Wall clock time and date at job start Tue Mar 31 2020 23:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 108.66064 * 2 1 4 4 C 1.53849 * 108.78261 * 241.71490 * 2 1 3 5 5 C 1.52910 * 115.30262 * 195.22321 * 4 2 1 6 6 N 1.45591 * 109.23557 * 318.39024 * 5 4 2 7 7 C 1.46902 * 111.00128 * 226.09808 * 6 5 4 8 8 C 1.50693 * 109.47136 * 173.77879 * 7 6 5 9 9 C 1.38294 * 119.93102 * 269.72583 * 8 7 6 10 10 C 1.38107 * 120.06880 * 179.72726 * 9 8 7 11 11 C 1.38877 * 119.92966 * 0.54616 * 10 9 8 12 12 O 1.35747 * 120.06910 * 179.75028 * 11 10 9 13 13 C 1.34828 * 116.99970 * 174.44420 * 12 11 10 14 14 H 1.08001 * 120.00027 * 5.05414 * 13 12 11 15 15 C 1.38650 * 120.00118 * 185.05571 * 13 12 11 16 16 N 1.31562 * 120.00179 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00013 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47319 * 89.99923 * 17 15 13 19 19 H 1.48504 * 109.47365 * 210.00344 * 17 15 13 20 20 H 1.48503 * 109.47082 * 329.99549 * 17 15 13 21 21 C 1.38886 * 119.86091 * 359.72780 * 11 10 9 22 22 C 1.38091 * 119.92870 * 359.97438 * 21 11 10 23 23 C 1.47104 * 108.03827 * 104.17937 * 6 5 4 24 24 C 1.45740 * 115.32951 * 266.98811 * 23 6 5 25 25 S 1.80057 * 108.78435 * 118.28706 * 2 1 3 26 26 O 1.42106 * 108.59530 * 92.11016 * 25 2 1 27 27 O 1.42099 * 108.59379 * 321.02680 * 25 2 1 28 28 H 1.08997 * 109.46931 * 301.71590 * 1 2 3 29 29 H 1.08999 * 109.46800 * 61.71363 * 1 2 3 30 30 H 1.09004 * 109.47107 * 181.71550 * 1 2 3 31 31 H 1.08995 * 108.31466 * 73.71697 * 4 2 1 32 32 H 1.08999 * 108.17366 * 316.62722 * 4 2 1 33 33 H 1.09001 * 109.51141 * 198.46271 * 5 4 2 34 34 H 1.08995 * 109.51174 * 78.31686 * 5 4 2 35 35 H 1.09000 * 109.46862 * 293.78415 * 7 6 5 36 36 H 1.09000 * 109.47252 * 53.77683 * 7 6 5 37 37 H 1.07999 * 119.96843 * 0.02562 * 9 8 7 38 38 H 1.08004 * 120.03425 * 180.27339 * 10 9 8 39 39 H 0.97004 * 119.99495 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.03261 * 180.02562 * 21 11 10 41 41 H 1.08004 * 119.96285 * 180.02562 * 22 21 11 42 42 H 1.09002 * 108.31403 * 145.46776 * 23 6 5 43 43 H 1.08999 * 108.31756 * 28.49995 * 23 6 5 44 44 H 1.09005 * 109.43642 * 304.42969 * 24 23 6 45 45 H 1.08995 * 109.41170 * 184.53071 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8787 1.0326 0.0000 4 6 2.0253 -0.6902 -1.2826 5 6 3.4986 -1.0995 -1.2773 6 7 4.2898 -0.0358 -0.6755 7 6 5.4845 0.2516 -1.4806 8 6 6.1949 1.4537 -0.9138 9 6 5.8749 2.7209 -1.3659 10 6 6.5201 3.8251 -0.8445 11 6 7.4992 3.6610 0.1267 12 8 8.1388 4.7439 0.6375 13 6 8.9941 4.5253 1.6566 14 1 9.2066 3.5158 1.9762 15 6 9.6009 5.5965 2.2943 16 7 10.4351 5.3833 3.2890 17 14 9.2329 7.3427 1.7420 18 1 8.0710 7.8681 2.5031 19 1 10.4182 8.2014 1.9928 20 1 8.9169 7.3467 0.2910 21 6 7.8223 2.3866 0.5745 22 6 7.1691 1.2871 0.0536 23 6 4.6594 -0.4567 0.6847 24 6 3.7517 -0.0240 1.7396 25 16 2.1098 -0.8078 1.5011 26 8 2.3027 -2.1888 1.2270 27 8 1.2644 -0.4249 2.5772 28 1 -0.3633 0.5402 0.8742 29 1 -0.3633 0.4870 -0.9050 30 1 -0.3633 -1.0272 0.0308 31 1 1.8610 -0.0135 -2.1211 32 1 1.4221 -1.5839 -1.4425 33 1 3.8335 -1.2678 -2.3009 34 1 3.6200 -2.0152 -0.6987 35 1 6.1529 -0.6091 -1.4589 36 1 5.1888 0.4560 -2.5096 37 1 5.1162 2.8477 -2.1241 38 1 6.2667 4.8148 -1.1948 39 1 10.8599 6.1328 3.7348 40 1 8.5829 2.2558 1.3300 41 1 7.4196 0.2959 0.4017 42 1 5.6527 -0.0662 0.9061 43 1 4.7124 -1.5453 0.7039 44 1 3.6447 1.0602 1.7039 45 1 4.1564 -0.3168 2.7083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277115834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:05 Heat of formation + Delta-G solvation = -78.028642 kcal Electronic energy + Delta-G solvation = -27875.852800 eV Core-core repulsion = 23986.019558 eV Total energy + Delta-G solvation = -3889.833242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.03927 -39.95511 -38.29231 -37.76916 -37.05392 -35.75584 -34.47540 -33.28928 -31.96049 -31.61700 -29.38427 -27.45986 -25.78635 -24.61970 -23.93889 -23.43479 -22.09784 -21.39149 -19.79868 -19.62258 -19.07787 -18.08726 -17.64511 -17.09412 -16.63472 -16.58143 -16.07512 -16.04198 -15.86015 -15.62328 -15.47718 -15.17327 -14.61620 -14.49346 -14.26938 -14.15601 -14.04229 -13.96270 -13.72223 -13.27949 -13.13120 -13.06664 -13.05095 -12.89546 -12.78074 -12.52800 -12.42988 -12.28328 -12.19650 -11.98343 -11.97564 -11.65454 -11.29114 -11.13567 -10.91034 -10.88666 -9.74802 -9.46020 -8.96773 -8.50607 -6.23013 -0.90597 0.59378 0.64769 1.31230 1.34977 1.51333 1.79609 2.27321 2.62349 2.72521 2.89235 3.06633 3.14114 3.24566 3.62650 3.70580 3.86496 3.96704 4.00216 4.06468 4.16124 4.18294 4.27987 4.36665 4.49575 4.58794 4.61657 4.71544 4.76930 4.81700 4.83671 4.88767 4.93609 5.00466 5.04267 5.12652 5.18051 5.27569 5.28959 5.38902 5.59680 5.76340 5.80912 5.92399 5.97388 6.08404 6.28363 6.84243 7.59839 8.61060 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.002797 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.443913 B =10007.648833 C =10424.112794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.545 4.545 3 H 0.156 0.844 4 C -0.078 4.078 5 C 0.009 3.991 6 N -0.526 5.526 7 C 0.111 3.889 8 C -0.145 4.145 9 C -0.045 4.045 10 C -0.194 4.194 11 C 0.119 3.881 12 O -0.247 6.247 13 C -0.398 4.398 14 H 0.080 0.920 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.971 3.029 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.262 1.262 21 C -0.239 4.239 22 C -0.069 4.069 23 C 0.028 3.972 24 C -0.571 4.571 25 S 2.403 3.597 26 O -0.969 6.969 27 O -0.987 6.987 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.157 0.843 38 H 0.126 0.874 39 H 0.284 0.716 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 -12.803 -13.092 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.658 4.658 3 H 0.173 0.827 4 C -0.117 4.117 5 C -0.119 4.119 6 N -0.250 5.250 7 C -0.015 4.015 8 C -0.146 4.146 9 C -0.063 4.063 10 C -0.213 4.213 11 C 0.070 3.930 12 O -0.155 6.155 13 C -0.474 4.474 14 H 0.098 0.902 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.194 1.194 20 H -0.186 1.186 21 C -0.258 4.258 22 C -0.087 4.087 23 C -0.100 4.100 24 C -0.701 4.701 25 S 2.590 3.410 26 O -0.966 6.966 27 O -0.985 6.985 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.175 0.825 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.149 0.851 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.889 -12.720 -12.441 25.949 hybrid contribution 1.535 0.656 0.508 1.745 sum -17.354 -12.063 -11.932 24.271 Atomic orbital electron populations 1.21776 0.89723 1.03749 1.05443 1.29761 1.06205 1.14874 1.14982 0.82657 1.21296 0.94942 1.01065 0.94421 1.22794 0.93425 0.92820 1.02872 1.62437 1.20525 1.40734 1.01297 1.21079 0.89542 0.93634 0.97267 1.19634 0.99357 0.95486 1.00148 1.20944 0.97156 0.90189 0.98017 1.20566 0.99150 1.00909 1.00702 1.19728 0.92358 0.86778 0.94118 1.83515 1.53119 1.31840 1.47006 1.20684 1.21204 0.96011 1.09497 0.90247 1.25282 0.95165 1.03606 0.94873 1.69736 1.29667 1.34405 1.22776 0.85215 0.78332 0.77529 0.79633 1.19134 1.19355 1.18579 1.21227 1.05551 0.93124 1.05913 1.20937 0.95065 0.97197 0.95527 1.20760 1.00360 0.99945 0.88965 1.28826 1.19362 1.14771 1.07165 1.08518 0.78167 0.76564 0.77739 1.93489 1.86002 1.31265 1.85819 1.93514 1.66045 1.84996 1.53900 0.91218 0.87918 0.91548 0.88337 0.90106 0.87518 0.91416 0.92726 0.87003 0.82502 0.85643 0.90630 0.87947 0.85105 0.89313 0.91528 0.83857 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.75 71.98 0.63 -1.18 16 2 C -0.54 -7.24 2.50 30.88 0.08 -7.16 16 3 H 0.16 1.74 8.08 -2.52 -0.02 1.72 16 4 C -0.08 -0.81 4.97 30.85 0.15 -0.66 16 5 C 0.01 0.10 5.27 86.52 0.46 0.56 16 6 N -0.53 -7.99 4.10 -917.62 -3.76 -11.75 16 7 C 0.11 1.75 4.81 85.55 0.41 2.16 16 8 C -0.15 -3.55 5.02 -19.84 -0.10 -3.65 16 9 C -0.04 -1.16 9.69 22.25 0.22 -0.94 16 10 C -0.19 -6.79 9.99 22.39 0.22 -6.57 16 11 C 0.12 5.30 6.65 22.58 0.15 5.45 16 12 O -0.25 -13.14 8.59 -22.68 -0.19 -13.33 16 13 C -0.40 -23.15 9.95 67.92 0.68 -22.47 16 14 H 0.08 4.85 5.44 -2.91 -0.02 4.84 16 15 C 0.01 0.51 5.49 84.83 0.47 0.98 16 16 N -0.92 -55.08 13.96 21.61 0.30 -54.78 16 17 Si 0.97 45.02 28.62 68.60 1.96 46.99 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 21 C -0.24 -9.89 9.17 22.39 0.21 -9.68 16 22 C -0.07 -2.10 8.03 22.25 0.18 -1.92 16 23 C 0.03 0.52 4.52 84.04 0.38 0.90 16 24 C -0.57 -10.45 6.21 69.76 0.43 -10.01 16 25 S 2.40 47.77 4.72 -56.49 -0.27 47.51 16 26 O -0.97 -23.47 15.51 -127.38 -1.98 -25.44 16 27 O -0.99 -27.11 17.30 -127.38 -2.20 -29.31 16 28 H 0.07 0.98 7.73 -2.39 -0.02 0.96 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.76 7.97 -2.39 -0.02 0.74 16 33 H 0.11 0.79 7.46 -2.39 -0.02 0.77 16 34 H 0.07 0.96 5.43 -2.39 -0.01 0.95 16 35 H 0.05 0.79 8.06 -2.39 -0.02 0.77 16 36 H 0.11 1.23 7.89 -2.39 -0.02 1.22 16 37 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 39 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.10 4.80 5.64 -2.91 -0.02 4.78 16 41 H 0.13 3.34 7.20 -2.91 -0.02 3.32 16 42 H 0.09 1.84 4.42 -2.39 -0.01 1.83 16 43 H 0.07 1.13 6.39 -2.39 -0.02 1.12 16 44 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 45 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -75.51 361.99 -0.58 -76.09 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 1.00 Total: 18.23 kcal Atomic # 6 Polarization: -58.75 SS G_CDS: 4.56 Total: -54.20 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -3.46 Total: -66.53 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -4.37 Total: -68.08 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.96 Total: 46.99 kcal Atomic # 16 Polarization: 47.77 SS G_CDS: -0.27 Total: 47.51 kcal Total: -75.51 -0.58 -76.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277115834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.942 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds