Wall clock time and date at job start Tue Mar 31 2020 22:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46828 * 2 1 4 4 C 1.53009 * 109.46990 * 179.97438 * 3 2 1 5 5 S 1.81397 * 109.47235 * 179.97438 * 4 3 2 6 6 O 1.42105 * 110.54275 * 68.37271 * 5 4 3 7 7 O 1.42101 * 110.54298 * 291.62373 * 5 4 3 8 8 C 1.76193 * 104.44909 * 179.97438 * 5 4 3 9 9 C 1.38358 * 119.85503 * 269.72729 * 8 5 4 10 10 C 1.37959 * 120.14589 * 179.72319 * 9 8 5 11 11 C 1.39578 * 119.85289 * 0.55128 * 10 9 8 12 12 C 1.47843 * 120.14348 * 179.70243 * 11 10 9 13 13 O 1.21561 * 119.99761 * 180.02562 * 12 11 10 14 14 N 1.34772 * 120.00396 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00442 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47440 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47099 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00132 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00141 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00487 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99685 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47414 * 89.99544 * 21 19 17 23 23 H 1.48507 * 109.46901 * 209.99746 * 21 19 17 24 24 H 1.48499 * 109.46953 * 329.99275 * 21 19 17 25 25 C 1.39573 * 119.70765 * 359.72069 * 11 10 9 26 26 C 1.37958 * 119.85913 * 0.02562 * 25 11 10 27 27 H 1.09011 * 109.46881 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47298 * 300.00237 * 1 2 3 29 29 H 1.09001 * 109.47370 * 60.00658 * 1 2 3 30 30 H 1.08995 * 109.47298 * 239.99763 * 2 1 3 31 31 H 1.09000 * 109.46886 * 119.99551 * 2 1 3 32 32 H 1.08995 * 109.47375 * 59.99810 * 3 2 1 33 33 H 1.09000 * 109.47020 * 299.99468 * 3 2 1 34 34 H 1.09004 * 109.47149 * 59.99749 * 4 3 2 35 35 H 1.09000 * 109.46805 * 299.99601 * 4 3 2 36 36 H 1.07999 * 119.92665 * 0.02562 * 9 8 5 37 37 H 1.08005 * 120.07283 * 180.24815 * 10 9 8 38 38 H 0.97006 * 120.00016 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.47245 * 300.00441 * 15 14 12 40 40 H 1.09004 * 109.46907 * 59.99987 * 15 14 12 41 41 H 1.08995 * 109.47222 * 300.00429 * 16 15 14 42 42 H 1.09004 * 109.46859 * 60.00230 * 16 15 14 43 43 H 0.96999 * 120.00685 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.06869 * 179.97438 * 25 11 10 45 45 H 1.07990 * 119.93198 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 16 4.1746 3.1528 -0.0001 6 8 3.8779 3.7871 1.2364 7 8 3.8791 3.7856 -1.2376 8 6 5.9298 2.9985 0.0015 9 6 6.6154 2.9448 1.2020 10 6 7.9892 2.8184 1.2103 11 6 8.6885 2.7562 0.0040 12 6 10.1613 2.6273 0.0054 13 8 10.7677 2.5738 -1.0468 14 7 10.8316 2.5691 1.1731 15 6 12.2909 2.4408 1.1745 16 6 12.7978 2.3977 2.6174 17 6 14.2989 2.2651 2.6188 18 1 14.8376 2.2168 1.6839 19 6 14.9848 2.2065 3.8134 20 7 16.2948 2.0903 3.8147 21 14 14.0531 2.2907 5.4303 22 1 13.6834 0.9185 5.8608 23 1 14.9131 2.9193 6.4650 24 1 12.8221 3.1016 5.2506 25 6 7.9912 2.8166 -1.2036 26 6 6.6170 2.9378 -1.1979 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9562 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 6.0735 2.9971 2.1348 37 1 8.5228 2.7725 2.1482 38 1 10.3477 2.6113 2.0128 39 1 12.5754 1.5221 0.6615 40 1 12.7312 3.2952 0.6604 41 1 12.5133 3.3166 3.1300 42 1 12.3575 1.5435 3.1318 43 1 16.7773 2.0487 4.6551 44 1 8.5265 2.7694 -2.1405 45 1 6.0763 2.9850 -2.1316 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277311503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:05 Heat of formation + Delta-G solvation = -126.763027 kcal Electronic energy + Delta-G solvation = -25792.709547 eV Core-core repulsion = 21900.763024 eV Total energy + Delta-G solvation = -3891.946523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39624 -39.51058 -38.20095 -37.05617 -36.79219 -36.64457 -34.90957 -33.15148 -32.25970 -31.60955 -31.36827 -27.29746 -25.52380 -24.90216 -23.89437 -22.68726 -22.18488 -21.76295 -20.06157 -19.35049 -19.02730 -18.36236 -17.45165 -17.24343 -16.96772 -16.65120 -16.33262 -16.17253 -16.03089 -15.59588 -15.30486 -15.14188 -14.85723 -14.70942 -14.55908 -14.26783 -14.09342 -13.93791 -13.76160 -13.38558 -13.19622 -13.09115 -13.07131 -12.65226 -12.43864 -12.40405 -12.25569 -12.21992 -12.19208 -12.02169 -11.77717 -11.54854 -11.50385 -11.34853 -11.12728 -10.79995 -10.59850 -10.21506 -10.15272 -8.30952 -6.38825 -1.03351 -0.70488 0.15111 1.38697 1.41683 1.48028 1.52522 1.82558 2.02620 2.36038 2.47428 2.89951 3.04150 3.09359 3.49411 3.58361 3.61644 3.77917 3.85270 4.06773 4.14227 4.20447 4.28303 4.37470 4.37525 4.45198 4.58186 4.62252 4.70350 4.76634 4.80700 4.87362 4.88472 4.93315 5.01516 5.03853 5.11519 5.25520 5.32740 5.33339 5.36792 5.47315 5.58706 5.60730 6.19628 6.41902 6.68924 7.04339 7.25886 8.85675 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.001966 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.105991 B =14237.709999 C =14932.233135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.117 4.117 3 C -0.129 4.129 4 C -0.580 4.580 5 S 2.500 3.500 6 O -0.965 6.965 7 O -0.968 6.968 8 C -0.642 4.642 9 C -0.032 4.032 10 C -0.105 4.105 11 C -0.091 4.091 12 C 0.543 3.457 13 O -0.578 6.578 14 N -0.705 5.705 15 C 0.142 3.858 16 C -0.014 4.014 17 C -0.541 4.541 18 H 0.029 0.971 19 C 0.004 3.996 20 N -0.950 5.950 21 Si 0.959 3.041 22 H -0.263 1.263 23 H -0.288 1.288 24 H -0.235 1.235 25 C -0.094 4.094 26 C -0.033 4.033 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.161 0.839 38 H 0.415 0.585 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.268 0.732 44 H 0.141 0.859 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.343 -4.001 -4.768 36.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.156 4.156 3 C -0.168 4.168 4 C -0.714 4.714 5 S 2.684 3.316 6 O -0.962 6.962 7 O -0.965 6.965 8 C -0.727 4.727 9 C -0.050 4.050 10 C -0.124 4.124 11 C -0.094 4.094 12 C 0.331 3.669 13 O -0.459 6.459 14 N -0.357 5.357 15 C 0.019 3.981 16 C -0.051 4.051 17 C -0.580 4.580 18 H 0.047 0.953 19 C -0.193 4.193 20 N -0.590 5.590 21 Si 0.781 3.219 22 H -0.188 1.188 23 H -0.214 1.214 24 H -0.158 1.158 25 C -0.114 4.114 26 C -0.051 4.051 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.191 0.809 37 H 0.179 0.821 38 H 0.253 0.747 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.158 0.842 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -36.134 -3.227 -5.387 36.676 hybrid contribution 1.355 -0.455 0.711 1.596 sum -34.779 -3.683 -4.676 35.285 Atomic orbital electron populations 1.21861 0.95492 1.02365 1.02244 1.21506 0.96126 0.94472 1.03512 1.21606 0.89935 1.00831 1.04441 1.30178 1.06328 1.19663 1.15192 1.05368 0.73411 0.79356 0.73459 1.93546 1.83199 1.74159 1.45294 1.93542 1.83268 1.74292 1.45409 1.30971 1.26776 1.15578 0.99423 1.21241 0.94121 0.91762 0.97916 1.21758 0.95114 0.97984 0.97578 1.20286 0.91617 1.01348 0.96170 1.18769 0.88010 0.76394 0.83710 1.90764 1.70678 1.51794 1.32645 1.46009 1.08334 1.72574 1.08775 1.21140 0.77844 1.00271 0.98858 1.19668 0.94523 0.98287 0.92654 1.21238 0.92027 1.51295 0.93396 0.95301 1.26088 0.95682 0.93633 1.03897 1.70072 1.08992 1.51473 1.28427 0.85548 0.79494 0.79632 0.77264 1.18823 1.21417 1.15806 1.21512 0.94694 0.97221 0.97949 1.21151 0.93671 0.92271 0.98056 0.91998 0.92433 0.92469 0.90745 0.90661 0.89777 0.89889 0.81909 0.81683 0.80905 0.82147 0.74734 0.93180 0.93437 0.94344 0.94274 0.92324 0.84150 0.81512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.91 71.98 0.71 -0.15 16 2 C -0.12 -0.54 5.93 30.59 0.18 -0.36 16 3 C -0.13 -0.74 5.22 30.60 0.16 -0.58 16 4 C -0.58 -2.36 5.98 71.99 0.43 -1.93 16 5 S 2.50 32.06 5.16 -56.49 -0.29 31.77 16 6 O -0.96 -18.12 17.10 -127.65 -2.18 -20.31 16 7 O -0.97 -18.77 17.11 -127.65 -2.18 -20.95 16 8 C -0.64 -9.59 5.66 22.33 0.13 -9.47 16 9 C -0.03 -0.46 9.45 22.23 0.21 -0.25 16 10 C -0.11 -1.82 9.54 22.53 0.21 -1.60 16 11 C -0.09 -2.17 5.87 -20.09 -0.12 -2.28 16 12 C 0.54 17.24 7.77 86.79 0.67 17.92 16 13 O -0.58 -23.20 16.35 -3.91 -0.06 -23.26 16 14 N -0.71 -21.47 5.51 -465.97 -2.57 -24.04 16 15 C 0.14 5.64 5.61 86.38 0.48 6.12 16 16 C -0.01 -0.58 4.16 29.85 0.12 -0.46 16 17 C -0.54 -30.36 9.66 25.60 0.25 -30.12 16 18 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 19 C 0.00 0.24 5.47 84.65 0.46 0.70 16 20 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 21 Si 0.96 41.27 27.47 68.60 1.88 43.16 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 25 C -0.09 -2.04 9.60 22.53 0.22 -1.83 16 26 C -0.03 -0.55 9.45 22.23 0.21 -0.34 16 27 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.17 -0.09 8.14 -2.39 -0.02 -0.10 16 36 H 0.17 1.62 7.55 -2.91 -0.02 1.60 16 37 H 0.16 1.97 6.41 -2.91 -0.02 1.95 16 38 H 0.41 9.46 6.51 -92.70 -0.60 8.86 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 42 H 0.04 1.54 7.57 -2.38 -0.02 1.52 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 44 H 0.14 3.15 7.65 -2.91 -0.02 3.13 16 45 H 0.17 2.03 7.56 -2.92 -0.02 2.01 16 Total: -1.00 -83.01 389.01 -0.43 -83.44 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.33 Total: 13.10 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.34 Total: -24.62 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.27 Total: -82.33 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -4.43 Total: -64.52 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.88 Total: 43.16 kcal Atomic # 16 Polarization: 32.06 SS G_CDS: -0.29 Total: 31.77 kcal Total: -83.01 -0.43 -83.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277311503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.324 kcal (2) G-P(sol) polarization free energy of solvation -83.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds