Wall clock time and date at job start Tue Mar 31 2020 22:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46707 * 2 1 4 4 H 1.09000 * 109.46533 * 178.71810 * 3 2 1 5 5 C 1.50702 * 109.47453 * 298.71736 * 3 2 1 6 6 H 1.08002 * 119.99847 * 120.00095 * 5 3 2 7 7 C 1.37872 * 119.99714 * 300.00139 * 5 3 2 8 8 N 1.31513 * 120.00504 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99668 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46860 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47009 * 120.00127 * 9 7 5 12 12 H 1.48491 * 109.47207 * 240.00282 * 9 7 5 13 13 N 1.46503 * 109.47272 * 58.72204 * 3 2 1 14 14 S 1.65604 * 120.00039 * 95.98059 * 13 3 2 15 15 O 1.42098 * 106.39753 * 178.38403 * 14 13 3 16 16 O 1.42092 * 106.40301 * 311.30996 * 14 13 3 17 17 C 1.76200 * 107.21502 * 64.84985 * 14 13 3 18 18 C 1.38296 * 120.11427 * 269.71919 * 17 14 13 19 19 C 1.37934 * 120.34708 * 179.59976 * 18 17 14 20 20 C 1.39282 * 120.24361 * 0.51656 * 19 18 17 21 21 C 1.38881 * 118.87415 * 0.06731 * 20 19 18 22 22 C 1.37744 * 120.78682 * 359.50725 * 21 20 19 23 23 C 1.51649 * 107.03963 * 179.04921 * 21 20 19 24 24 C 1.54703 * 101.92824 * 344.66725 * 23 21 20 25 25 C 1.52998 * 110.74841 * 266.95142 * 24 23 21 26 26 C 1.53002 * 110.90681 * 143.67460 * 24 23 21 27 27 O 1.36133 * 129.89115 * 180.31257 * 20 19 18 28 28 H 1.09003 * 109.47137 * 295.29331 * 1 2 3 29 29 H 1.08996 * 109.47361 * 55.30067 * 1 2 3 30 30 H 1.09003 * 109.46947 * 175.29885 * 1 2 3 31 31 H 1.08999 * 109.46782 * 240.00193 * 2 1 3 32 32 H 1.08998 * 109.47001 * 120.00158 * 2 1 3 33 33 H 0.96997 * 120.00252 * 179.97438 * 8 7 5 34 34 H 0.97001 * 119.99931 * 275.71697 * 13 3 2 35 35 H 1.08000 * 119.82390 * 359.86034 * 18 17 14 36 36 H 1.08000 * 119.87607 * 180.28613 * 19 18 17 37 37 H 1.08001 * 120.01274 * 180.36264 * 22 21 20 38 38 H 1.09002 * 110.93651 * 102.82503 * 23 21 20 39 39 H 1.08997 * 110.93727 * 226.50239 * 23 21 20 40 40 H 1.09007 * 109.47362 * 174.82083 * 25 24 23 41 41 H 1.09009 * 109.47294 * 294.81543 * 25 24 23 42 42 H 1.09000 * 109.47422 * 54.81728 * 25 24 23 43 43 H 1.09004 * 109.46810 * 305.08931 * 26 24 23 44 44 H 1.09003 * 109.47520 * 65.08782 * 26 24 23 45 45 H 1.09000 * 109.47261 * 185.09231 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1297 1.4426 0.0230 5 6 1.5637 2.1437 -1.2460 6 1 0.9409 3.0225 -1.1666 7 6 1.9232 1.6634 -2.4874 8 7 2.6820 0.5936 -2.5842 9 14 1.3323 2.5322 -4.0320 10 1 0.4991 3.7019 -3.6539 11 1 2.5038 2.9933 -4.8194 12 1 0.5247 1.5924 -4.8503 13 7 1.5266 2.1420 1.1805 14 16 2.4571 2.2552 2.5457 15 8 1.7041 3.0130 3.4827 16 8 2.9384 0.9453 2.8130 17 6 3.8671 3.2295 2.1364 18 6 5.0150 2.6230 1.6601 19 6 6.1187 3.3818 1.3304 20 6 6.0900 4.7657 1.4847 21 6 4.9357 5.3621 1.9753 22 6 3.8317 4.6033 2.2957 23 6 5.2051 6.8523 2.0557 24 6 6.7461 6.9058 1.9309 25 6 7.4023 6.9024 3.3130 26 6 7.1865 8.1310 1.1271 27 8 7.0501 5.6938 1.2197 28 1 -0.3633 0.4391 0.9292 29 1 -0.3634 0.5850 -0.8448 30 1 -0.3633 -1.0242 -0.0842 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9346 0.2555 -3.4575 34 1 0.6431 2.5420 1.1611 35 1 5.0461 1.5499 1.5417 36 1 7.0097 2.9006 0.9548 37 1 2.9384 5.0807 2.6708 38 1 4.7287 7.3793 1.2290 39 1 4.8775 7.2562 3.0136 40 1 8.4853 6.8477 3.2010 41 1 7.1378 7.8175 3.8431 42 1 7.0516 6.0399 3.8796 43 1 6.6843 8.1305 0.1597 44 1 6.9234 9.0373 1.6726 45 1 8.2655 8.0979 0.9763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273944608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:17 Heat of formation + Delta-G solvation = -112.455253 kcal Electronic energy + Delta-G solvation = -28306.256319 eV Core-core repulsion = 24414.930228 eV Total energy + Delta-G solvation = -3891.326091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.49527 -38.86172 -38.33883 -37.69066 -36.86599 -34.95917 -34.07921 -32.72794 -32.02641 -31.46466 -28.42488 -28.24692 -27.70891 -25.38240 -24.20169 -23.06315 -21.85991 -21.73273 -20.28391 -19.02360 -18.54358 -18.34300 -17.87728 -17.36168 -16.94870 -16.71496 -16.25813 -15.56949 -15.38401 -15.20919 -14.96388 -14.87013 -14.54944 -14.40016 -14.16312 -14.03799 -13.87337 -13.66917 -13.41443 -13.27119 -13.15467 -13.06261 -12.95842 -12.84454 -12.81957 -12.60034 -12.42053 -12.30752 -12.17156 -11.94433 -11.89565 -11.80203 -11.77343 -11.47526 -10.97594 -10.52310 -10.11233 -9.97375 -9.55202 -8.07953 -6.19753 -0.50653 -0.19799 0.15553 1.43799 1.47899 1.56510 1.95236 2.15910 2.37202 2.49981 2.85621 3.18756 3.22303 3.37662 3.57416 3.70310 3.78614 3.97111 4.03685 4.12422 4.36938 4.51433 4.52906 4.61570 4.67959 4.71165 4.72250 4.76976 4.82640 4.83707 4.89728 4.92054 4.97306 5.00168 5.12381 5.16044 5.24485 5.27997 5.44819 5.50224 5.62720 5.73865 5.75954 6.00914 6.13227 6.16966 6.47581 6.89500 7.48087 8.96911 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011568 B = 0.004253 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.960317 B = 6581.845008 C = 8062.895024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 C 0.284 3.716 4 H 0.023 0.977 5 C -0.523 4.523 6 H 0.066 0.934 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.282 1.282 13 N -1.097 6.097 14 S 2.711 3.289 15 O -0.990 6.990 16 O -0.990 6.990 17 C -0.707 4.707 18 C 0.007 3.993 19 C -0.170 4.170 20 C 0.152 3.848 21 C -0.203 4.203 22 C 0.021 3.979 23 C -0.097 4.097 24 C 0.089 3.911 25 C -0.161 4.161 26 C -0.138 4.138 27 O -0.307 6.307 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.417 0.583 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 14.267 8.909 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.176 4.176 3 C 0.179 3.821 4 H 0.041 0.959 5 C -0.562 4.562 6 H 0.085 0.915 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.208 1.208 13 N -0.857 5.857 14 S 2.802 3.198 15 O -0.980 6.980 16 O -0.980 6.980 17 C -0.795 4.795 18 C -0.012 4.012 19 C -0.189 4.189 20 C 0.105 3.895 21 C -0.205 4.205 22 C 0.002 3.998 23 C -0.134 4.134 24 C 0.053 3.947 25 C -0.218 4.218 26 C -0.195 4.195 27 O -0.221 6.221 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.253 0.747 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.172 0.828 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.397 13.711 9.464 18.228 hybrid contribution -0.092 0.335 -1.554 1.592 sum 7.304 14.045 7.910 17.697 Atomic orbital electron populations 1.21501 0.95912 0.99816 1.01011 1.21905 0.96691 0.98688 1.00347 1.18306 0.92911 0.88959 0.81969 0.95946 1.21498 1.32040 1.12142 0.90564 0.91547 1.25524 0.95188 0.95515 1.01447 1.69984 1.36848 1.23431 1.24787 0.85626 0.77929 0.78814 0.79961 1.19021 1.21361 1.20820 1.55338 1.29120 1.70402 1.30874 1.00993 0.73139 0.73202 0.72458 1.93491 1.70763 1.73007 1.60776 1.93520 1.82048 1.38204 1.84206 1.30749 1.18967 1.08331 1.21450 1.20771 0.90462 1.00512 0.89475 1.20529 1.01039 0.90098 1.07221 1.19936 0.87983 0.90721 0.90870 1.21149 0.94593 0.97661 1.07056 1.20160 0.97921 0.90549 0.91217 1.22059 0.95115 0.90124 1.06076 1.23245 0.94027 0.83887 0.93584 1.22236 1.01808 1.03974 0.93792 1.21898 1.02904 0.94574 1.00138 1.86898 1.46536 1.23142 1.65503 0.93383 0.92969 0.94042 0.90665 0.95183 0.92794 0.74750 0.83805 0.83250 0.82794 0.87773 0.86256 0.90818 0.87637 0.93322 0.91948 0.87288 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 9.52 71.98 0.69 -4.43 16 2 C -0.14 -6.40 5.69 30.60 0.17 -6.22 16 3 C 0.28 13.29 2.46 44.24 0.11 13.40 16 4 H 0.02 1.14 7.24 -2.39 -0.02 1.13 16 5 C -0.52 -25.99 7.48 25.60 0.19 -25.80 16 6 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -49.15 11.31 21.45 0.24 -48.91 16 9 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 13 N -1.10 -43.28 4.76 -172.52 -0.82 -44.10 16 14 S 2.71 102.74 5.65 -56.49 -0.32 102.42 16 15 O -0.99 -38.11 17.30 -128.00 -2.21 -40.33 16 16 O -0.99 -42.56 16.67 -128.00 -2.13 -44.70 16 17 C -0.71 -25.05 5.82 22.31 0.13 -24.92 16 18 C 0.01 0.25 8.90 22.21 0.20 0.45 16 19 C -0.17 -5.44 10.06 22.45 0.23 -5.21 16 20 C 0.15 4.60 6.94 22.68 0.16 4.76 16 21 C -0.20 -5.70 6.27 -19.52 -0.12 -5.83 16 22 C 0.02 0.65 9.51 22.18 0.21 0.86 16 23 C -0.10 -1.84 6.18 30.73 0.19 -1.65 16 24 C 0.09 1.62 1.26 -10.21 -0.01 1.60 16 25 C -0.16 -2.32 8.85 71.98 0.64 -1.69 16 26 C -0.14 -1.73 8.96 71.98 0.65 -1.09 16 27 O -0.31 -8.20 10.52 -95.06 -1.00 -9.20 16 28 H 0.05 1.76 7.63 -2.39 -0.02 1.75 16 29 H 0.05 2.22 7.10 -2.39 -0.02 2.21 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 3.91 6.04 -2.39 -0.01 3.89 16 32 H 0.03 1.38 7.76 -2.39 -0.02 1.36 16 33 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 34 H 0.42 14.79 8.72 -96.74 -0.84 13.94 16 35 H 0.14 5.08 7.61 -2.91 -0.02 5.06 16 36 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.15 4.16 7.63 -2.91 -0.02 4.14 16 38 H 0.10 1.79 7.91 -2.39 -0.02 1.77 16 39 H 0.12 1.64 7.92 -2.39 -0.02 1.62 16 40 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 43 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 44 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -65.51 376.98 -0.19 -65.71 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.16 Total: 30.02 kcal Atomic # 6 Polarization: -57.99 SS G_CDS: 3.87 Total: -54.12 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -0.58 Total: -93.01 kcal Atomic # 8 Polarization: -88.88 SS G_CDS: -5.35 Total: -94.23 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 102.74 SS G_CDS: -0.32 Total: 102.42 kcal Total: -65.51 -0.19 -65.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273944608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.748 kcal (2) G-P(sol) polarization free energy of solvation -65.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds