Wall clock time and date at job start Tue Mar 31 2020 23:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.00250 * 2 1 4 4 C 1.54313 * 109.95103 * 121.23337 * 2 1 3 5 5 O 1.42736 * 108.86025 * 177.86711 * 4 2 1 6 6 C 1.36134 * 119.83089 * 271.79652 * 5 4 2 7 7 C 1.39653 * 116.59054 * 210.53188 * 6 5 4 8 8 C 1.37740 * 120.64309 * 181.76167 * 7 6 5 9 9 C 1.38293 * 120.11946 * 0.12841 * 8 7 6 10 10 C 1.38101 * 119.64860 * 359.19697 * 9 8 7 11 11 C 1.38363 * 120.39775 * 359.90865 * 10 9 8 12 12 C 1.50330 * 118.99443 * 183.74740 * 11 10 9 13 13 N 1.46295 * 110.15650 * 238.69293 * 2 1 3 14 14 S 1.65600 * 121.04591 * 92.13254 * 13 2 1 15 15 O 1.42094 * 104.27692 * 26.16920 * 14 13 2 16 16 O 1.42102 * 104.27607 * 154.02845 * 14 13 2 17 17 C 1.81402 * 104.44793 * 270.10000 * 14 13 2 18 18 C 1.53002 * 109.47089 * 180.02562 * 17 14 13 19 19 C 1.52993 * 109.47189 * 180.02562 * 18 17 14 20 20 C 1.50702 * 109.47385 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99709 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00207 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99977 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99820 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47209 * 90.00210 * 24 22 20 26 26 H 1.48504 * 109.47118 * 210.00244 * 24 22 20 27 27 H 1.48501 * 109.47212 * 329.99655 * 24 22 20 28 28 H 1.09000 * 109.47432 * 298.76185 * 1 2 3 29 29 H 1.08998 * 109.47141 * 58.77047 * 1 2 3 30 30 H 1.09006 * 109.47338 * 178.76641 * 1 2 3 31 31 H 1.09002 * 109.59428 * 58.01555 * 4 2 1 32 32 H 1.09003 * 109.59125 * 297.71507 * 4 2 1 33 33 H 1.07995 * 119.67430 * 1.78301 * 7 6 5 34 34 H 1.08001 * 119.93897 * 180.15248 * 8 7 6 35 35 H 1.08004 * 120.17435 * 179.20796 * 9 8 7 36 36 H 1.07992 * 119.80203 * 179.89077 * 10 9 8 37 37 H 1.08999 * 109.41715 * 346.03707 * 12 11 10 38 38 H 1.08994 * 109.42049 * 105.90896 * 12 11 10 39 39 H 1.09006 * 109.47351 * 299.99587 * 17 14 13 40 40 H 1.08993 * 109.47288 * 60.00066 * 17 14 13 41 41 H 1.09004 * 109.46870 * 300.00102 * 18 17 14 42 42 H 1.09002 * 109.47525 * 59.99810 * 18 17 14 43 43 H 1.09006 * 109.47122 * 299.99182 * 19 18 17 44 44 H 1.08998 * 109.47853 * 59.99759 * 19 18 17 45 45 H 0.97005 * 119.99905 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0566 -0.7521 1.2403 5 8 3.4828 -0.7812 1.1913 6 6 4.1174 -1.7925 0.5373 7 6 5.3718 -2.1633 1.0267 8 6 6.1031 -3.1521 0.4064 9 6 5.6002 -3.7880 -0.7139 10 6 4.3546 -3.4379 -1.1968 11 6 3.6091 -2.4580 -0.5655 12 6 2.2230 -2.1612 -1.0661 13 7 2.0341 -0.7136 -1.1734 14 16 2.3780 0.0906 -2.5796 15 8 2.6779 1.4151 -2.1614 16 8 3.3597 -0.7173 -3.2142 17 6 0.8232 0.0546 -3.5134 18 6 1.0141 0.7747 -4.8498 19 6 -0.2974 0.7449 -5.6371 20 6 -0.1092 1.4536 -6.9537 21 1 0.8498 1.8828 -7.2036 22 6 -1.1613 1.5541 -7.8391 23 7 -2.3290 1.0311 -7.5349 24 14 -0.9282 2.4333 -9.4707 25 1 -0.4808 1.4592 -10.4983 26 1 -2.2149 3.0425 -9.8931 27 1 0.0965 3.4972 -9.3178 28 1 -0.3634 0.4945 0.9009 29 1 -0.3633 0.5328 -0.8787 30 1 -0.3634 -1.0275 -0.0221 31 1 1.6700 -1.7713 1.2411 32 1 1.7323 -0.2374 2.1448 33 1 5.7720 -1.6701 1.9001 34 1 7.0709 -3.4315 0.7960 35 1 6.1784 -4.5546 -1.2084 36 1 3.9602 -3.9317 -2.0725 37 1 2.0861 -2.6181 -2.0462 38 1 1.4909 -2.5706 -0.3701 39 1 0.5334 -0.9801 -3.6968 40 1 0.0429 0.5541 -2.9393 41 1 1.3042 1.8094 -4.6667 42 1 1.7943 0.2748 -5.4238 43 1 -0.5878 -0.2897 -5.8202 44 1 -1.0773 1.2450 -5.0631 45 1 -3.0693 1.1021 -8.1577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273059476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:35 Heat of formation + Delta-G solvation = -86.862829 kcal Electronic energy + Delta-G solvation = -28094.967938 eV Core-core repulsion = 24204.751618 eV Total energy + Delta-G solvation = -3890.216321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.77283 -38.00068 -36.92646 -36.61821 -35.70919 -34.70016 -32.84187 -32.20451 -30.93923 -29.66569 -27.88974 -27.19778 -25.77441 -23.76737 -22.80925 -21.81396 -21.49124 -20.46956 -18.89891 -17.91110 -17.73988 -16.89075 -16.78192 -16.40121 -15.70931 -15.63691 -15.43222 -14.67768 -14.52048 -14.40318 -14.24538 -14.12468 -13.67406 -13.42443 -13.30722 -12.78438 -12.61596 -12.49317 -12.36167 -12.20830 -11.97820 -11.91312 -11.87640 -11.76142 -11.54447 -11.43340 -11.25249 -11.02278 -10.93499 -10.86250 -10.58381 -10.43075 -9.97596 -9.59402 -9.29750 -9.08139 -8.96480 -8.42629 -8.32079 -6.07663 -4.10713 0.38422 1.14320 1.25042 2.66182 3.05066 3.29337 3.35438 3.39754 3.57360 4.01047 4.16209 4.26221 4.41106 4.52222 4.58765 4.65541 4.78541 4.85777 4.92676 5.00924 5.06970 5.12698 5.16313 5.20135 5.24247 5.28839 5.36100 5.38758 5.43786 5.57148 5.78521 5.84079 5.91172 5.96384 6.11960 6.21489 6.30259 6.37927 6.40100 6.42218 6.63050 6.84284 7.33679 7.54312 7.64091 7.90297 8.30824 8.95455 9.54150 11.03566 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.002821 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.878126 B = 9924.242894 C =10604.872043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 H 0.113 0.887 4 C 0.062 3.938 5 O -0.315 6.315 6 C 0.138 3.862 7 C -0.154 4.154 8 C -0.089 4.089 9 C -0.150 4.150 10 C -0.068 4.068 11 C -0.164 4.164 12 C 0.164 3.836 13 N -0.998 5.998 14 S 2.594 3.406 15 O -0.956 6.956 16 O -0.951 6.951 17 C -0.609 4.609 18 C -0.106 4.106 19 C 0.032 3.968 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.058 3.942 23 N -0.896 5.896 24 Si 0.894 3.106 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.272 1.272 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.019 -10.170 21.511 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 H 0.131 0.869 4 C -0.014 4.014 5 O -0.229 6.229 6 C 0.093 3.907 7 C -0.173 4.173 8 C -0.108 4.108 9 C -0.168 4.168 10 C -0.086 4.086 11 C -0.167 4.167 12 C 0.039 3.961 13 N -0.833 5.833 14 S 2.692 3.308 15 O -0.947 6.947 16 O -0.941 6.941 17 C -0.741 4.741 18 C -0.145 4.145 19 C -0.006 4.006 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.143 4.143 23 N -0.535 5.535 24 Si 0.722 3.278 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.197 1.197 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.766 -9.650 21.344 25.378 hybrid contribution -0.901 0.154 -1.130 1.453 sum 8.865 -9.496 20.213 24.028 Atomic orbital electron populations 1.22250 0.94049 1.03164 1.03593 1.21922 0.94414 0.98314 0.84989 0.86943 1.23493 0.78683 1.01107 0.98165 1.85892 1.20876 1.44714 1.71377 1.18909 0.92749 0.88507 0.90583 1.20846 0.94764 0.99662 1.01984 1.20900 0.99215 0.95158 0.95489 1.21067 0.96298 1.01773 0.97708 1.20905 0.94072 0.95417 0.98234 1.20194 0.98919 1.00818 0.96765 1.19992 0.92868 0.80409 1.02835 1.57993 1.81654 1.15940 1.27696 1.05654 0.77690 0.73881 0.73584 1.93550 1.83496 1.37381 1.80262 1.93575 1.55793 1.69241 1.75482 1.30656 1.20868 1.10534 1.12035 1.21506 1.03719 0.98549 0.90734 1.19052 0.89866 0.97653 0.94068 1.21257 0.97266 1.36063 1.01902 0.92365 1.25017 0.95163 0.95601 0.98566 1.69957 1.01726 1.45302 1.36479 0.86554 0.77577 0.79944 0.83745 1.20541 1.21147 1.19709 0.90663 0.91278 0.91583 0.91152 0.86967 0.85473 0.85610 0.85678 0.85292 0.88776 0.89173 0.85480 0.85489 0.91646 0.91604 0.96141 0.96134 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.59 37.16 0.36 -0.95 16 2 C 0.11 1.09 3.08 -67.35 -0.21 0.89 16 3 H 0.11 1.29 7.03 -51.93 -0.36 0.93 16 4 C 0.06 0.52 5.80 37.84 0.22 0.74 16 5 O -0.31 -3.72 9.80 -20.17 -0.20 -3.92 16 6 C 0.14 1.69 6.30 -38.97 -0.25 1.44 16 7 C -0.15 -1.68 9.86 -39.24 -0.39 -2.07 16 8 C -0.09 -0.86 10.02 -39.74 -0.40 -1.26 16 9 C -0.15 -1.49 10.06 -39.61 -0.40 -1.89 16 10 C -0.07 -0.75 9.61 -39.59 -0.38 -1.13 16 11 C -0.16 -1.94 5.49 -104.67 -0.57 -2.52 16 12 C 0.16 1.69 4.94 -5.44 -0.03 1.66 16 13 N -1.00 -11.96 2.51 -108.28 -0.27 -12.23 16 14 S 2.59 40.93 5.42 -107.50 -0.58 40.35 16 15 O -0.96 -17.80 16.69 -57.54 -0.96 -18.76 16 16 O -0.95 -17.37 17.09 -57.54 -0.98 -18.35 16 17 C -0.61 -9.52 6.18 37.16 0.23 -9.29 16 18 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 19 C 0.03 0.81 4.97 -27.89 -0.14 0.67 16 20 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 23 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 24 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.60 7.01 -51.93 -0.36 0.23 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.48 6.14 -51.93 -0.32 0.16 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.13 1.22 7.92 -52.49 -0.42 0.81 16 37 H 0.09 0.89 7.55 -51.93 -0.39 0.50 16 38 H 0.09 0.66 6.52 -51.93 -0.34 0.32 16 39 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 40 H 0.13 1.76 7.01 -51.93 -0.36 1.39 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 375.81 15.07 5.66 5.66 Total: -1.00 -36.12 375.81 -10.87 -46.99 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.75 Total: -0.90 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.50 Total: -29.64 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.46 Total: -38.01 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -2.14 Total: -41.03 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.58 Total: 40.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.12 -10.87 -46.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273059476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.874 kcal (2) G-P(sol) polarization free energy of solvation -36.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds