Wall clock time and date at job start Tue Mar 31 2020 23:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.92781 * 2 1 4 4 C 1.54326 * 109.93988 * 238.83732 * 2 1 3 5 5 O 1.42745 * 108.48264 * 182.18886 * 4 2 1 6 6 C 1.36118 * 119.97555 * 88.30192 * 5 4 2 7 7 C 1.39588 * 116.74265 * 150.12038 * 6 5 4 8 8 C 1.37741 * 120.66370 * 177.37652 * 7 6 5 9 9 C 1.38302 * 120.11196 * 359.87528 * 8 7 6 10 10 C 1.38113 * 119.65286 * 1.18793 * 9 8 7 11 11 C 1.38298 * 120.42461 * 359.80714 * 10 9 8 12 12 C 1.50291 * 119.23786 * 177.67427 * 11 10 9 13 13 N 1.45904 * 109.94449 * 121.25331 * 2 1 3 14 14 S 1.65595 * 121.14921 * 267.93257 * 13 2 1 15 15 O 1.42103 * 104.27953 * 206.07113 * 14 13 2 16 16 O 1.42104 * 104.27715 * 333.93106 * 14 13 2 17 17 C 1.81397 * 104.45050 * 90.00290 * 14 13 2 18 18 C 1.52995 * 109.47493 * 180.02562 * 17 14 13 19 19 C 1.52996 * 109.47412 * 180.02562 * 18 17 14 20 20 C 1.50696 * 109.47331 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99856 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00396 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99680 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00362 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47213 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47606 * 119.99709 * 24 22 20 27 27 H 1.48508 * 109.47005 * 240.00103 * 24 22 20 28 28 H 1.08997 * 109.46958 * 181.16618 * 1 2 3 29 29 H 1.08998 * 109.46943 * 301.16414 * 1 2 3 30 30 H 1.08998 * 109.47482 * 61.15978 * 1 2 3 31 31 H 1.08998 * 109.63676 * 62.49543 * 4 2 1 32 32 H 1.08998 * 109.79875 * 301.98442 * 4 2 1 33 33 H 1.08005 * 119.66837 * 357.36742 * 7 6 5 34 34 H 1.07996 * 119.94768 * 179.88765 * 8 7 6 35 35 H 1.07997 * 120.17494 * 181.17027 * 9 8 7 36 36 H 1.08003 * 119.79091 * 179.77507 * 10 9 8 37 37 H 1.08998 * 109.38900 * 12.57200 * 12 11 10 38 38 H 1.09004 * 109.31291 * 252.82336 * 12 11 10 39 39 H 1.09000 * 109.46921 * 300.00059 * 17 14 13 40 40 H 1.09005 * 109.47290 * 59.99555 * 17 14 13 41 41 H 1.09000 * 109.46888 * 299.99838 * 18 17 14 42 42 H 1.09005 * 109.47413 * 59.99388 * 18 17 14 43 43 H 1.09000 * 109.46806 * 299.99697 * 19 18 17 44 44 H 1.09001 * 109.47799 * 59.99642 * 19 18 17 45 45 H 0.97001 * 120.00474 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9015 1.0248 0.0000 4 6 2.0563 -0.7507 -1.2414 5 8 3.4824 -0.7763 -1.1839 6 6 4.1186 -1.7866 -0.5300 7 6 5.3826 -2.1430 -1.0030 8 6 6.1209 -3.1177 -0.3688 9 6 5.6146 -3.7537 0.7501 10 6 4.3557 -3.4236 1.2126 11 6 3.6026 -2.4601 0.5668 12 6 2.2156 -2.1592 1.0611 13 7 2.0277 -0.7116 1.1725 14 16 2.3680 0.0905 2.5807 15 8 3.3479 -0.7184 3.2168 16 8 2.6691 1.4157 2.1653 17 6 0.8108 0.0531 3.5105 18 6 0.9979 0.7723 4.8479 19 6 -0.3152 0.7402 5.6323 20 6 -0.1307 1.4480 6.9499 21 1 0.8275 1.8774 7.2026 22 6 -1.1852 1.5475 7.8327 23 7 -2.3521 1.0251 7.5247 24 14 -0.9567 2.4255 9.4655 25 1 0.4393 2.9210 9.5701 26 1 -1.8967 3.5721 9.5469 27 1 -1.2307 1.4808 10.5781 28 1 -0.3633 -1.0274 0.0209 29 1 -0.3633 0.5318 0.8794 30 1 -0.3634 0.4957 -0.9002 31 1 1.7356 -0.2334 -2.1456 32 1 1.6716 -1.7705 -1.2468 33 1 5.7857 -1.6496 -1.8752 34 1 7.0968 -3.3856 -0.7457 35 1 6.2003 -4.5046 1.2592 36 1 3.9567 -3.9215 2.0841 37 1 2.0723 -2.6190 2.0389 38 1 1.4868 -2.5658 0.3598 39 1 0.0320 0.5536 2.9351 40 1 0.5204 -0.9818 3.6915 41 1 1.7768 0.2722 5.4235 42 1 1.2881 1.8072 4.6665 43 1 -1.0944 1.2401 5.0569 44 1 -0.6050 -0.2947 5.8138 45 1 -3.0941 1.0953 8.1455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273059472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:31 Heat of formation + Delta-G solvation = -86.864185 kcal Electronic energy + Delta-G solvation = -28104.265092 eV Core-core repulsion = 24214.048712 eV Total energy + Delta-G solvation = -3890.216379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.77869 -38.01069 -36.92708 -36.63152 -35.71120 -34.70226 -32.83395 -32.20636 -30.94172 -29.65560 -27.89329 -27.21119 -25.77339 -23.77052 -22.80477 -21.81439 -21.49734 -20.46982 -18.90408 -17.91495 -17.74480 -16.90004 -16.78387 -16.40108 -15.70893 -15.63801 -15.43520 -14.67748 -14.51693 -14.39861 -14.24663 -14.11958 -13.68230 -13.42631 -13.30080 -12.78745 -12.62000 -12.49437 -12.36006 -12.20639 -11.97524 -11.91315 -11.87765 -11.76200 -11.55051 -11.43595 -11.25754 -11.01919 -10.94808 -10.85134 -10.58302 -10.42122 -9.98087 -9.59404 -9.28865 -9.07695 -8.96585 -8.43154 -8.31171 -6.07892 -4.10832 0.38049 1.14130 1.25788 2.66487 3.04522 3.28098 3.35686 3.40868 3.57165 4.00754 4.15848 4.26799 4.41065 4.52277 4.58748 4.65696 4.78309 4.86538 4.92855 5.00793 5.06998 5.12948 5.16257 5.20223 5.24403 5.28703 5.36167 5.39258 5.43972 5.57243 5.78744 5.84261 5.91491 5.96701 6.12337 6.21560 6.30619 6.38306 6.40432 6.42127 6.63280 6.84182 7.33911 7.54414 7.63957 7.90236 8.30752 8.95594 9.54081 11.03391 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002826 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.408441 B = 9905.610420 C =10590.101430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 H 0.112 0.888 4 C 0.062 3.938 5 O -0.315 6.315 6 C 0.138 3.862 7 C -0.155 4.155 8 C -0.089 4.089 9 C -0.151 4.151 10 C -0.066 4.066 11 C -0.166 4.166 12 C 0.164 3.836 13 N -0.997 5.997 14 S 2.594 3.406 15 O -0.950 6.950 16 O -0.956 6.956 17 C -0.609 4.609 18 C -0.106 4.106 19 C 0.032 3.968 20 C -0.526 4.526 21 H 0.059 0.941 22 C 0.057 3.943 23 N -0.895 5.895 24 Si 0.894 3.106 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 -10.119 -21.464 25.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 H 0.130 0.870 4 C -0.014 4.014 5 O -0.229 6.229 6 C 0.093 3.907 7 C -0.173 4.173 8 C -0.107 4.107 9 C -0.169 4.169 10 C -0.085 4.085 11 C -0.169 4.169 12 C 0.039 3.961 13 N -0.832 5.832 14 S 2.692 3.308 15 O -0.941 6.941 16 O -0.947 6.947 17 C -0.741 4.741 18 C -0.145 4.145 19 C -0.007 4.007 20 C -0.564 4.564 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.535 5.535 24 Si 0.722 3.278 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.879 -9.598 -21.289 25.356 hybrid contribution -0.923 0.157 1.114 1.455 sum 8.956 -9.441 -20.174 24.007 Atomic orbital electron populations 1.22264 0.94130 1.03149 1.03571 1.21847 0.94433 0.98342 0.85044 0.86964 1.23515 0.78626 1.01118 0.98144 1.85873 1.20955 1.44498 1.71598 1.18951 0.92606 0.88450 0.90669 1.20818 0.94514 0.99943 1.02048 1.20900 0.99227 0.95174 0.95394 1.21067 0.96160 1.01861 0.97802 1.20884 0.93927 0.95592 0.98094 1.20220 0.98850 1.00998 0.96784 1.19967 0.92901 0.80392 1.02851 1.57911 1.81806 1.15929 1.27526 1.05656 0.77700 0.73881 0.73561 1.93575 1.55888 1.69201 1.75408 1.93552 1.83470 1.37319 1.80331 1.30654 1.20879 1.10537 1.12004 1.21505 1.03740 0.98558 0.90703 1.19057 0.89842 0.97663 0.94111 1.21294 0.97258 1.35976 1.01880 0.92312 1.25020 0.95179 0.95601 0.98586 1.69963 1.01669 1.45324 1.36496 0.86499 0.78363 0.79420 0.83550 1.19568 1.20916 1.20919 0.91588 0.91304 0.90702 0.86953 0.91095 0.85486 0.85607 0.85678 0.85307 0.88800 0.89190 0.85487 0.85472 0.91608 0.91637 0.96137 0.96132 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.58 37.16 0.36 -0.96 16 2 C 0.11 1.09 3.05 -67.56 -0.21 0.89 16 3 H 0.11 1.29 7.03 -51.93 -0.37 0.93 16 4 C 0.06 0.52 5.82 37.85 0.22 0.74 16 5 O -0.32 -3.73 9.77 -20.12 -0.20 -3.92 16 6 C 0.14 1.70 6.31 -38.92 -0.25 1.45 16 7 C -0.15 -1.70 9.86 -39.26 -0.39 -2.08 16 8 C -0.09 -0.86 10.02 -39.74 -0.40 -1.26 16 9 C -0.15 -1.50 10.06 -39.60 -0.40 -1.90 16 10 C -0.07 -0.73 9.61 -39.60 -0.38 -1.11 16 11 C -0.17 -1.96 5.50 -104.64 -0.58 -2.54 16 12 C 0.16 1.68 4.94 -5.44 -0.03 1.66 16 13 N -1.00 -11.95 2.49 -108.53 -0.27 -12.22 16 14 S 2.59 40.92 5.43 -107.50 -0.58 40.34 16 15 O -0.95 -17.35 17.11 -57.54 -0.98 -18.34 16 16 O -0.96 -17.79 16.69 -57.54 -0.96 -18.75 16 17 C -0.61 -9.51 6.18 37.16 0.23 -9.28 16 18 C -0.11 -2.17 5.16 -26.74 -0.14 -2.31 16 19 C 0.03 0.80 4.97 -27.89 -0.14 0.66 16 20 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 21 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 24 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.60 6.99 -51.93 -0.36 0.23 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.49 6.14 -51.93 -0.32 0.17 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 1.22 7.93 -52.48 -0.42 0.81 16 37 H 0.09 0.89 7.56 -51.93 -0.39 0.49 16 38 H 0.09 0.66 6.50 -51.93 -0.34 0.32 16 39 H 0.13 1.76 6.99 -51.92 -0.36 1.40 16 40 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -36.12 375.75 -10.87 -46.98 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.75 Total: -0.91 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.50 Total: -29.64 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.47 Total: -37.98 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -2.14 Total: -41.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 40.92 SS G_CDS: -0.58 Total: 40.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.12 -10.87 -46.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273059472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.883 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds