C 1.38880 * 119.92810 * 0.54158 * 15 14 13 17 17 O 1.35747 * 120.07174 * 179.75066 * 16 15 14 18 18 C 1.34825 * 117.00597 * 174.44425 * 17 16 15 19 19 H 1.08005 * 119.99735 * 5.05211 * 18 17 16 20 20 C 1.38651 * 120.00550 * 185.05478 * 18 17 16 21 21 N 1.31557 * 119.99702 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46906 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46956 * 120.00407 * 22 20 18 25 25 H 1.48504 * 109.47096 * 240.00135 * 22 20 18 26 26 C 1.38882 * 119.86199 * 359.72799 * 16 15 14 27 27 C 1.38098 * 119.93192 * 0.02562 * 26 16 15 28 28 H 1.08004 * 119.99349 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00156 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99783 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47092 * 354.99178 * 3 2 1 32 32 H 1.09002 * 109.47043 * 234.99944 * 3 2 1 33 33 H 1.09002 * 109.47446 * 60.00356 * 7 4 3 34 34 H 1.08994 * 109.47093 * 299.99462 * 7 4 3 35 35 H 1.08995 * 109.47560 * 59.99733 * 8 7 4 36 36 H 1.09004 * 109.46743 * 299.99576 * 8 7 4 37 37 H 1.00903 * 110.99438 * 303.95610 * 9 8 7 38 38 H 1.08994 * 109.47650 * 59.99661 * 12 10 9 39 39 H 1.09004 * 109.47560 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.47148 * 299.99944 * 12 10 9 41 41 H 1.08005 * 119.96345 * 359.97438 * 14 13 10 42 42 H 1.08000 * 120.03674 * 180.27353 * 15 14 13 43 43 H 0.97001 * 120.00315 * 179.97438 * 21 20 18 44 44 H 1.07994 * 120.03671 * 179.97438 * 26 16 15 45 45 H 1.08000 * 119.97139 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 16 2.9918 1.4674 1.5500 5 8 3.9905 0.4574 1.5876 6 8 2.0662 1.5683 2.6235 7 6 3.8042 3.0748 1.3335 8 6 4.6512 3.3885 2.5685 9 7 5.3087 4.6905 2.3936 10 6 6.1320 5.0259 3.5630 11 1 5.6505 4.6506 4.4660 12 6 7.5125 4.3828 3.4161 13 6 6.2826 6.5222 3.6588 14 6 6.4779 7.2710 2.5125 15 6 6.6106 8.6431 2.5965 16 6 6.5590 9.2697 3.8348 17 8 6.6942 10.6177 3.9211 18 6 6.5198 11.1738 5.1369 19 1 6.3648 10.5450 6.0011 20 6 6.5395 12.5531 5.2777 21 7 6.7278 13.3191 4.2249 22 14 6.2971 13.3235 6.9620 23 1 6.1058 12.2529 7.9731 24 1 7.4939 14.1288 7.3148 25 1 5.0996 14.2013 6.9372 26 6 6.3684 8.5145 4.9846 27 6 6.2313 7.1434 4.8935 28 1 -0.5399 -0.9354 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3586 2.1316 -0.0897 32 1 2.7557 1.3250 -0.8418 33 1 3.0484 3.8496 1.2045 34 1 4.4452 3.0422 0.4526 35 1 5.4070 2.6138 2.6972 36 1 4.0104 3.4210 3.4498 37 1 5.8580 4.7073 1.5473 38 1 7.9940 4.7580 2.5132 39 1 8.1233 4.6313 4.2841 40 1 7.4036 3.3005 3.3468 41 1 6.5226 6.7826 1.5503 42 1 6.7586 9.2277 1.7005 43 1 6.7411 14.2840 4.3232 44 1 6.3283 8.9988 5.9490 45 1 6.0826 6.5555 5.7872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272851944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:46 Heat of formation + Delta-G solvation = -78.470249 kcal Electronic energy + Delta-G solvation = -25866.552492 eV Core-core repulsion = 21976.700101 eV Total energy + Delta-G solvation = -3889.852391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.83580 -39.14962 -38.00688 -37.30717 -37.03050 -35.85049 -34.37231 -33.54539 -31.78132 -30.04737 -29.09093 -28.64561 -27.34746 -24.38833 -23.92705 -23.05702 -21.55859 -21.03998 -19.83106 -19.72438 -18.82287 -17.89371 -17.38374 -17.31298 -16.74761 -16.42559 -16.22186 -16.11810 -15.74711 -15.54993 -15.41208 -15.17065 -14.72619 -14.53576 -14.36066 -14.11822 -13.93867 -13.57464 -13.47913 -13.43026 -13.27470 -13.11264 -13.03558 -12.93804 -12.60065 -12.48930 -12.39530 -12.27179 -12.18739 -12.12270 -12.08151 -11.86190 -11.49603 -11.13598 -10.77697 -10.28035 -9.72863 -9.41144 -8.84139 -8.46010 -6.13635 -1.05421 0.64911 0.74950 1.26695 1.35116 1.43363 1.53264 1.85823 2.18351 2.61607 2.84108 3.09640 3.14980 3.33559 3.55807 3.63095 3.66940 3.82879 3.95574 4.04408 4.11354 4.21457 4.35740 4.37241 4.39287 4.42868 4.63547 4.64374 4.65114 4.72980 4.83183 4.90216 4.91907 4.96822 5.13103 5.18372 5.27976 5.32384 5.57364 5.59831 5.60828 5.74956 5.78413 6.05136 6.08205 6.27817 6.47758 6.99183 7.81446 8.77599 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022532 B = 0.001800 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.363769 B =15549.235369 C =15915.538963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.195 4.195 3 C -0.561 4.561 4 S 2.418 3.582 5 O -0.978 6.978 6 O -0.981 6.981 7 C -0.600 4.600 8 C 0.058 3.942 9 N -0.678 5.678 10 C 0.138 3.862 11 H 0.086 0.914 12 C -0.175 4.175 13 C -0.141 4.141 14 C -0.045 4.045 15 C -0.205 4.205 16 C 0.109 3.891 17 O -0.235 6.235 18 C -0.412 4.412 19 H 0.100 0.900 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.253 1.253 24 H -0.268 1.268 25 H -0.269 1.269 26 C -0.243 4.243 27 C -0.070 4.070 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.353 0.647 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.272 0.728 44 H 0.115 0.885 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.230 -26.930 -9.400 29.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.214 4.214 3 C -0.692 4.692 4 S 2.607 3.393 5 O -0.976 6.976 6 O -0.978 6.978 7 C -0.731 4.731 8 C -0.072 4.072 9 N -0.310 5.310 10 C 0.029 3.971 11 H 0.104 0.896 12 C -0.234 4.234 13 C -0.143 4.143 14 C -0.063 4.063 15 C -0.224 4.224 16 C 0.059 3.941 17 O -0.142 6.142 18 C -0.488 4.488 19 H 0.117 0.883 20 C -0.221 4.221 21 N -0.560 5.560 22 Si 0.838 3.162 23 H -0.176 1.176 24 H -0.193 1.193 25 H -0.194 1.194 26 C -0.262 4.262 27 C -0.089 4.089 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.145 0.855 31 H 0.179 0.821 32 H 0.190 0.810 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.174 0.826 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.165 0.835 42 H 0.130 0.870 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.625 -26.791 -8.656 29.446 hybrid contribution 0.712 0.885 -0.046 1.137 sum -7.913 -25.906 -8.702 28.451 Atomic orbital electron populations 1.24416 0.95694 1.04176 0.94990 1.22495 0.96928 0.96535 1.05455 1.29312 1.14505 1.04845 1.20493 1.07891 0.75815 0.77477 0.78146 1.93530 1.60055 1.56720 1.87248 1.93542 1.64248 1.87115 1.52919 1.30299 1.13524 1.21444 1.07790 1.21700 0.97356 0.91677 0.96449 1.60511 1.35994 1.29273 1.05239 1.20224 0.92693 0.89932 0.94286 0.89617 1.22466 0.96945 1.00784 1.03167 1.19587 1.06628 0.95559 0.92490 1.20691 0.95762 0.90796 0.99053 1.20477 1.11497 0.95919 0.94511 1.19955 0.94530 0.84210 0.95385 1.83933 1.79726 1.16827 1.33696 1.21835 1.51416 0.91308 0.84222 0.88288 1.26567 0.96161 0.95336 1.04063 1.70189 1.48570 1.05348 1.31881 0.84536 0.78501 0.78386 0.74821 1.17607 1.19293 1.19359 1.21199 1.11750 0.95425 0.97812 1.20919 0.97174 0.92578 0.98185 0.86098 0.86768 0.85480 0.82130 0.80984 0.82289 0.81681 0.92884 0.90381 0.82650 0.91712 0.92046 0.91226 0.83536 0.87039 0.91903 0.86710 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 14.32 67.77 0.97 -0.31 16 2 C -0.19 -1.89 9.52 25.64 0.24 -1.64 16 3 C -0.56 -3.09 6.25 71.23 0.44 -2.64 16 4 S 2.42 30.96 4.70 -56.49 -0.27 30.70 16 5 O -0.98 -19.63 18.10 -127.37 -2.30 -21.94 16 6 O -0.98 -21.58 18.10 -127.37 -2.31 -23.89 16 7 C -0.60 -5.14 6.07 71.98 0.44 -4.70 16 8 C 0.06 0.90 5.49 86.30 0.47 1.37 16 9 N -0.68 -12.25 5.71 -495.45 -2.83 -15.07 16 10 C 0.14 3.00 2.79 44.17 0.12 3.12 16 11 H 0.09 1.82 7.66 -2.38 -0.02 1.80 16 12 C -0.17 -3.18 9.14 71.98 0.66 -2.52 16 13 C -0.14 -4.27 4.96 -19.83 -0.10 -4.36 16 14 C -0.04 -1.45 9.31 22.25 0.21 -1.24 16 15 C -0.20 -8.67 9.99 22.39 0.22 -8.44 16 16 C 0.11 5.49 6.65 22.58 0.15 5.64 16 17 O -0.23 -14.34 9.76 -22.65 -0.22 -14.56 16 18 C -0.41 -24.34 9.49 67.92 0.64 -23.69 16 19 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 20 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 21 N -0.92 -57.07 13.67 21.61 0.30 -56.78 16 22 Si 1.02 43.46 29.55 68.60 2.03 45.49 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 C -0.24 -10.72 9.17 22.39 0.21 -10.52 16 27 C -0.07 -2.43 9.66 22.25 0.21 -2.21 16 28 H 0.12 0.69 8.06 -2.91 -0.02 0.67 16 29 H 0.11 0.69 7.84 -2.91 -0.02 0.67 16 30 H 0.13 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.16 0.15 7.79 -2.39 -0.02 0.13 16 32 H 0.17 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.17 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.05 0.75 7.44 -2.39 -0.02 0.73 16 36 H 0.08 1.38 8.05 -2.39 -0.02 1.36 16 37 H 0.35 4.99 7.82 -89.69 -0.70 4.28 16 38 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 39 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.07 1.04 7.45 -2.39 -0.02 1.02 16 41 H 0.15 3.58 7.25 -2.91 -0.02 3.56 16 42 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.12 5.21 5.64 -2.91 -0.02 5.20 16 45 H 0.14 3.84 8.03 -2.91 -0.02 3.81 16 Total: -1.00 -86.58 392.56 0.05 -86.53 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.29 Total: 22.59 kcal Atomic # 6 Polarization: -58.43 SS G_CDS: 5.36 Total: -53.07 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -2.53 Total: -71.85 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: -4.83 Total: -60.38 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 30.96 SS G_CDS: -0.27 Total: 30.70 kcal Total: -86.58 0.05 -86.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272851944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.055 kcal (2) G-P(sol) polarization free energy of solvation -86.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds