Wall clock time and date at job start Tue Mar 31 2020 23:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.00250 * 2 1 4 4 C 1.54313 * 109.95103 * 121.23337 * 2 1 3 5 5 O 1.42736 * 108.86025 * 177.86711 * 4 2 1 6 6 C 1.36134 * 119.83089 * 271.79652 * 5 4 2 7 7 C 1.39653 * 116.59054 * 210.53188 * 6 5 4 8 8 C 1.37740 * 120.64309 * 181.76167 * 7 6 5 9 9 C 1.38293 * 120.11946 * 0.12841 * 8 7 6 10 10 C 1.38101 * 119.64860 * 359.19697 * 9 8 7 11 11 C 1.38363 * 120.39775 * 359.90865 * 10 9 8 12 12 C 1.50330 * 118.99443 * 183.74740 * 11 10 9 13 13 N 1.46295 * 110.15650 * 238.69293 * 2 1 3 14 14 S 1.65600 * 121.04591 * 92.13254 * 13 2 1 15 15 O 1.42094 * 104.27692 * 26.16920 * 14 13 2 16 16 O 1.42102 * 104.27607 * 154.02845 * 14 13 2 17 17 C 1.81402 * 104.44793 * 270.10000 * 14 13 2 18 18 C 1.53002 * 109.47089 * 180.02562 * 17 14 13 19 19 C 1.52993 * 109.47189 * 180.02562 * 18 17 14 20 20 C 1.50702 * 109.47385 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99709 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00207 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99977 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99820 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47209 * 90.00210 * 24 22 20 26 26 H 1.48504 * 109.47118 * 210.00244 * 24 22 20 27 27 H 1.48501 * 109.47212 * 329.99655 * 24 22 20 28 28 H 1.09000 * 109.47432 * 298.76185 * 1 2 3 29 29 H 1.08998 * 109.47141 * 58.77047 * 1 2 3 30 30 H 1.09006 * 109.47338 * 178.76641 * 1 2 3 31 31 H 1.09002 * 109.59428 * 58.01555 * 4 2 1 32 32 H 1.09003 * 109.59125 * 297.71507 * 4 2 1 33 33 H 1.07995 * 119.67430 * 1.78301 * 7 6 5 34 34 H 1.08001 * 119.93897 * 180.15248 * 8 7 6 35 35 H 1.08004 * 120.17435 * 179.20796 * 9 8 7 36 36 H 1.07992 * 119.80203 * 179.89077 * 10 9 8 37 37 H 1.08999 * 109.41715 * 346.03707 * 12 11 10 38 38 H 1.08994 * 109.42049 * 105.90896 * 12 11 10 39 39 H 1.09006 * 109.47351 * 299.99587 * 17 14 13 40 40 H 1.08993 * 109.47288 * 60.00066 * 17 14 13 41 41 H 1.09004 * 109.46870 * 300.00102 * 18 17 14 42 42 H 1.09002 * 109.47525 * 59.99810 * 18 17 14 43 43 H 1.09006 * 109.47122 * 299.99182 * 19 18 17 44 44 H 1.08998 * 109.47853 * 59.99759 * 19 18 17 45 45 H 0.97005 * 119.99905 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0566 -0.7521 1.2403 5 8 3.4828 -0.7812 1.1913 6 6 4.1174 -1.7925 0.5373 7 6 5.3718 -2.1633 1.0267 8 6 6.1031 -3.1521 0.4064 9 6 5.6002 -3.7880 -0.7139 10 6 4.3546 -3.4379 -1.1968 11 6 3.6091 -2.4580 -0.5655 12 6 2.2230 -2.1612 -1.0661 13 7 2.0341 -0.7136 -1.1734 14 16 2.3780 0.0906 -2.5796 15 8 2.6779 1.4151 -2.1614 16 8 3.3597 -0.7173 -3.2142 17 6 0.8232 0.0546 -3.5134 18 6 1.0141 0.7747 -4.8498 19 6 -0.2974 0.7449 -5.6371 20 6 -0.1092 1.4536 -6.9537 21 1 0.8498 1.8828 -7.2036 22 6 -1.1613 1.5541 -7.8391 23 7 -2.3290 1.0311 -7.5349 24 14 -0.9282 2.4333 -9.4707 25 1 -0.4808 1.4592 -10.4983 26 1 -2.2149 3.0425 -9.8931 27 1 0.0965 3.4972 -9.3178 28 1 -0.3634 0.4945 0.9009 29 1 -0.3633 0.5328 -0.8787 30 1 -0.3634 -1.0275 -0.0221 31 1 1.6700 -1.7713 1.2411 32 1 1.7323 -0.2374 2.1448 33 1 5.7720 -1.6701 1.9001 34 1 7.0709 -3.4315 0.7960 35 1 6.1784 -4.5546 -1.2084 36 1 3.9602 -3.9317 -2.0725 37 1 2.0861 -2.6181 -2.0462 38 1 1.4909 -2.5706 -0.3701 39 1 0.5334 -0.9801 -3.6968 40 1 0.0429 0.5541 -2.9393 41 1 1.3042 1.8094 -4.6667 42 1 1.7943 0.2748 -5.4238 43 1 -0.5878 -0.2897 -5.8202 44 1 -1.0773 1.2450 -5.0631 45 1 -3.0693 1.1021 -8.1577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273059476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:34 Heat of formation + Delta-G solvation = -110.773710 kcal Electronic energy + Delta-G solvation = -28096.004792 eV Core-core repulsion = 24204.751618 eV Total energy + Delta-G solvation = -3891.253174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.54536 -38.79046 -38.24368 -37.46302 -37.06226 -36.51338 -34.20580 -33.57301 -31.72612 -30.43843 -29.71297 -27.95795 -26.49817 -25.64767 -23.63117 -22.75246 -22.45764 -21.94375 -19.98886 -18.97000 -18.63419 -18.53280 -17.83782 -17.51449 -16.96783 -16.70730 -16.50913 -16.41317 -15.79665 -15.43467 -15.15572 -14.89827 -14.53209 -14.47465 -14.19949 -14.11350 -14.02796 -13.70497 -13.51258 -13.23139 -13.21802 -13.10967 -13.06924 -12.95132 -12.77002 -12.67472 -12.62494 -12.37694 -12.22259 -12.16479 -11.81008 -11.74131 -11.40987 -11.34669 -11.12760 -10.59368 -10.17795 -9.77574 -9.11317 -8.24736 -6.35774 -0.86525 0.36031 0.45876 1.39035 1.39607 1.51077 1.58532 2.34798 2.38306 2.76117 2.78726 3.04663 3.08856 3.44379 3.69080 3.76645 3.78829 3.84785 4.00416 4.06754 4.17002 4.25531 4.32993 4.40170 4.43381 4.49897 4.54869 4.58961 4.64089 4.72154 4.77638 4.85974 4.90601 5.00827 5.08209 5.18553 5.32776 5.37012 5.42334 5.50725 5.57062 5.59842 5.61583 5.76705 5.90679 6.17444 6.57620 6.79229 7.33605 8.86714 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.002821 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.878126 B = 9924.242894 C =10604.872043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 H 0.091 0.909 4 C 0.060 3.940 5 O -0.333 6.333 6 C 0.116 3.884 7 C -0.170 4.170 8 C -0.090 4.090 9 C -0.156 4.156 10 C -0.085 4.085 11 C -0.182 4.182 12 C 0.156 3.844 13 N -0.991 5.991 14 S 2.611 3.389 15 O -0.990 6.990 16 O -0.979 6.979 17 C -0.604 4.604 18 C -0.106 4.106 19 C 0.034 3.966 20 C -0.555 4.555 21 H 0.058 0.942 22 C 0.005 3.995 23 N -0.928 5.928 24 Si 0.962 3.038 25 H -0.271 1.271 26 H -0.279 1.279 27 H -0.266 1.266 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.005 0.995 44 H 0.004 0.996 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.024 -11.043 22.393 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 H 0.109 0.891 4 C -0.016 4.016 5 O -0.248 6.248 6 C 0.071 3.929 7 C -0.188 4.188 8 C -0.108 4.108 9 C -0.174 4.174 10 C -0.104 4.104 11 C -0.185 4.185 12 C 0.032 3.968 13 N -0.828 5.828 14 S 2.709 3.291 15 O -0.981 6.981 16 O -0.969 6.969 17 C -0.735 4.735 18 C -0.145 4.145 19 C -0.004 4.004 20 C -0.593 4.593 21 H 0.076 0.924 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.786 3.214 25 H -0.196 1.196 26 H -0.204 1.204 27 H -0.190 1.190 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.774 -10.517 22.222 26.456 hybrid contribution -0.886 0.383 -1.317 1.633 sum 8.888 -10.134 20.904 24.874 Atomic orbital electron populations 1.22264 0.91969 1.04466 1.04145 1.22146 0.96039 0.97317 0.84749 0.89105 1.23765 0.77194 1.02371 0.98296 1.85869 1.22652 1.44893 1.71372 1.19190 0.93505 0.88980 0.91192 1.21139 0.94783 1.00272 1.02618 1.21252 1.00070 0.94381 0.95139 1.21413 0.96146 1.02093 0.97788 1.21196 0.94728 0.95729 0.98710 1.20414 0.99783 1.01268 0.96999 1.20313 0.93285 0.79077 1.04167 1.57675 1.81625 1.16828 1.26644 1.04852 0.77152 0.73049 0.74019 1.93502 1.84056 1.39533 1.80978 1.93530 1.57025 1.69632 1.76741 1.30576 1.21848 1.11456 1.09649 1.21317 1.01114 0.99246 0.92841 1.18932 0.91736 0.96028 0.93690 1.21729 0.97494 1.36578 1.03468 0.92373 1.25911 0.94817 0.96284 1.02361 1.70061 1.02512 1.46326 1.37914 0.85495 0.77839 0.78921 0.79133 1.19631 1.20378 1.19033 0.88415 0.92571 0.89794 0.89215 0.84103 0.84623 0.82999 0.83542 0.84369 0.88185 0.85737 0.83311 0.83677 0.92014 0.91722 0.97651 0.97746 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.59 71.98 0.69 -1.48 16 2 C 0.10 1.90 3.08 45.48 0.14 2.04 16 3 H 0.09 2.07 7.03 -2.39 -0.02 2.06 16 4 C 0.06 0.87 5.80 72.43 0.42 1.29 16 5 O -0.33 -7.55 9.80 -95.08 -0.93 -8.48 16 6 C 0.12 2.76 6.30 22.67 0.14 2.90 16 7 C -0.17 -3.57 9.86 22.49 0.22 -3.35 16 8 C -0.09 -1.61 10.02 22.16 0.22 -1.38 16 9 C -0.16 -2.87 10.06 22.25 0.22 -2.65 16 10 C -0.08 -1.79 9.61 22.27 0.21 -1.58 16 11 C -0.18 -4.11 5.49 -19.89 -0.11 -4.22 16 12 C 0.16 2.93 4.94 85.54 0.42 3.35 16 13 N -0.99 -22.62 2.51 -496.47 -1.25 -23.86 16 14 S 2.61 82.23 5.42 -56.49 -0.31 81.93 16 15 O -0.99 -37.55 16.69 -127.65 -2.13 -39.68 16 16 O -0.98 -35.95 17.09 -127.65 -2.18 -38.13 16 17 C -0.60 -18.60 6.18 71.98 0.44 -18.15 16 18 C -0.11 -4.41 5.16 30.59 0.16 -4.25 16 19 C 0.03 1.78 4.97 29.85 0.15 1.93 16 20 C -0.55 -31.75 9.11 25.60 0.23 -31.52 16 21 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 22 C 0.00 0.27 5.46 84.65 0.46 0.73 16 23 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 24 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.88 7.01 -2.39 -0.02 0.86 16 30 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.09 0.95 6.14 -2.39 -0.01 0.94 16 32 H 0.14 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 36 H 0.14 2.49 7.92 -2.91 -0.02 2.47 16 37 H 0.10 1.74 7.55 -2.39 -0.02 1.72 16 38 H 0.12 1.44 6.52 -2.39 -0.02 1.42 16 39 H 0.15 3.89 8.14 -2.39 -0.02 3.87 16 40 H 0.15 3.91 7.01 -2.39 -0.02 3.90 16 41 H 0.06 2.56 8.14 -2.38 -0.02 2.55 16 42 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 44 H 0.00 0.22 8.14 -2.39 -0.02 0.21 16 45 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -79.15 375.81 0.53 -78.62 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.98 Total: 14.82 kcal Atomic # 6 Polarization: -60.38 SS G_CDS: 4.03 Total: -56.34 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -0.96 Total: -78.98 kcal Atomic # 8 Polarization: -81.06 SS G_CDS: -5.24 Total: -86.30 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 82.23 SS G_CDS: -0.31 Total: 81.93 kcal Total: -79.15 0.53 -78.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273059476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.154 kcal (2) G-P(sol) polarization free energy of solvation -79.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds