Wall clock time and date at job start Tue Mar 31 2020 23:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 S 1.81399 * 109.47004 * 119.99975 * 2 1 3 5 5 O 1.42106 * 110.54510 * 296.62679 * 4 2 1 6 6 O 1.42102 * 110.54329 * 73.37000 * 4 2 1 7 7 C 1.76193 * 104.45296 * 184.99829 * 4 2 1 8 8 C 1.38230 * 120.00237 * 269.73184 * 7 4 2 9 9 C 1.38236 * 120.00201 * 179.76168 * 8 7 4 10 10 C 1.38235 * 119.99687 * 0.48572 * 9 8 7 11 11 C 1.50707 * 119.99791 * 179.76687 * 10 9 8 12 12 C 1.50702 * 109.47058 * 270.01713 * 11 10 9 13 13 O 1.21280 * 119.99864 * 0.02562 * 12 11 10 14 14 N 1.34768 * 119.99619 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99718 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47203 * 180.02562 * 15 14 12 17 17 C 1.50702 * 109.47074 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99801 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99684 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00169 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99538 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47141 * 89.99995 * 21 19 17 23 23 H 1.48506 * 109.46498 * 209.99867 * 21 19 17 24 24 H 1.48497 * 109.47293 * 329.99406 * 21 19 17 25 25 C 1.38234 * 120.00181 * 359.78859 * 10 9 8 26 26 C 1.38231 * 119.99822 * 359.95666 * 25 10 9 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.08001 * 119.99729 * 359.97438 * 8 7 4 35 35 H 1.07999 * 120.00064 * 180.24510 * 9 8 7 36 36 H 1.09000 * 109.47103 * 30.02319 * 11 10 9 37 37 H 1.09005 * 109.46908 * 150.02000 * 11 10 9 38 38 H 0.96994 * 120.00708 * 0.02562 * 14 12 11 39 39 H 1.09000 * 109.47562 * 300.00448 * 15 14 12 40 40 H 1.09005 * 109.47024 * 60.00482 * 15 14 12 41 41 H 1.08994 * 109.47104 * 300.00078 * 16 15 14 42 42 H 1.08992 * 109.47049 * 60.00420 * 16 15 14 43 43 H 0.97005 * 119.99853 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.00321 * 179.97438 * 25 10 9 45 45 H 1.08002 * 119.99961 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.7386 -0.1594 2.6553 6 8 1.9419 -2.2578 1.3607 7 6 3.8838 -0.6504 1.4239 8 6 4.6687 -1.5884 0.7798 9 6 6.0405 -1.4252 0.7307 10 6 6.6283 -0.3292 1.3343 11 6 8.1243 -0.1541 1.2852 12 6 8.7486 -0.8299 2.4788 13 8 8.0478 -1.3982 3.2892 14 7 10.0857 -0.8036 2.6450 15 6 10.6927 -1.4610 3.8051 16 6 12.2115 -1.2831 3.7553 17 6 12.8359 -1.9599 4.9483 18 1 12.2118 -2.4660 5.6699 19 6 14.2038 -1.9322 5.1189 20 7 14.9637 -1.3155 4.2403 21 14 14.9778 -2.7718 6.5972 22 1 15.2985 -4.1806 6.2547 23 1 16.2241 -2.0582 6.9753 24 1 14.0262 -2.7437 7.7369 25 6 5.8438 0.6058 1.9832 26 6 4.4716 0.4454 2.0278 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 4.2099 -2.4469 0.3121 35 1 6.6535 -2.1560 0.2241 36 1 8.5126 -0.6012 0.3701 37 1 8.3664 0.9086 1.3015 38 1 10.6463 -0.3494 1.9967 39 1 10.3046 -1.0141 4.7203 40 1 10.4503 -2.5236 3.7885 41 1 12.5999 -1.7298 2.8401 42 1 12.4536 -0.2205 3.7721 43 1 15.9261 -1.2957 4.3606 44 1 6.3030 1.4619 2.4552 45 1 3.8586 1.1761 2.5345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273032127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:40 Heat of formation + Delta-G solvation = -101.807006 kcal Electronic energy + Delta-G solvation = -26131.575973 eV Core-core repulsion = 22240.711624 eV Total energy + Delta-G solvation = -3890.864349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.06942 -38.76139 -37.41724 -36.21531 -35.55045 -34.95679 -33.29809 -32.85393 -31.28402 -29.98403 -28.29094 -27.58966 -24.74731 -23.28061 -23.01826 -22.35392 -21.00680 -20.12580 -19.20721 -18.11367 -17.10605 -16.91719 -16.38683 -16.33318 -15.88981 -15.70781 -15.02858 -14.92210 -14.67022 -14.52853 -14.42601 -13.86887 -13.79416 -13.68714 -13.48513 -13.33071 -12.90945 -12.81105 -12.41086 -12.36154 -12.25139 -12.22954 -12.11230 -12.00819 -11.96424 -11.37618 -11.25130 -11.08367 -11.05985 -10.67333 -10.62313 -10.38046 -9.91592 -9.62929 -9.37894 -9.22355 -9.14653 -8.60693 -8.40916 -6.13047 -4.15939 -0.28513 0.58582 1.11690 2.55671 2.88596 3.09956 3.27454 3.33655 3.37929 3.56775 3.68763 3.76860 4.00434 4.18244 4.38089 4.40131 4.49771 4.53063 4.67346 4.90489 4.95057 5.03174 5.06057 5.06803 5.11504 5.20976 5.24205 5.26405 5.31460 5.42464 5.51015 5.53305 5.73395 5.83979 5.91487 6.24319 6.27856 6.29416 6.61709 6.68192 6.83102 7.46416 7.56237 7.84757 7.91635 8.23243 8.55374 8.89950 9.49215 10.98453 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.001768 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.398131 B =15832.588222 C =16146.829699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.570 4.570 3 C -0.145 4.145 4 S 2.494 3.506 5 O -0.934 6.934 6 O -0.938 6.938 7 C -0.662 4.662 8 C -0.023 4.023 9 C -0.126 4.126 10 C -0.001 4.001 11 C -0.116 4.116 12 C 0.506 3.494 13 O -0.541 6.541 14 N -0.722 5.722 15 C 0.121 3.879 16 C 0.013 3.987 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.126 4.126 26 C -0.021 4.021 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.398 0.602 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.022 0.978 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.132 0.868 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.236 7.817 -15.670 31.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.679 4.679 3 C -0.203 4.203 4 S 2.675 3.325 5 O -0.932 6.932 6 O -0.936 6.936 7 C -0.749 4.749 8 C -0.042 4.042 9 C -0.145 4.145 10 C -0.002 4.002 11 C -0.156 4.156 12 C 0.291 3.709 13 O -0.419 6.419 14 N -0.372 5.372 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.145 4.145 26 C -0.040 4.040 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.157 0.843 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.232 0.768 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.150 0.850 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.001 7.002 -14.467 31.422 hybrid contribution 1.615 0.086 -0.134 1.623 sum -25.386 7.088 -14.601 30.131 Atomic orbital electron populations 1.21688 0.89832 1.03936 1.05016 1.30027 1.06657 1.10201 1.21057 1.21720 1.02166 0.91635 1.04779 1.05644 0.74679 0.75277 0.76917 1.93560 1.81536 1.75419 1.42644 1.93568 1.85019 1.28108 1.86863 1.30330 1.24929 1.05342 1.14339 1.20855 0.93969 0.95823 0.93517 1.21138 0.94815 0.97521 1.01001 1.19700 0.94250 0.93414 0.92797 1.20882 0.91935 1.03546 0.99255 1.20268 0.82879 0.80989 0.86806 1.90734 1.61651 1.44388 1.45095 1.46330 1.06305 1.56282 1.28249 1.21745 0.96322 0.96167 0.85852 1.19326 0.87124 0.97881 0.98153 1.21049 0.91948 1.34839 1.08291 0.92246 1.24996 0.97303 0.95336 0.96641 1.69952 1.04978 1.42875 1.35482 0.86503 0.78729 0.79489 0.82782 1.20538 1.21140 1.19718 1.21140 0.93562 1.00156 0.99656 1.20857 0.95455 0.94592 0.93112 0.89702 0.90906 0.90569 0.84259 0.90462 0.90723 0.90212 0.84248 0.85009 0.87483 0.87475 0.76818 0.92529 0.92530 0.95932 0.95919 0.92828 0.84993 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.20 37.16 0.34 -0.33 16 2 C -0.57 -3.01 3.48 -26.73 -0.09 -3.10 16 3 C -0.15 -0.64 8.90 37.16 0.33 -0.31 16 4 S 2.49 23.95 4.67 -107.50 -0.50 23.45 16 5 O -0.93 -11.47 17.12 -57.54 -0.98 -12.46 16 6 O -0.94 -11.82 17.12 -57.54 -0.98 -12.81 16 7 C -0.66 -6.92 4.88 -39.58 -0.19 -7.11 16 8 C -0.02 -0.24 9.47 -39.59 -0.37 -0.61 16 9 C -0.13 -1.38 9.70 -39.58 -0.38 -1.76 16 10 C 0.00 -0.01 4.37 -104.62 -0.46 -0.47 16 11 C -0.12 -1.19 5.83 -29.03 -0.17 -1.36 16 12 C 0.51 7.94 7.82 -10.99 -0.09 7.86 16 13 O -0.54 -10.95 16.03 5.56 0.09 -10.86 16 14 N -0.72 -11.78 5.56 -60.29 -0.33 -12.12 16 15 C 0.12 2.53 5.61 -4.04 -0.02 2.50 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 17 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 21 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.13 -1.37 9.70 -39.59 -0.38 -1.75 16 26 C -0.02 -0.22 8.46 -39.58 -0.33 -0.56 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.14 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.31 6.58 -51.93 -0.34 -0.03 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.14 1.21 7.56 -52.49 -0.40 0.81 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.11 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.11 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.40 5.40 8.47 -40.82 -0.35 5.05 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 45 H 0.14 1.18 7.57 -52.49 -0.40 0.78 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -37.37 391.67 -10.42 -47.79 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.94 Total: -0.09 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -2.38 Total: -20.00 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.40 Total: -37.20 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -1.88 Total: -36.12 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 23.95 SS G_CDS: -0.50 Total: 23.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.37 -10.42 -47.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273032127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.018 kcal (2) G-P(sol) polarization free energy of solvation -37.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds