Wall clock time and date at job start Tue Mar 31 2020 23:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 108.66064 * 2 1 4 4 C 1.53849 * 108.78261 * 241.71490 * 2 1 3 5 5 C 1.52910 * 115.30262 * 195.22321 * 4 2 1 6 6 N 1.45591 * 109.23557 * 318.39024 * 5 4 2 7 7 C 1.46902 * 111.00128 * 226.09808 * 6 5 4 8 8 C 1.50693 * 109.47136 * 173.77879 * 7 6 5 9 9 C 1.38294 * 119.93102 * 269.72583 * 8 7 6 10 10 C 1.38107 * 120.06880 * 179.72726 * 9 8 7 11 11 C 1.38877 * 119.92966 * 0.54616 * 10 9 8 12 12 O 1.35747 * 120.06910 * 179.75028 * 11 10 9 13 13 C 1.34828 * 116.99970 * 174.44420 * 12 11 10 14 14 H 1.08001 * 120.00027 * 5.05414 * 13 12 11 15 15 C 1.38650 * 120.00118 * 185.05571 * 13 12 11 16 16 N 1.31562 * 120.00179 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00013 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47319 * 89.99923 * 17 15 13 19 19 H 1.48504 * 109.47365 * 210.00344 * 17 15 13 20 20 H 1.48503 * 109.47082 * 329.99549 * 17 15 13 21 21 C 1.38886 * 119.86091 * 359.72780 * 11 10 9 22 22 C 1.38091 * 119.92870 * 359.97438 * 21 11 10 23 23 C 1.47104 * 108.03827 * 104.17937 * 6 5 4 24 24 C 1.45740 * 115.32951 * 266.98811 * 23 6 5 25 25 S 1.80057 * 108.78435 * 118.28706 * 2 1 3 26 26 O 1.42106 * 108.59530 * 92.11016 * 25 2 1 27 27 O 1.42099 * 108.59379 * 321.02680 * 25 2 1 28 28 H 1.08997 * 109.46931 * 301.71590 * 1 2 3 29 29 H 1.08999 * 109.46800 * 61.71363 * 1 2 3 30 30 H 1.09004 * 109.47107 * 181.71550 * 1 2 3 31 31 H 1.08995 * 108.31466 * 73.71697 * 4 2 1 32 32 H 1.08999 * 108.17366 * 316.62722 * 4 2 1 33 33 H 1.09001 * 109.51141 * 198.46271 * 5 4 2 34 34 H 1.08995 * 109.51174 * 78.31686 * 5 4 2 35 35 H 1.09000 * 109.46862 * 293.78415 * 7 6 5 36 36 H 1.09000 * 109.47252 * 53.77683 * 7 6 5 37 37 H 1.07999 * 119.96843 * 0.02562 * 9 8 7 38 38 H 1.08004 * 120.03425 * 180.27339 * 10 9 8 39 39 H 0.97004 * 119.99495 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.03261 * 180.02562 * 21 11 10 41 41 H 1.08004 * 119.96285 * 180.02562 * 22 21 11 42 42 H 1.09002 * 108.31403 * 145.46776 * 23 6 5 43 43 H 1.08999 * 108.31756 * 28.49995 * 23 6 5 44 44 H 1.09005 * 109.43642 * 304.42969 * 24 23 6 45 45 H 1.08995 * 109.41170 * 184.53071 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8787 1.0326 0.0000 4 6 2.0253 -0.6902 -1.2826 5 6 3.4986 -1.0995 -1.2773 6 7 4.2898 -0.0358 -0.6755 7 6 5.4845 0.2516 -1.4806 8 6 6.1949 1.4537 -0.9138 9 6 5.8749 2.7209 -1.3659 10 6 6.5201 3.8251 -0.8445 11 6 7.4992 3.6610 0.1267 12 8 8.1388 4.7439 0.6375 13 6 8.9941 4.5253 1.6566 14 1 9.2066 3.5158 1.9762 15 6 9.6009 5.5965 2.2943 16 7 10.4351 5.3833 3.2890 17 14 9.2329 7.3427 1.7420 18 1 8.0710 7.8681 2.5031 19 1 10.4182 8.2014 1.9928 20 1 8.9169 7.3467 0.2910 21 6 7.8223 2.3866 0.5745 22 6 7.1691 1.2871 0.0536 23 6 4.6594 -0.4567 0.6847 24 6 3.7517 -0.0240 1.7396 25 16 2.1098 -0.8078 1.5011 26 8 2.3027 -2.1888 1.2270 27 8 1.2644 -0.4249 2.5772 28 1 -0.3633 0.5402 0.8742 29 1 -0.3633 0.4870 -0.9050 30 1 -0.3633 -1.0272 0.0308 31 1 1.8610 -0.0135 -2.1211 32 1 1.4221 -1.5839 -1.4425 33 1 3.8335 -1.2678 -2.3009 34 1 3.6200 -2.0152 -0.6987 35 1 6.1529 -0.6091 -1.4589 36 1 5.1888 0.4560 -2.5096 37 1 5.1162 2.8477 -2.1241 38 1 6.2667 4.8148 -1.1948 39 1 10.8599 6.1328 3.7348 40 1 8.5829 2.2558 1.3300 41 1 7.4196 0.2959 0.4017 42 1 5.6527 -0.0662 0.9061 43 1 4.7124 -1.5453 0.7039 44 1 3.6447 1.0602 1.7039 45 1 4.1564 -0.3168 2.7083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277115834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:06 Heat of formation + Delta-G solvation = -55.103169 kcal Electronic energy + Delta-G solvation = -27874.858677 eV Core-core repulsion = 23986.019558 eV Total energy + Delta-G solvation = -3888.839118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.74143 -38.79493 -37.11037 -36.62876 -36.13244 -35.01957 -32.59850 -32.30762 -30.80226 -30.31619 -28.42651 -25.80881 -24.56550 -23.94662 -22.97653 -22.11064 -21.02269 -20.34420 -18.80270 -17.96894 -17.37462 -17.27891 -16.83516 -16.21162 -15.65896 -15.25673 -15.14338 -14.95012 -14.64557 -14.14004 -13.95384 -13.84106 -13.69189 -13.53128 -13.29939 -13.13239 -12.77057 -12.60421 -12.45289 -12.31071 -12.20680 -12.11708 -12.02884 -11.83441 -11.62677 -11.56832 -11.38659 -11.26111 -10.85273 -10.76017 -10.69292 -10.40611 -10.23904 -10.11078 -9.47117 -8.94396 -8.66704 -8.35132 -7.42639 -6.48989 -4.16041 -0.09624 2.01102 2.05804 2.57648 3.16851 3.20913 3.34758 3.46985 3.62593 3.87884 4.17291 4.26375 4.35096 4.43656 4.64394 4.71022 4.76922 4.84846 4.87386 4.96753 5.03185 5.07129 5.22259 5.25799 5.29850 5.42081 5.48764 5.53249 5.58737 5.66522 5.67896 5.71250 5.76919 5.79003 5.85055 6.02389 6.23230 6.46651 6.66235 6.71228 6.80146 6.98529 7.14889 7.19471 7.51639 7.71181 7.95619 8.86010 9.47463 10.58426 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.002797 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.443913 B =10007.648833 C =10424.112794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.561 4.561 3 H 0.143 0.857 4 C -0.075 4.075 5 C 0.012 3.988 6 N -0.526 5.526 7 C 0.112 3.888 8 C -0.177 4.177 9 C -0.054 4.054 10 C -0.194 4.194 11 C 0.162 3.838 12 O -0.216 6.216 13 C -0.391 4.391 14 H 0.106 0.894 15 C 0.064 3.936 16 N -0.877 5.877 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.221 4.221 22 C -0.069 4.069 23 C 0.033 3.967 24 C -0.570 4.570 25 S 2.404 3.596 26 O -0.943 6.943 27 O -0.947 6.947 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.280 0.720 40 H 0.133 0.867 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.140 0.860 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.693 -12.089 -9.534 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.672 4.672 3 H 0.161 0.839 4 C -0.115 4.115 5 C -0.117 4.117 6 N -0.250 5.250 7 C -0.014 4.014 8 C -0.178 4.178 9 C -0.073 4.073 10 C -0.213 4.213 11 C 0.110 3.890 12 O -0.120 6.120 13 C -0.467 4.467 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.515 5.515 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.184 1.184 21 C -0.240 4.240 22 C -0.088 4.088 23 C -0.095 4.095 24 C -0.700 4.700 25 S 2.588 3.412 26 O -0.940 6.940 27 O -0.944 6.944 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.158 0.842 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.259 -11.946 -8.882 22.044 hybrid contribution 0.949 0.767 -0.395 1.282 sum -15.309 -11.180 -9.277 21.105 Atomic orbital electron populations 1.21662 0.90373 1.03296 1.04631 1.29904 1.05679 1.14786 1.16811 0.83859 1.21204 0.95374 1.00197 0.94692 1.22694 0.93355 0.93832 1.01776 1.62483 1.21015 1.39747 1.01804 1.20963 0.89138 0.95179 0.96113 1.19115 1.01721 0.93909 1.03050 1.20451 0.97475 0.91217 0.98119 1.20231 1.00210 0.99009 1.01885 1.19149 0.90602 0.86906 0.92367 1.83574 1.51685 1.30320 1.46448 1.20760 1.20500 0.96828 1.08586 0.87625 1.24477 0.95125 0.99685 0.94665 1.69647 1.27684 1.33207 1.20958 0.86177 0.78043 0.82228 0.80435 1.19821 1.20730 1.18353 1.21241 1.05143 0.91990 1.05661 1.20655 0.95243 0.97426 0.95475 1.20699 1.01110 0.99407 0.88325 1.28842 1.19823 1.14702 1.06676 1.08635 0.78445 0.76919 0.77228 1.93528 1.85704 1.29425 1.85359 1.93565 1.64945 1.84575 1.51350 0.90415 0.90235 0.91785 0.90446 0.90950 0.89989 0.90624 0.94073 0.90049 0.86829 0.86560 0.90958 0.84986 0.87458 0.88088 0.92238 0.84167 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.75 37.16 0.33 -0.74 16 2 C -0.56 -4.66 2.50 -26.29 -0.07 -4.73 16 3 H 0.14 1.09 8.08 -51.73 -0.42 0.67 16 4 C -0.08 -0.57 4.97 -26.34 -0.13 -0.70 16 5 C 0.01 0.10 5.27 -4.58 -0.02 0.08 16 6 N -0.53 -5.24 4.10 -241.39 -0.99 -6.23 16 7 C 0.11 1.20 4.81 -4.98 -0.02 1.18 16 8 C -0.18 -2.52 5.02 -104.58 -0.53 -3.04 16 9 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 10 C -0.19 -3.57 9.99 -39.39 -0.39 -3.96 16 11 C 0.16 3.53 6.65 -39.11 -0.26 3.27 16 12 O -0.22 -5.49 8.59 0.07 0.00 -5.48 16 13 C -0.39 -10.70 9.95 30.88 0.31 -10.39 16 14 H 0.11 2.94 5.44 -52.49 -0.29 2.66 16 15 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 16 N -0.88 -24.83 13.96 55.48 0.77 -24.06 16 17 Si 0.91 21.17 28.62 -169.99 -4.86 16.31 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 21 C -0.22 -4.43 9.17 -39.40 -0.36 -4.79 16 22 C -0.07 -1.11 8.03 -39.61 -0.32 -1.43 16 23 C 0.03 0.35 4.52 -7.14 -0.03 0.31 16 24 C -0.57 -5.63 6.21 33.73 0.21 -5.42 16 25 S 2.40 25.43 4.72 -107.50 -0.51 24.92 16 26 O -0.94 -11.96 15.51 -57.82 -0.90 -12.86 16 27 O -0.95 -13.04 17.30 -57.82 -1.00 -14.04 16 28 H 0.08 0.61 7.73 -51.93 -0.40 0.21 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.50 7.97 -51.93 -0.41 0.08 16 33 H 0.08 0.56 7.46 -51.93 -0.39 0.17 16 34 H 0.08 0.68 5.43 -51.93 -0.28 0.40 16 35 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 36 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 37 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.12 2.02 8.06 -52.48 -0.42 1.59 16 39 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16 41 H 0.11 1.47 7.20 -52.48 -0.38 1.09 16 42 H 0.10 1.17 4.42 -51.93 -0.23 0.94 16 43 H 0.06 0.58 6.39 -51.93 -0.33 0.25 16 44 H 0.14 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -32.46 361.99 -10.15 -42.61 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.35 Total: 3.27 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: -1.77 Total: -29.90 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: -0.21 Total: -30.28 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.90 Total: -32.38 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.86 Total: 16.31 kcal Atomic # 16 Polarization: 25.43 SS G_CDS: -0.51 Total: 24.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.46 -10.15 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277115834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.496 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds