Wall clock time and date at job start Tue Mar 31 2020 22:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46828 * 2 1 4 4 C 1.53009 * 109.46990 * 179.97438 * 3 2 1 5 5 S 1.81397 * 109.47235 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54275 * 68.37271 * 5 4 3 7 7 O 1.42101 * 110.54298 * 291.62373 * 5 4 3 8 8 C 1.76193 * 104.44909 * 179.97438 * 5 4 3 9 9 C 1.38358 * 119.85503 * 269.72729 * 8 5 4 10 10 C 1.37959 * 120.14589 * 179.72319 * 9 8 5 11 11 C 1.39578 * 119.85289 * 0.55128 * 10 9 8 12 12 C 1.47843 * 120.14348 * 179.70243 * 11 10 9 13 13 O 1.21561 * 119.99761 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00396 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00442 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47440 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47099 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00132 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00141 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00487 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99685 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47414 * 89.99544 * 21 19 17 23 23 H 1.48507 * 109.46901 * 209.99746 * 21 19 17 24 24 H 1.48499 * 109.46953 * 329.99275 * 21 19 17 25 25 C 1.39573 * 119.70765 * 359.72069 * 11 10 9 26 26 C 1.37958 * 119.85913 * 0.02562 * 25 11 10 27 27 H 1.09011 * 109.46881 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47298 * 300.00237 * 1 2 3 29 29 H 1.09001 * 109.47370 * 60.00658 * 1 2 3 30 30 H 1.08995 * 109.47298 * 239.99763 * 2 1 3 31 31 H 1.09000 * 109.46886 * 119.99551 * 2 1 3 32 32 H 1.08995 * 109.47375 * 59.99810 * 3 2 1 33 33 H 1.09000 * 109.47020 * 299.99468 * 3 2 1 34 34 H 1.09004 * 109.47149 * 59.99749 * 4 3 2 35 35 H 1.09000 * 109.46805 * 299.99601 * 4 3 2 36 36 H 1.07999 * 119.92665 * 0.02562 * 9 8 5 37 37 H 1.08005 * 120.07283 * 180.24815 * 10 9 8 38 38 H 0.97006 * 120.00016 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.47245 * 300.00441 * 15 14 12 40 40 H 1.09004 * 109.46907 * 59.99987 * 15 14 12 41 41 H 1.08995 * 109.47222 * 300.00429 * 16 15 14 42 42 H 1.09004 * 109.46859 * 60.00230 * 16 15 14 43 43 H 0.96999 * 120.00685 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.06869 * 179.97438 * 25 11 10 45 45 H 1.07990 * 119.93198 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 16 4.1746 3.1528 -0.0001 6 8 3.8779 3.7871 1.2364 7 8 3.8791 3.7856 -1.2376 8 6 5.9298 2.9985 0.0015 9 6 6.6154 2.9448 1.2020 10 6 7.9892 2.8184 1.2103 11 6 8.6885 2.7562 0.0040 12 6 10.1613 2.6273 0.0054 13 8 10.7677 2.5738 -1.0468 14 7 10.8316 2.5691 1.1731 15 6 12.2909 2.4408 1.1745 16 6 12.7978 2.3977 2.6174 17 6 14.2989 2.2651 2.6188 18 1 14.8376 2.2168 1.6839 19 6 14.9848 2.2065 3.8134 20 7 16.2948 2.0903 3.8147 21 14 14.0531 2.2907 5.4303 22 1 13.6834 0.9185 5.8608 23 1 14.9131 2.9193 6.4650 24 1 12.8221 3.1016 5.2506 25 6 7.9912 2.8166 -1.2036 26 6 6.6170 2.9378 -1.1979 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9562 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 6.0735 2.9971 2.1348 37 1 8.5228 2.7725 2.1482 38 1 10.3477 2.6113 2.0128 39 1 12.5754 1.5221 0.6615 40 1 12.7312 3.2952 0.6604 41 1 12.5133 3.3166 3.1300 42 1 12.3575 1.5435 3.1318 43 1 16.7773 2.0487 4.6551 44 1 8.5265 2.7694 -2.1405 45 1 6.0763 2.9850 -2.1316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277311503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:06 Heat of formation + Delta-G solvation = -100.374582 kcal Electronic energy + Delta-G solvation = -25791.565258 eV Core-core repulsion = 21900.763024 eV Total energy + Delta-G solvation = -3890.802234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.32070 -38.48272 -37.51628 -36.46475 -36.26564 -35.23055 -33.03983 -32.00616 -31.46397 -31.08119 -30.02045 -25.78076 -24.92956 -23.93823 -23.06934 -21.86243 -20.95724 -20.61627 -19.41542 -18.46862 -17.47002 -17.02187 -16.77975 -16.67610 -16.09999 -15.53526 -15.24493 -15.18102 -14.77724 -14.61161 -14.22271 -14.13279 -13.97578 -13.89492 -13.69774 -13.42491 -13.10939 -12.98743 -12.66537 -12.48903 -12.38845 -12.32981 -12.17764 -11.87847 -11.68695 -11.54194 -11.36834 -11.29524 -11.26544 -10.85342 -10.49911 -10.43035 -10.04400 -9.77681 -9.73900 -9.47409 -9.39979 -8.77022 -8.65490 -6.16741 -4.17636 -0.45065 0.10868 0.89611 2.37467 2.54175 3.20305 3.26944 3.28066 3.29447 3.32299 3.55910 3.64316 3.92675 4.10917 4.32047 4.33513 4.34076 4.44821 4.55699 4.63634 4.83065 4.86296 4.88196 4.97198 5.07656 5.15846 5.17409 5.18717 5.27642 5.49039 5.49229 5.57050 5.62390 5.65843 5.71237 5.86713 6.01913 6.08341 6.34231 6.44285 6.53077 7.01180 7.12813 7.58174 7.65634 8.26033 8.38213 8.86973 9.42800 10.96131 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.001966 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.105991 B =14237.709999 C =14932.233135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.117 4.117 4 C -0.606 4.606 5 S 2.495 3.505 6 O -0.934 6.934 7 O -0.934 6.934 8 C -0.648 4.648 9 C -0.030 4.030 10 C -0.110 4.110 11 C -0.069 4.069 12 C 0.542 3.458 13 O -0.533 6.533 14 N -0.715 5.715 15 C 0.128 3.872 16 C -0.022 4.022 17 C -0.525 4.525 18 H 0.076 0.924 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.882 3.118 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.266 1.266 25 C -0.084 4.084 26 C -0.032 4.032 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.397 0.603 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.265 0.735 44 H 0.148 0.852 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.620 -3.223 -6.679 33.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.155 4.155 4 C -0.736 4.736 5 S 2.676 3.324 6 O -0.931 6.931 7 O -0.931 6.931 8 C -0.735 4.735 9 C -0.049 4.049 10 C -0.130 4.130 11 C -0.072 4.072 12 C 0.327 3.673 13 O -0.411 6.411 14 N -0.365 5.365 15 C 0.006 3.994 16 C -0.060 4.060 17 C -0.564 4.564 18 H 0.094 0.906 19 C -0.132 4.132 20 N -0.534 5.534 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.104 4.104 26 C -0.050 4.050 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.232 0.768 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.166 0.834 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -32.394 -2.494 -7.299 33.300 hybrid contribution 0.266 -0.652 1.416 1.582 sum -32.128 -3.146 -5.882 32.814 Atomic orbital electron populations 1.21819 0.95280 1.02155 1.02256 1.21484 0.96245 0.94997 1.02847 1.21444 0.89834 1.00207 1.04059 1.30343 1.06697 1.23997 1.12518 1.05523 0.74294 0.77745 0.74875 1.93587 1.83184 1.71893 1.44427 1.93584 1.83205 1.71958 1.44376 1.30695 1.25940 1.17292 0.99563 1.20894 0.94514 0.92674 0.96829 1.21533 0.94512 0.99084 0.97826 1.20558 0.94077 0.98076 0.94515 1.18240 0.86472 0.77927 0.84651 1.90790 1.69360 1.49835 1.31148 1.46315 1.10083 1.72509 1.07622 1.21624 0.75399 1.01825 1.00529 1.19808 0.98158 0.96968 0.91088 1.20887 0.89002 1.51503 0.94962 0.90561 1.24997 0.94773 0.94291 0.99151 1.69895 1.06664 1.49773 1.27107 0.86756 0.80172 0.78616 0.83549 1.20192 1.21185 1.19105 1.21451 0.93749 0.96758 0.98423 1.20946 0.94521 0.92785 0.96789 0.92301 0.92385 0.92391 0.91365 0.91351 0.89998 0.90007 0.84356 0.84335 0.83448 0.84266 0.76847 0.91515 0.91491 0.95893 0.96362 0.92471 0.83446 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 9.91 37.16 0.37 -0.21 16 2 C -0.12 -0.45 5.93 -26.73 -0.16 -0.61 16 3 C -0.12 -0.51 5.22 -26.73 -0.14 -0.65 16 4 C -0.61 -2.40 5.98 37.16 0.22 -2.18 16 5 S 2.49 19.01 5.16 -107.50 -0.55 18.45 16 6 O -0.93 -9.77 17.10 -57.54 -0.98 -10.75 16 7 O -0.93 -9.76 17.11 -57.54 -0.98 -10.74 16 8 C -0.65 -5.69 5.66 -39.49 -0.22 -5.91 16 9 C -0.03 -0.27 9.45 -39.64 -0.37 -0.64 16 10 C -0.11 -1.11 9.54 -39.18 -0.37 -1.48 16 11 C -0.07 -0.86 5.87 -104.97 -0.62 -1.48 16 12 C 0.54 8.63 7.77 -12.33 -0.10 8.54 16 13 O -0.53 -10.36 16.35 5.31 0.09 -10.27 16 14 N -0.72 -11.28 5.51 -61.25 -0.34 -11.61 16 15 C 0.13 2.51 5.61 -4.04 -0.02 2.49 16 16 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 17 C -0.53 -14.40 9.66 -34.44 -0.33 -14.73 16 18 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 21 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 25 C -0.08 -0.94 9.60 -39.19 -0.38 -1.32 16 26 C -0.03 -0.29 9.45 -39.64 -0.37 -0.67 16 27 H 0.06 0.19 8.14 -51.92 -0.42 -0.23 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.14 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.14 0.31 8.14 -51.92 -0.42 -0.11 16 36 H 0.15 0.99 7.55 -52.49 -0.40 0.59 16 37 H 0.14 1.12 6.41 -52.48 -0.34 0.78 16 38 H 0.40 5.08 6.51 -40.82 -0.27 4.81 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 42 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.15 1.61 7.65 -52.48 -0.40 1.21 16 45 H 0.15 1.03 7.56 -52.49 -0.40 0.63 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -36.67 389.01 -10.32 -46.99 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.80 Total: -0.15 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.71 Total: -17.60 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.44 Total: -37.71 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.88 Total: -31.77 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Atomic # 16 Polarization: 19.01 SS G_CDS: -0.55 Total: 18.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.67 -10.32 -46.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277311503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.385 kcal (2) G-P(sol) polarization free energy of solvation -36.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds