Wall clock time and date at job start Tue Mar 31 2020 22:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46707 * 2 1 4 4 H 1.09000 * 109.46533 * 178.71810 * 3 2 1 5 5 C 1.50702 * 109.47453 * 298.71736 * 3 2 1 6 6 H 1.08002 * 119.99847 * 120.00095 * 5 3 2 7 7 C 1.37872 * 119.99714 * 300.00139 * 5 3 2 8 8 N 1.31513 * 120.00504 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99668 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46860 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47009 * 120.00127 * 9 7 5 12 12 H 1.48491 * 109.47207 * 240.00282 * 9 7 5 13 13 N 1.46503 * 109.47272 * 58.72204 * 3 2 1 14 14 S 1.65604 * 120.00039 * 95.98059 * 13 3 2 15 15 O 1.42098 * 106.39753 * 178.38403 * 14 13 3 16 16 O 1.42092 * 106.40301 * 311.30996 * 14 13 3 17 17 C 1.76200 * 107.21502 * 64.84985 * 14 13 3 18 18 C 1.38296 * 120.11427 * 269.71919 * 17 14 13 19 19 C 1.37934 * 120.34708 * 179.59976 * 18 17 14 20 20 C 1.39282 * 120.24361 * 0.51656 * 19 18 17 21 21 C 1.38881 * 118.87415 * 0.06731 * 20 19 18 22 22 C 1.37744 * 120.78682 * 359.50725 * 21 20 19 23 23 C 1.51649 * 107.03963 * 179.04921 * 21 20 19 24 24 C 1.54703 * 101.92824 * 344.66725 * 23 21 20 25 25 C 1.52998 * 110.74841 * 266.95142 * 24 23 21 26 26 C 1.53002 * 110.90681 * 143.67460 * 24 23 21 27 27 O 1.36133 * 129.89115 * 180.31257 * 20 19 18 28 28 H 1.09003 * 109.47137 * 295.29331 * 1 2 3 29 29 H 1.08996 * 109.47361 * 55.30067 * 1 2 3 30 30 H 1.09003 * 109.46947 * 175.29885 * 1 2 3 31 31 H 1.08999 * 109.46782 * 240.00193 * 2 1 3 32 32 H 1.08998 * 109.47001 * 120.00158 * 2 1 3 33 33 H 0.96997 * 120.00252 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99931 * 275.71697 * 13 3 2 35 35 H 1.08000 * 119.82390 * 359.86034 * 18 17 14 36 36 H 1.08000 * 119.87607 * 180.28613 * 19 18 17 37 37 H 1.08001 * 120.01274 * 180.36264 * 22 21 20 38 38 H 1.09002 * 110.93651 * 102.82503 * 23 21 20 39 39 H 1.08997 * 110.93727 * 226.50239 * 23 21 20 40 40 H 1.09007 * 109.47362 * 174.82083 * 25 24 23 41 41 H 1.09009 * 109.47294 * 294.81543 * 25 24 23 42 42 H 1.09000 * 109.47422 * 54.81728 * 25 24 23 43 43 H 1.09004 * 109.46810 * 305.08931 * 26 24 23 44 44 H 1.09003 * 109.47520 * 65.08782 * 26 24 23 45 45 H 1.09000 * 109.47261 * 185.09231 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1297 1.4426 0.0230 5 6 1.5637 2.1437 -1.2460 6 1 0.9409 3.0225 -1.1666 7 6 1.9232 1.6634 -2.4874 8 7 2.6820 0.5936 -2.5842 9 14 1.3323 2.5322 -4.0320 10 1 0.4991 3.7019 -3.6539 11 1 2.5038 2.9933 -4.8194 12 1 0.5247 1.5924 -4.8503 13 7 1.5266 2.1420 1.1805 14 16 2.4571 2.2552 2.5457 15 8 1.7041 3.0130 3.4827 16 8 2.9384 0.9453 2.8130 17 6 3.8671 3.2295 2.1364 18 6 5.0150 2.6230 1.6601 19 6 6.1187 3.3818 1.3304 20 6 6.0900 4.7657 1.4847 21 6 4.9357 5.3621 1.9753 22 6 3.8317 4.6033 2.2957 23 6 5.2051 6.8523 2.0557 24 6 6.7461 6.9058 1.9309 25 6 7.4023 6.9024 3.3130 26 6 7.1865 8.1310 1.1271 27 8 7.0501 5.6938 1.2197 28 1 -0.3633 0.4391 0.9292 29 1 -0.3634 0.5850 -0.8448 30 1 -0.3633 -1.0242 -0.0842 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9346 0.2555 -3.4575 34 1 0.6431 2.5420 1.1611 35 1 5.0461 1.5499 1.5417 36 1 7.0097 2.9006 0.9548 37 1 2.9384 5.0807 2.6708 38 1 4.7287 7.3793 1.2290 39 1 4.8775 7.2562 3.0136 40 1 8.4853 6.8477 3.2010 41 1 7.1378 7.8175 3.8431 42 1 7.0516 6.0399 3.8796 43 1 6.6843 8.1305 0.1597 44 1 6.9234 9.0373 1.6726 45 1 8.2655 8.0979 0.9763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273944608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:18 Heat of formation + Delta-G solvation = -93.084232 kcal Electronic energy + Delta-G solvation = -28305.416328 eV Core-core repulsion = 24414.930228 eV Total energy + Delta-G solvation = -3890.486101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45825 -37.69863 -36.73008 -35.93515 -35.26964 -34.06621 -32.19534 -31.66775 -30.34032 -30.19409 -27.79287 -26.76382 -26.34647 -23.54815 -22.97059 -21.91772 -20.86523 -20.02805 -18.77263 -17.39746 -17.33271 -16.98746 -16.32886 -16.06097 -15.75846 -15.16149 -14.71568 -14.38931 -14.20829 -13.99449 -13.56927 -13.39874 -13.16422 -13.08955 -12.87990 -12.84629 -12.63856 -12.47000 -12.31806 -12.20008 -12.01727 -11.68808 -11.54167 -11.46132 -11.34415 -11.07966 -11.02731 -10.88172 -10.78801 -10.63388 -10.49379 -10.34735 -10.00090 -9.66281 -9.13362 -8.86623 -8.60842 -8.39304 -8.21210 -6.13191 -4.20032 0.90079 1.18145 1.37987 2.98139 3.22620 3.31544 3.33834 3.46317 3.83416 4.19206 4.24417 4.34614 4.36633 4.50098 4.68542 4.82095 4.99120 5.09989 5.18754 5.19746 5.28871 5.34329 5.38918 5.45034 5.50714 5.62758 5.70790 5.74685 5.87371 6.00085 6.10380 6.26624 6.29495 6.31690 6.43227 6.56301 6.59584 6.66243 7.05364 7.12050 7.29392 7.46231 7.53231 7.68378 7.83254 8.05417 8.28502 8.82205 9.45296 10.92073 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011568 B = 0.004253 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.960317 B = 6581.845008 C = 8062.895024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 C 0.279 3.721 4 H 0.041 0.959 5 C -0.518 4.518 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 N -1.098 6.098 14 S 2.693 3.307 15 O -0.985 6.985 16 O -0.963 6.963 17 C -0.693 4.693 18 C 0.025 3.975 19 C -0.158 4.158 20 C 0.156 3.844 21 C -0.201 4.201 22 C 0.031 3.969 23 C -0.098 4.098 24 C 0.098 3.902 25 C -0.163 4.163 26 C -0.141 4.141 27 O -0.294 6.294 28 H 0.030 0.970 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.099 0.901 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.409 0.591 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 11.570 8.556 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.176 4.176 3 C 0.175 3.825 4 H 0.059 0.941 5 C -0.558 4.558 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.859 5.859 14 S 2.782 3.218 15 O -0.975 6.975 16 O -0.953 6.953 17 C -0.779 4.779 18 C 0.006 3.994 19 C -0.178 4.178 20 C 0.110 3.890 21 C -0.203 4.203 22 C 0.012 3.988 23 C -0.135 4.135 24 C 0.061 3.939 25 C -0.220 4.220 26 C -0.198 4.198 27 O -0.208 6.208 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.118 0.882 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.243 0.757 35 H 0.168 0.832 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.481 11.011 9.093 16.122 hybrid contribution -0.214 1.090 -1.490 1.859 sum 7.267 12.102 7.603 16.033 Atomic orbital electron populations 1.21568 0.97803 0.98801 1.00616 1.21967 0.94956 0.98932 1.01723 1.18573 0.93882 0.88745 0.81337 0.94110 1.21254 1.32472 1.12197 0.89876 0.91819 1.24866 0.94914 0.94923 0.98922 1.69863 1.35779 1.22268 1.24383 0.86498 0.78567 0.79633 0.83060 1.19772 1.21047 1.20900 1.55525 1.28303 1.70319 1.31722 1.01726 0.73267 0.73768 0.73055 1.93509 1.70200 1.73047 1.60732 1.93560 1.81660 1.36274 1.83823 1.31047 1.19679 1.07561 1.19618 1.20719 0.89785 1.00447 0.88469 1.20344 1.00882 0.89351 1.07195 1.19756 0.87179 0.90577 0.91515 1.20722 0.95543 0.95379 1.08639 1.19920 0.96725 0.91101 0.91053 1.21872 0.94642 0.92837 1.04187 1.22811 0.94084 0.84526 0.92494 1.22208 1.01691 1.03235 0.94897 1.21841 1.02740 0.94785 1.00457 1.86896 1.46748 1.22172 1.64976 0.95063 0.91942 0.95561 0.88237 0.94905 0.92664 0.75668 0.83229 0.84679 0.84379 0.88836 0.88880 0.91253 0.90539 0.91677 0.91217 0.90236 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.52 37.16 0.35 -2.35 16 2 C -0.14 -3.14 5.69 -26.73 -0.15 -3.29 16 3 C 0.28 6.43 2.46 -69.08 -0.17 6.26 16 4 H 0.04 0.99 7.24 -51.93 -0.38 0.62 16 5 C -0.52 -12.88 7.48 -34.44 -0.26 -13.14 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.88 -23.47 11.31 55.43 0.63 -22.84 16 9 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -1.10 -21.63 4.76 -5.88 -0.03 -21.65 16 14 S 2.69 50.63 5.65 -107.50 -0.61 50.02 16 15 O -0.98 -19.24 17.30 -57.17 -0.99 -20.22 16 16 O -0.96 -20.23 16.67 -57.17 -0.95 -21.18 16 17 C -0.69 -12.17 5.82 -39.52 -0.23 -12.40 16 18 C 0.02 0.43 8.90 -39.67 -0.35 0.07 16 19 C -0.16 -2.50 10.06 -39.30 -0.40 -2.90 16 20 C 0.16 2.42 6.94 -38.96 -0.27 2.14 16 21 C -0.20 -2.97 6.27 -104.10 -0.65 -3.62 16 22 C 0.03 0.50 9.51 -39.72 -0.38 0.12 16 23 C -0.10 -1.07 6.18 -26.52 -0.16 -1.24 16 24 C 0.10 1.02 1.26 -89.72 -0.11 0.91 16 25 C -0.16 -1.41 8.85 37.16 0.33 -1.08 16 26 C -0.14 -1.11 8.96 37.16 0.33 -0.78 16 27 O -0.29 -4.13 10.52 -20.16 -0.21 -4.34 16 28 H 0.03 0.59 7.63 -51.93 -0.40 0.19 16 29 H 0.06 1.35 7.10 -51.93 -0.37 0.98 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 2.52 6.04 -51.93 -0.31 2.20 16 32 H 0.03 0.74 7.76 -51.93 -0.40 0.34 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.41 7.36 8.72 -34.47 -0.30 7.06 16 35 H 0.15 2.47 7.61 -52.49 -0.40 2.07 16 36 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.14 1.97 7.63 -52.49 -0.40 1.57 16 38 H 0.09 0.95 7.91 -51.93 -0.41 0.54 16 39 H 0.09 0.82 7.92 -51.93 -0.41 0.41 16 40 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 42 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 43 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -30.71 376.98 -10.42 -41.13 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.71 Total: 7.94 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: -2.22 Total: -29.68 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.60 Total: -44.49 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -2.15 Total: -45.75 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 50.63 SS G_CDS: -0.61 Total: 50.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.71 -10.42 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273944608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.953 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds