Wall clock time and date at job start Tue Mar 31 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47580 * 2 1 4 4 C 1.52994 * 109.47252 * 179.97438 * 3 2 1 5 5 S 1.81402 * 109.47030 * 180.02562 * 4 3 2 6 6 O 1.42101 * 110.54452 * 68.38286 * 5 4 3 7 7 O 1.42098 * 110.54379 * 291.62746 * 5 4 3 8 8 C 1.76207 * 104.44829 * 180.02562 * 5 4 3 9 9 C 1.38373 * 119.84667 * 269.72467 * 8 5 4 10 10 C 1.37945 * 120.14787 * 179.72266 * 9 8 5 11 11 C 1.39644 * 119.84604 * 0.57716 * 10 9 8 12 12 C 1.47720 * 120.15143 * 179.68436 * 11 10 9 13 13 O 1.21593 * 120.00337 * 144.26831 * 12 11 10 14 14 N 1.34783 * 119.99713 * 324.26469 * 12 11 10 15 15 C 1.36871 * 119.99762 * 186.58925 * 14 12 11 16 16 H 1.07994 * 120.00341 * 345.99238 * 15 14 12 17 17 C 1.39048 * 120.00028 * 166.00003 * 15 14 12 18 18 N 1.31369 * 119.99597 * 35.18269 * 17 15 14 19 19 Si 1.86796 * 120.00410 * 215.18109 * 17 15 14 20 20 H 1.48497 * 109.47010 * 59.99739 * 19 17 15 21 21 H 1.48500 * 109.47483 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47087 * 300.00085 * 19 17 15 23 23 C 1.46498 * 119.99804 * 6.58139 * 14 12 11 24 24 C 1.53001 * 109.46772 * 99.52625 * 23 14 12 25 25 C 1.39650 * 119.69821 * 359.69648 * 11 10 9 26 26 C 1.37938 * 119.84619 * 0.02562 * 25 11 10 27 27 H 1.09003 * 109.47321 * 59.99043 * 1 2 3 28 28 H 1.08996 * 109.47616 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46855 * 299.99988 * 1 2 3 30 30 H 1.09001 * 109.46855 * 240.00012 * 2 1 3 31 31 H 1.09004 * 109.46905 * 120.00615 * 2 1 3 32 32 H 1.09001 * 109.46534 * 60.00331 * 3 2 1 33 33 H 1.08996 * 109.47234 * 300.00843 * 3 2 1 34 34 H 1.09001 * 109.46929 * 60.00759 * 4 3 2 35 35 H 1.08996 * 109.47426 * 300.00316 * 4 3 2 36 36 H 1.07994 * 119.92768 * 0.02562 * 9 8 5 37 37 H 1.08001 * 120.07715 * 180.25870 * 10 9 8 38 38 H 0.97004 * 119.99475 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.47100 * 219.52332 * 23 14 12 40 40 H 1.08999 * 109.47279 * 339.52265 * 23 14 12 41 41 H 1.09004 * 109.47023 * 315.30940 * 24 23 14 42 42 H 1.09000 * 109.47383 * 75.31228 * 24 23 14 43 43 H 1.09003 * 109.46610 * 195.31056 * 24 23 14 44 44 H 1.07997 * 120.07401 * 179.97438 * 25 11 10 45 45 H 1.07999 * 119.91872 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 16 4.1747 3.1526 0.0014 6 8 3.8783 3.7858 1.2385 7 8 3.8791 3.7866 -1.2355 8 6 5.9300 2.9983 0.0013 9 6 6.6165 2.9431 1.2015 10 6 7.9902 2.8166 1.2087 11 6 8.6889 2.7562 0.0012 12 6 10.1605 2.6278 0.0010 13 8 10.7127 1.9627 -0.8541 14 7 10.8911 3.2478 0.9489 15 6 12.2577 3.2416 0.8726 16 1 12.7578 2.5635 0.1971 17 6 13.0021 4.1085 1.6648 18 7 12.5935 4.4043 2.8778 19 14 14.5832 4.8525 1.0045 20 1 14.2852 5.6468 -0.2142 21 1 15.1839 5.7351 2.0367 22 1 15.5379 3.7664 0.6663 23 6 10.2225 3.9284 2.0606 24 6 10.2389 3.0251 3.2954 25 6 7.9901 2.8182 -1.2064 26 6 6.6160 2.9389 -1.1989 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9336 0.9285 -0.8892 35 1 3.9330 0.9286 0.8908 36 1 6.0753 2.9944 2.1346 37 1 8.5244 2.7695 2.1461 38 1 13.1127 5.0094 3.4304 39 1 10.7448 4.8587 2.2840 40 1 9.1911 4.1480 1.7847 41 1 9.9684 2.0095 3.0063 42 1 11.2376 3.0247 3.7321 43 1 9.5223 3.3976 4.0275 44 1 8.5244 2.7724 -2.1438 45 1 6.0745 2.9873 -2.1321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277475484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:10 Heat of formation + Delta-G solvation = -57.473685 kcal Electronic energy + Delta-G solvation = -27255.836833 eV Core-core repulsion = 23366.894921 eV Total energy + Delta-G solvation = -3888.941912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.78299 -37.68043 -37.11526 -36.19192 -35.91040 -35.37327 -32.55428 -30.99593 -30.81861 -30.78187 -29.58509 -25.73252 -24.70574 -23.42152 -22.56979 -22.20988 -21.60118 -19.67916 -19.00390 -17.69951 -17.07623 -16.67029 -16.43010 -16.30505 -15.57131 -15.12620 -14.70133 -14.66092 -14.40195 -14.24571 -13.87606 -13.71217 -13.64647 -13.27968 -13.17626 -12.76945 -12.59346 -12.25111 -12.11197 -12.10293 -12.00892 -11.93662 -11.90717 -11.66749 -11.49965 -11.25906 -11.06213 -11.03805 -10.86633 -10.75258 -10.56047 -10.43021 -10.35566 -10.09877 -8.99909 -8.89624 -8.73157 -8.49613 -8.10474 -6.75857 -3.91799 -0.00678 0.83432 1.55968 2.85363 3.01834 3.13599 3.17089 3.35227 3.79186 3.90203 4.02983 4.15571 4.23837 4.44965 4.55209 4.56015 4.79458 4.81362 5.03822 5.04621 5.06629 5.12891 5.25511 5.37117 5.37820 5.51019 5.55221 5.64347 5.66149 5.76519 5.88353 5.88904 6.01175 6.13975 6.29118 6.31158 6.37009 6.44200 6.57067 6.70956 7.04692 7.07806 7.24205 7.53975 7.88187 8.25110 8.92895 9.14856 9.77912 10.23244 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002500 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.515694 B =11197.309921 C =11418.269612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.116 4.116 4 C -0.609 4.609 5 S 2.499 3.501 6 O -0.940 6.940 7 O -0.941 6.941 8 C -0.670 4.670 9 C -0.033 4.033 10 C -0.145 4.145 11 C -0.030 4.030 12 C 0.447 3.553 13 O -0.592 6.592 14 N -0.412 5.412 15 C -0.313 4.313 16 H 0.112 0.888 17 C 0.046 3.954 18 N -0.830 5.830 19 Si 0.914 3.086 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.084 3.916 24 C -0.158 4.158 25 C -0.106 4.106 26 C -0.032 4.032 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.275 0.725 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.101 0.899 43 H 0.041 0.959 44 H 0.136 0.864 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.605 -4.561 -0.466 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.154 4.154 4 C -0.738 4.738 5 S 2.681 3.319 6 O -0.937 6.937 7 O -0.938 6.938 8 C -0.759 4.759 9 C -0.052 4.052 10 C -0.164 4.164 11 C -0.034 4.034 12 C 0.237 3.763 13 O -0.480 6.480 14 N -0.126 5.126 15 C -0.440 4.440 16 H 0.130 0.870 17 C -0.162 4.162 18 N -0.466 5.466 19 Si 0.739 3.261 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.039 4.039 24 C -0.215 4.215 25 C -0.126 4.126 26 C -0.051 4.051 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.119 0.881 43 H 0.060 0.940 44 H 0.154 0.846 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.666 -3.971 -0.642 19.095 hybrid contribution 1.469 -0.268 -0.066 1.494 sum -17.197 -4.240 -0.708 17.726 Atomic orbital electron populations 1.21816 0.95447 1.01989 1.02187 1.21485 0.96061 0.95251 1.02793 1.21420 0.90247 0.99924 1.03857 1.30366 1.06259 1.24856 1.12347 1.05218 0.74643 0.77415 0.74632 1.93557 1.83726 1.71953 1.44513 1.93553 1.83768 1.71948 1.44579 1.30253 1.24593 1.21400 0.99690 1.20808 0.94629 0.93512 0.96232 1.22327 0.94254 1.00286 0.99576 1.20681 0.95409 0.93605 0.93715 1.17676 0.85328 0.87589 0.85661 1.90620 1.71715 1.44652 1.41014 1.43830 1.06386 1.43647 1.18750 1.19694 0.80280 1.20325 1.23652 0.87044 1.25386 1.00273 0.96538 0.93981 1.70127 1.40024 1.31384 1.05031 0.86192 0.80966 0.79610 0.79337 1.19557 1.20788 1.19409 1.22339 0.95972 0.98953 0.86601 1.22202 1.04579 0.97385 0.97369 1.21277 0.93513 0.99679 0.98177 1.20759 0.94559 0.93565 0.96227 0.92454 0.92423 0.92437 0.91423 0.91407 0.90150 0.90163 0.84529 0.84516 0.84379 0.82486 0.91422 0.88030 0.92108 0.94651 0.88060 0.93973 0.84598 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.91 37.15 0.37 -0.51 16 2 C -0.12 -0.73 5.93 -26.73 -0.16 -0.89 16 3 C -0.12 -0.83 5.22 -26.74 -0.14 -0.97 16 4 C -0.61 -4.59 5.98 37.15 0.22 -4.37 16 5 S 2.50 28.96 5.16 -107.50 -0.55 28.41 16 6 O -0.94 -13.33 17.11 -57.54 -0.98 -14.31 16 7 O -0.94 -13.33 17.11 -57.54 -0.98 -14.32 16 8 C -0.67 -9.39 5.67 -39.48 -0.22 -9.61 16 9 C -0.03 -0.48 9.45 -39.64 -0.37 -0.86 16 10 C -0.14 -2.53 7.39 -39.16 -0.29 -2.82 16 11 C -0.03 -0.60 5.44 -104.97 -0.57 -1.17 16 12 C 0.45 10.99 7.34 -12.38 -0.09 10.90 16 13 O -0.59 -16.48 16.46 5.28 0.09 -16.39 16 14 N -0.41 -10.17 2.64 -115.93 -0.31 -10.48 16 15 C -0.31 -8.25 9.24 -15.00 -0.14 -8.38 16 16 H 0.11 3.13 7.42 -52.49 -0.39 2.74 16 17 C 0.05 1.12 5.04 -17.45 -0.09 1.03 16 18 N -0.83 -19.53 8.42 55.50 0.47 -19.06 16 19 Si 0.91 19.24 29.67 -169.99 -5.04 14.20 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C 0.08 1.80 4.88 -4.04 -0.02 1.78 16 24 C -0.16 -3.08 8.37 37.16 0.31 -2.77 16 25 C -0.11 -1.89 9.62 -39.16 -0.38 -2.27 16 26 C -0.03 -0.47 9.45 -39.64 -0.37 -0.85 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.14 0.82 8.14 -51.92 -0.42 0.39 16 35 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.14 1.69 7.55 -52.49 -0.40 1.29 16 37 H 0.16 2.69 3.32 -52.49 -0.17 2.51 16 38 H 0.28 6.08 8.31 -40.82 -0.34 5.74 16 39 H 0.10 2.32 5.84 -51.93 -0.30 2.02 16 40 H 0.06 1.18 4.30 -51.93 -0.22 0.96 16 41 H 0.03 0.68 7.41 -51.93 -0.38 0.30 16 42 H 0.10 2.22 6.07 -51.93 -0.32 1.90 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.14 2.37 8.01 -52.49 -0.42 1.95 16 45 H 0.14 1.68 7.56 -52.49 -0.40 1.28 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -32.61 374.02 -9.99 -42.60 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.37 Total: 5.46 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -1.94 Total: -21.75 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: 0.16 Total: -29.54 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.88 Total: -45.02 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.04 Total: 14.20 kcal Atomic # 16 Polarization: 28.96 SS G_CDS: -0.55 Total: 28.41 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.61 -9.99 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277475484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.869 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds