Wall clock time and date at job start Tue Mar 31 2020 23:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.92781 * 2 1 4 4 C 1.54326 * 109.93988 * 238.83732 * 2 1 3 5 5 O 1.42745 * 108.48264 * 182.18886 * 4 2 1 6 6 C 1.36118 * 119.97555 * 88.30192 * 5 4 2 7 7 C 1.39588 * 116.74265 * 150.12038 * 6 5 4 8 8 C 1.37741 * 120.66370 * 177.37652 * 7 6 5 9 9 C 1.38302 * 120.11196 * 359.87528 * 8 7 6 10 10 C 1.38113 * 119.65286 * 1.18793 * 9 8 7 11 11 C 1.38298 * 120.42461 * 359.80714 * 10 9 8 12 12 C 1.50291 * 119.23786 * 177.67427 * 11 10 9 13 13 N 1.45904 * 109.94449 * 121.25331 * 2 1 3 14 14 S 1.65595 * 121.14921 * 267.93257 * 13 2 1 15 15 O 1.42103 * 104.27953 * 206.07113 * 14 13 2 16 16 O 1.42104 * 104.27715 * 333.93106 * 14 13 2 17 17 C 1.81397 * 104.45050 * 90.00290 * 14 13 2 18 18 C 1.52995 * 109.47493 * 180.02562 * 17 14 13 19 19 C 1.52996 * 109.47412 * 180.02562 * 18 17 14 20 20 C 1.50696 * 109.47331 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99856 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00396 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99680 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00362 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47213 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47606 * 119.99709 * 24 22 20 27 27 H 1.48508 * 109.47005 * 240.00103 * 24 22 20 28 28 H 1.08997 * 109.46958 * 181.16618 * 1 2 3 29 29 H 1.08998 * 109.46943 * 301.16414 * 1 2 3 30 30 H 1.08998 * 109.47482 * 61.15978 * 1 2 3 31 31 H 1.08998 * 109.63676 * 62.49543 * 4 2 1 32 32 H 1.08998 * 109.79875 * 301.98442 * 4 2 1 33 33 H 1.08005 * 119.66837 * 357.36742 * 7 6 5 34 34 H 1.07996 * 119.94768 * 179.88765 * 8 7 6 35 35 H 1.07997 * 120.17494 * 181.17027 * 9 8 7 36 36 H 1.08003 * 119.79091 * 179.77507 * 10 9 8 37 37 H 1.08998 * 109.38900 * 12.57200 * 12 11 10 38 38 H 1.09004 * 109.31291 * 252.82336 * 12 11 10 39 39 H 1.09000 * 109.46921 * 300.00059 * 17 14 13 40 40 H 1.09005 * 109.47290 * 59.99555 * 17 14 13 41 41 H 1.09000 * 109.46888 * 299.99838 * 18 17 14 42 42 H 1.09005 * 109.47413 * 59.99388 * 18 17 14 43 43 H 1.09000 * 109.46806 * 299.99697 * 19 18 17 44 44 H 1.09001 * 109.47799 * 59.99642 * 19 18 17 45 45 H 0.97001 * 120.00474 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9015 1.0248 0.0000 4 6 2.0563 -0.7507 -1.2414 5 8 3.4824 -0.7763 -1.1839 6 6 4.1186 -1.7866 -0.5300 7 6 5.3826 -2.1430 -1.0030 8 6 6.1209 -3.1177 -0.3688 9 6 5.6146 -3.7537 0.7501 10 6 4.3557 -3.4236 1.2126 11 6 3.6026 -2.4601 0.5668 12 6 2.2156 -2.1592 1.0611 13 7 2.0277 -0.7116 1.1725 14 16 2.3680 0.0905 2.5807 15 8 3.3479 -0.7184 3.2168 16 8 2.6691 1.4157 2.1653 17 6 0.8108 0.0531 3.5105 18 6 0.9979 0.7723 4.8479 19 6 -0.3152 0.7402 5.6323 20 6 -0.1307 1.4480 6.9499 21 1 0.8275 1.8774 7.2026 22 6 -1.1852 1.5475 7.8327 23 7 -2.3521 1.0251 7.5247 24 14 -0.9567 2.4255 9.4655 25 1 0.4393 2.9210 9.5701 26 1 -1.8967 3.5721 9.5469 27 1 -1.2307 1.4808 10.5781 28 1 -0.3633 -1.0274 0.0209 29 1 -0.3633 0.5318 0.8794 30 1 -0.3634 0.4957 -0.9002 31 1 1.7356 -0.2334 -2.1456 32 1 1.6716 -1.7705 -1.2468 33 1 5.7857 -1.6496 -1.8752 34 1 7.0968 -3.3856 -0.7457 35 1 6.2003 -4.5046 1.2592 36 1 3.9567 -3.9215 2.0841 37 1 2.0723 -2.6190 2.0389 38 1 1.4868 -2.5658 0.3598 39 1 0.0320 0.5536 2.9351 40 1 0.5204 -0.9818 3.6915 41 1 1.7768 0.2722 5.4235 42 1 1.2881 1.8072 4.6665 43 1 -1.0944 1.2401 5.0569 44 1 -0.6050 -0.2947 5.8138 45 1 -3.0941 1.0953 8.1455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273059472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:30 Heat of formation + Delta-G solvation = -110.759544 kcal Electronic energy + Delta-G solvation = -28105.301272 eV Core-core repulsion = 24214.048712 eV Total energy + Delta-G solvation = -3891.252560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.55228 -38.80194 -38.24415 -37.47506 -37.06450 -36.51464 -34.20693 -33.56640 -31.72973 -30.42978 -29.71509 -27.97273 -26.49753 -25.64964 -23.62982 -22.75388 -22.46390 -21.94423 -19.99154 -18.97657 -18.63663 -18.53755 -17.84569 -17.51660 -16.96858 -16.70886 -16.50747 -16.41237 -15.79719 -15.43534 -15.15209 -14.89523 -14.54125 -14.48293 -14.20336 -14.10932 -14.02478 -13.70588 -13.51202 -13.23289 -13.22033 -13.11102 -13.07274 -12.95476 -12.78060 -12.66830 -12.61528 -12.38234 -12.22341 -12.16439 -11.81340 -11.73797 -11.40019 -11.34542 -11.12232 -10.59901 -10.17602 -9.77886 -9.10574 -8.24870 -6.35791 -0.86840 0.35628 0.46318 1.38235 1.39115 1.52299 1.58753 2.34170 2.38276 2.75851 2.78296 3.04592 3.08750 3.44832 3.69071 3.76528 3.79111 3.84647 4.00605 4.06507 4.17605 4.25537 4.32973 4.40104 4.43401 4.50139 4.54849 4.58942 4.64019 4.72542 4.77563 4.86048 4.90640 5.00842 5.08336 5.18777 5.33060 5.37107 5.42537 5.51258 5.57122 5.59864 5.61680 5.76794 5.90672 6.17473 6.57793 6.79399 7.33615 8.86779 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002826 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.408441 B = 9905.610420 C =10590.101430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 H 0.091 0.909 4 C 0.060 3.940 5 O -0.334 6.334 6 C 0.117 3.883 7 C -0.170 4.170 8 C -0.090 4.090 9 C -0.157 4.157 10 C -0.084 4.084 11 C -0.183 4.183 12 C 0.156 3.844 13 N -0.990 5.990 14 S 2.611 3.389 15 O -0.979 6.979 16 O -0.990 6.990 17 C -0.604 4.604 18 C -0.106 4.106 19 C 0.034 3.966 20 C -0.553 4.553 21 H 0.058 0.942 22 C 0.004 3.996 23 N -0.928 5.928 24 Si 0.962 3.038 25 H -0.265 1.265 26 H -0.276 1.276 27 H -0.275 1.275 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.004 0.996 44 H 0.005 0.995 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.108 -10.976 -22.352 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 H 0.109 0.891 4 C -0.016 4.016 5 O -0.248 6.248 6 C 0.072 3.928 7 C -0.189 4.189 8 C -0.108 4.108 9 C -0.175 4.175 10 C -0.103 4.103 11 C -0.186 4.186 12 C 0.031 3.969 13 N -0.827 5.827 14 S 2.709 3.291 15 O -0.969 6.969 16 O -0.981 6.981 17 C -0.735 4.735 18 C -0.145 4.145 19 C -0.004 4.004 20 C -0.591 4.591 21 H 0.076 0.924 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.786 3.214 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.201 1.201 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.159 0.841 32 H 0.109 0.891 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.863 -10.449 -22.173 26.421 hybrid contribution -0.901 0.383 1.304 1.631 sum 8.962 -10.067 -20.868 24.842 Atomic orbital electron populations 1.22277 0.92062 1.04455 1.04110 1.22068 0.96055 0.97351 0.84822 0.89128 1.23789 0.77121 1.02399 0.98259 1.85851 1.22734 1.44672 1.71585 1.19231 0.93351 0.88919 0.91279 1.21113 0.94539 1.00546 1.02691 1.21251 1.00120 0.94394 0.95027 1.21412 0.96040 1.02158 0.97918 1.21177 0.94587 0.95924 0.98563 1.20434 0.99705 1.01417 0.96999 1.20288 0.93308 0.79057 1.04212 1.57590 1.81771 1.16823 1.26482 1.04851 0.77160 0.73044 0.73997 1.93530 1.57114 1.69591 1.76669 1.93504 1.84033 1.39474 1.81048 1.30574 1.21857 1.11472 1.09612 1.21315 1.01124 0.99257 0.92821 1.18936 0.91722 0.96046 0.93713 1.21754 0.97450 1.36490 1.03450 0.92393 1.25910 0.94839 0.96279 1.02367 1.70064 1.02457 1.46339 1.37953 0.85443 0.78591 0.78384 0.78943 1.18937 1.20117 1.20083 0.89792 0.92607 0.88467 0.84089 0.89141 0.84627 0.83003 0.83569 0.84385 0.88188 0.85742 0.83676 0.83292 0.91736 0.91999 0.97741 0.97626 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.58 71.98 0.69 -1.50 16 2 C 0.10 1.89 3.05 45.55 0.14 2.03 16 3 H 0.09 2.07 7.03 -2.39 -0.02 2.05 16 4 C 0.06 0.87 5.82 72.43 0.42 1.29 16 5 O -0.33 -7.56 9.77 -94.89 -0.93 -8.48 16 6 C 0.12 2.78 6.31 22.70 0.14 2.92 16 7 C -0.17 -3.59 9.86 22.48 0.22 -3.37 16 8 C -0.09 -1.61 10.02 22.17 0.22 -1.38 16 9 C -0.16 -2.91 10.06 22.26 0.22 -2.69 16 10 C -0.08 -1.77 9.61 22.25 0.21 -1.56 16 11 C -0.18 -4.13 5.50 -19.88 -0.11 -4.24 16 12 C 0.16 2.92 4.94 85.52 0.42 3.34 16 13 N -0.99 -22.58 2.49 -497.28 -1.24 -23.82 16 14 S 2.61 82.17 5.43 -56.49 -0.31 81.87 16 15 O -0.98 -35.90 17.11 -127.65 -2.18 -38.09 16 16 O -0.99 -37.53 16.69 -127.65 -2.13 -39.66 16 17 C -0.60 -18.57 6.18 71.98 0.44 -18.13 16 18 C -0.11 -4.41 5.16 30.59 0.16 -4.25 16 19 C 0.03 1.76 4.97 29.85 0.15 1.91 16 20 C -0.55 -31.67 9.11 25.60 0.23 -31.43 16 21 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 22 C 0.00 0.25 5.46 84.66 0.46 0.72 16 23 N -0.93 -55.34 13.29 21.45 0.28 -55.05 16 24 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 27 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.87 6.99 -2.39 -0.02 0.86 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 0.95 6.14 -2.39 -0.01 0.94 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.14 2.50 7.93 -2.91 -0.02 2.48 16 37 H 0.10 1.73 7.56 -2.39 -0.02 1.71 16 38 H 0.12 1.43 6.50 -2.38 -0.02 1.41 16 39 H 0.15 3.91 6.99 -2.39 -0.02 3.90 16 40 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 41 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 43 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -79.11 375.75 0.54 -78.57 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.98 Total: 14.73 kcal Atomic # 6 Polarization: -60.37 SS G_CDS: 4.03 Total: -56.33 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -0.95 Total: -78.87 kcal Atomic # 8 Polarization: -80.99 SS G_CDS: -5.24 Total: -86.23 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 82.17 SS G_CDS: -0.31 Total: 81.87 kcal Total: -79.11 0.54 -78.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273059472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.190 kcal (2) G-P(sol) polarization free energy of solvation -79.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds