Wall clock time and date at job start Tue Mar 31 2020 23:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 S 1.81399 * 109.47004 * 119.99975 * 2 1 3 5 5 O 1.42106 * 110.54510 * 296.62679 * 4 2 1 6 6 O 1.42102 * 110.54329 * 73.37000 * 4 2 1 7 7 C 1.76193 * 104.45296 * 184.99829 * 4 2 1 8 8 C 1.38230 * 120.00237 * 269.73184 * 7 4 2 9 9 C 1.38236 * 120.00201 * 179.76168 * 8 7 4 10 10 C 1.38235 * 119.99687 * 0.48572 * 9 8 7 11 11 C 1.50707 * 119.99791 * 179.76687 * 10 9 8 12 12 C 1.50702 * 109.47058 * 270.01713 * 11 10 9 13 13 O 1.21280 * 119.99864 * 0.02562 * 12 11 10 14 14 N 1.34768 * 119.99619 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99718 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47203 * 180.02562 * 15 14 12 17 17 C 1.50702 * 109.47074 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99801 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99684 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00169 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99538 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47141 * 89.99995 * 21 19 17 23 23 H 1.48506 * 109.46498 * 209.99867 * 21 19 17 24 24 H 1.48497 * 109.47293 * 329.99406 * 21 19 17 25 25 C 1.38234 * 120.00181 * 359.78859 * 10 9 8 26 26 C 1.38231 * 119.99822 * 359.95666 * 25 10 9 27 27 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 30 30 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.08001 * 119.99729 * 359.97438 * 8 7 4 35 35 H 1.07999 * 120.00064 * 180.24510 * 9 8 7 36 36 H 1.09000 * 109.47103 * 30.02319 * 11 10 9 37 37 H 1.09005 * 109.46908 * 150.02000 * 11 10 9 38 38 H 0.96994 * 120.00708 * 0.02562 * 14 12 11 39 39 H 1.09000 * 109.47562 * 300.00448 * 15 14 12 40 40 H 1.09005 * 109.47024 * 60.00482 * 15 14 12 41 41 H 1.08994 * 109.47104 * 300.00078 * 16 15 14 42 42 H 1.08992 * 109.47049 * 60.00420 * 16 15 14 43 43 H 0.97005 * 119.99853 * 179.97438 * 20 19 17 44 44 H 1.08003 * 120.00321 * 179.97438 * 25 10 9 45 45 H 1.08002 * 119.99961 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.7386 -0.1594 2.6553 6 8 1.9419 -2.2578 1.3607 7 6 3.8838 -0.6504 1.4239 8 6 4.6687 -1.5884 0.7798 9 6 6.0405 -1.4252 0.7307 10 6 6.6283 -0.3292 1.3343 11 6 8.1243 -0.1541 1.2852 12 6 8.7486 -0.8299 2.4788 13 8 8.0478 -1.3982 3.2892 14 7 10.0857 -0.8036 2.6450 15 6 10.6927 -1.4610 3.8051 16 6 12.2115 -1.2831 3.7553 17 6 12.8359 -1.9599 4.9483 18 1 12.2118 -2.4660 5.6699 19 6 14.2038 -1.9322 5.1189 20 7 14.9637 -1.3155 4.2403 21 14 14.9778 -2.7718 6.5972 22 1 15.2985 -4.1806 6.2547 23 1 16.2241 -2.0582 6.9753 24 1 14.0262 -2.7437 7.7369 25 6 5.8438 0.6058 1.9832 26 6 4.4716 0.4454 2.0278 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 4.2099 -2.4469 0.3121 35 1 6.6535 -2.1560 0.2241 36 1 8.5126 -0.6012 0.3701 37 1 8.3664 0.9086 1.3015 38 1 10.6463 -0.3494 1.9967 39 1 10.3046 -1.0141 4.7203 40 1 10.4503 -2.5236 3.7885 41 1 12.5999 -1.7298 2.8401 42 1 12.4536 -0.2205 3.7721 43 1 15.9261 -1.2957 4.3606 44 1 6.3030 1.4619 2.4552 45 1 3.8586 1.1761 2.5345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273032127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:39 Heat of formation + Delta-G solvation = -128.388343 kcal Electronic energy + Delta-G solvation = -26132.728626 eV Core-core repulsion = 22240.711624 eV Total energy + Delta-G solvation = -3892.017002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.11284 -39.84186 -38.24571 -37.05025 -36.61750 -35.97144 -34.83308 -34.14790 -32.05736 -31.68883 -29.19496 -28.13488 -26.56476 -23.98331 -23.78592 -23.28384 -22.65746 -21.37584 -19.94344 -18.86003 -18.62232 -17.97500 -17.72114 -17.18218 -17.02131 -16.61685 -16.46743 -16.01992 -15.98046 -15.42840 -15.31849 -14.91728 -14.77516 -14.49839 -14.32961 -14.26265 -14.16504 -13.72842 -13.24873 -13.23971 -13.21076 -13.12219 -13.11214 -13.06952 -12.89252 -12.54717 -12.36996 -12.33446 -12.25010 -12.12183 -11.85535 -11.68159 -11.48384 -11.20794 -10.96595 -10.61690 -10.12338 -10.03498 -10.00568 -8.25829 -6.35910 -0.96785 -0.22989 0.32299 1.40580 1.40727 1.52164 1.65173 1.83112 2.15287 2.39194 2.61327 2.93593 3.06660 3.08967 3.54131 3.57985 3.63148 3.79375 3.94205 4.00195 4.18467 4.26296 4.33022 4.47044 4.49998 4.55527 4.56907 4.62453 4.66231 4.74496 4.76630 4.84437 4.87681 4.97669 5.06405 5.12295 5.13570 5.22858 5.28638 5.44540 5.48486 5.57512 5.77618 5.84620 6.15274 6.63353 6.77108 7.29555 7.33407 8.85677 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.001768 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.398131 B =15832.588222 C =16146.829699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.534 4.534 3 C -0.154 4.154 4 S 2.484 3.516 5 O -0.972 6.972 6 O -0.979 6.979 7 C -0.665 4.665 8 C -0.037 4.037 9 C -0.137 4.137 10 C -0.020 4.020 11 C -0.102 4.102 12 C 0.506 3.494 13 O -0.590 6.590 14 N -0.716 5.716 15 C 0.140 3.860 16 C 0.023 3.977 17 C -0.549 4.549 18 H 0.055 0.945 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.963 3.037 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.269 1.269 25 C -0.136 4.136 26 C -0.032 4.032 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.167 0.833 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.414 0.586 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.011 0.989 42 H 0.011 0.989 43 H 0.266 0.734 44 H 0.147 0.853 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.797 8.822 -17.357 33.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.649 4.649 3 C -0.212 4.212 4 S 2.669 3.331 5 O -0.969 6.969 6 O -0.976 6.976 7 C -0.752 4.752 8 C -0.055 4.055 9 C -0.155 4.155 10 C -0.020 4.020 11 C -0.141 4.141 12 C 0.293 3.707 13 O -0.471 6.471 14 N -0.367 5.367 15 C 0.016 3.984 16 C -0.015 4.015 17 C -0.588 4.588 18 H 0.074 0.926 19 C -0.190 4.190 20 N -0.563 5.563 21 Si 0.787 3.213 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.193 1.193 25 C -0.155 4.155 26 C -0.051 4.051 27 H 0.131 0.869 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.184 0.816 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.250 0.750 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.075 0.925 44 H 0.165 0.835 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -27.538 8.003 -16.146 32.910 hybrid contribution 1.698 -0.178 0.320 1.737 sum -25.840 7.824 -15.826 31.295 Atomic orbital electron populations 1.21900 0.88920 1.04610 1.06323 1.29777 1.07126 1.10211 1.17736 1.21882 1.02552 0.90799 1.05945 1.05872 0.74254 0.74717 0.78226 1.93505 1.81787 1.75596 1.46011 1.93510 1.85300 1.30888 1.87893 1.30452 1.25416 1.05295 1.14059 1.21109 0.94191 0.96334 0.93904 1.21421 0.95204 0.97782 1.01121 1.19899 0.94846 0.93835 0.93443 1.20894 0.90854 1.05017 0.97362 1.21192 0.81927 0.79929 0.87617 1.90717 1.62543 1.46525 1.47291 1.46124 1.07129 1.56185 1.27300 1.21183 0.94243 0.95671 0.87257 1.19134 0.89198 0.96540 0.96591 1.21471 0.92632 1.35293 1.09354 0.92635 1.25831 0.97824 0.95899 0.99452 1.70043 1.05379 1.43825 1.37083 0.85480 0.77873 0.78608 0.79299 1.19792 1.20360 1.19329 1.21431 0.93846 1.00736 0.99490 1.21102 0.95734 0.95034 0.93225 0.86942 0.90723 0.90692 0.81550 0.90553 0.90431 0.87759 0.83087 0.83644 0.84282 0.84224 0.74966 0.93939 0.93930 0.97073 0.97054 0.92507 0.83547 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.20 71.98 0.66 -0.42 16 2 C -0.53 -4.47 3.48 30.60 0.11 -4.36 16 3 C -0.15 -0.96 8.90 71.98 0.64 -0.31 16 4 S 2.48 47.67 4.67 -56.49 -0.26 47.41 16 5 O -0.97 -24.59 17.12 -127.65 -2.19 -26.77 16 6 O -0.98 -25.34 17.12 -127.65 -2.19 -27.53 16 7 C -0.67 -13.71 4.88 22.27 0.11 -13.61 16 8 C -0.04 -0.76 9.47 22.27 0.21 -0.55 16 9 C -0.14 -2.84 9.70 22.27 0.22 -2.62 16 10 C -0.02 -0.42 4.37 -19.86 -0.09 -0.50 16 11 C -0.10 -1.83 5.83 29.10 0.17 -1.66 16 12 C 0.51 15.34 7.82 87.66 0.69 16.02 16 13 O -0.59 -23.98 16.03 -3.03 -0.05 -24.03 16 14 N -0.72 -22.83 5.56 -463.05 -2.57 -25.40 16 15 C 0.14 5.94 5.61 86.38 0.48 6.42 16 16 C 0.02 1.13 5.09 29.85 0.15 1.28 16 17 C -0.55 -30.59 9.11 25.60 0.23 -30.36 16 18 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 19 C 0.01 0.50 5.46 84.65 0.46 0.96 16 20 N -0.92 -53.45 13.29 21.45 0.28 -53.17 16 21 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 C -0.14 -2.79 9.70 22.27 0.22 -2.58 16 26 C -0.03 -0.65 8.46 22.27 0.19 -0.46 16 27 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.17 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.47 6.58 -2.39 -0.02 0.45 16 33 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.15 2.60 7.56 -2.91 -0.02 2.57 16 35 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.14 1.65 8.09 -2.39 -0.02 1.63 16 37 H 0.14 1.64 8.09 -2.38 -0.02 1.62 16 38 H 0.41 10.60 8.47 -92.71 -0.79 9.82 16 39 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 44 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.15 2.54 7.57 -2.91 -0.02 2.52 16 Total: -1.00 -82.78 391.67 -0.29 -83.07 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.20 Total: 13.59 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 4.45 Total: -32.75 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -2.29 Total: -78.57 kcal Atomic # 8 Polarization: -73.91 SS G_CDS: -4.42 Total: -78.33 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 47.67 SS G_CDS: -0.26 Total: 47.41 kcal Total: -82.78 -0.29 -83.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273032127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.322 kcal (2) G-P(sol) polarization free energy of solvation -82.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds