Wall clock time and date at job start Tue Mar 31 2020 22:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47580 * 2 1 4 4 C 1.52994 * 109.47252 * 179.97438 * 3 2 1 5 5 S 1.81402 * 109.47030 * 180.02562 * 4 3 2 6 6 O 1.42101 * 110.54452 * 68.38286 * 5 4 3 7 7 O 1.42098 * 110.54379 * 291.62746 * 5 4 3 8 8 C 1.76207 * 104.44829 * 180.02562 * 5 4 3 9 9 C 1.38373 * 119.84667 * 269.72467 * 8 5 4 10 10 C 1.37945 * 120.14787 * 179.72266 * 9 8 5 11 11 C 1.39644 * 119.84604 * 0.57716 * 10 9 8 12 12 C 1.47720 * 120.15143 * 179.68436 * 11 10 9 13 13 O 1.21593 * 120.00337 * 144.26831 * 12 11 10 14 14 N 1.34783 * 119.99713 * 324.26469 * 12 11 10 15 15 C 1.36871 * 119.99762 * 186.58925 * 14 12 11 16 16 H 1.07994 * 120.00341 * 345.99238 * 15 14 12 17 17 C 1.39048 * 120.00028 * 166.00003 * 15 14 12 18 18 N 1.31369 * 119.99597 * 35.18269 * 17 15 14 19 19 Si 1.86796 * 120.00410 * 215.18109 * 17 15 14 20 20 H 1.48497 * 109.47010 * 59.99739 * 19 17 15 21 21 H 1.48500 * 109.47483 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47087 * 300.00085 * 19 17 15 23 23 C 1.46498 * 119.99804 * 6.58139 * 14 12 11 24 24 C 1.53001 * 109.46772 * 99.52625 * 23 14 12 25 25 C 1.39650 * 119.69821 * 359.69648 * 11 10 9 26 26 C 1.37938 * 119.84619 * 0.02562 * 25 11 10 27 27 H 1.09003 * 109.47321 * 59.99043 * 1 2 3 28 28 H 1.08996 * 109.47616 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46855 * 299.99988 * 1 2 3 30 30 H 1.09001 * 109.46855 * 240.00012 * 2 1 3 31 31 H 1.09004 * 109.46905 * 120.00615 * 2 1 3 32 32 H 1.09001 * 109.46534 * 60.00331 * 3 2 1 33 33 H 1.08996 * 109.47234 * 300.00843 * 3 2 1 34 34 H 1.09001 * 109.46929 * 60.00759 * 4 3 2 35 35 H 1.08996 * 109.47426 * 300.00316 * 4 3 2 36 36 H 1.07994 * 119.92768 * 0.02562 * 9 8 5 37 37 H 1.08001 * 120.07715 * 180.25870 * 10 9 8 38 38 H 0.97004 * 119.99475 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.47100 * 219.52332 * 23 14 12 40 40 H 1.08999 * 109.47279 * 339.52265 * 23 14 12 41 41 H 1.09004 * 109.47023 * 315.30940 * 24 23 14 42 42 H 1.09000 * 109.47383 * 75.31228 * 24 23 14 43 43 H 1.09003 * 109.46610 * 195.31056 * 24 23 14 44 44 H 1.07997 * 120.07401 * 179.97438 * 25 11 10 45 45 H 1.07999 * 119.91872 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 16 4.1747 3.1526 0.0014 6 8 3.8783 3.7858 1.2385 7 8 3.8791 3.7866 -1.2355 8 6 5.9300 2.9983 0.0013 9 6 6.6165 2.9431 1.2015 10 6 7.9902 2.8166 1.2087 11 6 8.6889 2.7562 0.0012 12 6 10.1605 2.6278 0.0010 13 8 10.7127 1.9627 -0.8541 14 7 10.8911 3.2478 0.9489 15 6 12.2577 3.2416 0.8726 16 1 12.7578 2.5635 0.1971 17 6 13.0021 4.1085 1.6648 18 7 12.5935 4.4043 2.8778 19 14 14.5832 4.8525 1.0045 20 1 14.2852 5.6468 -0.2142 21 1 15.1839 5.7351 2.0367 22 1 15.5379 3.7664 0.6663 23 6 10.2225 3.9284 2.0606 24 6 10.2389 3.0251 3.2954 25 6 7.9901 2.8182 -1.2064 26 6 6.6160 2.9389 -1.1989 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9336 0.9285 -0.8892 35 1 3.9330 0.9286 0.8908 36 1 6.0753 2.9944 2.1346 37 1 8.5244 2.7695 2.1461 38 1 13.1127 5.0094 3.4304 39 1 10.7448 4.8587 2.2840 40 1 9.1911 4.1480 1.7847 41 1 9.9684 2.0095 3.0063 42 1 11.2376 3.0247 3.7321 43 1 9.5223 3.3976 4.0275 44 1 8.5244 2.7724 -2.1438 45 1 6.0745 2.9873 -2.1321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277475484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:08 Heat of formation + Delta-G solvation = -78.196147 kcal Electronic energy + Delta-G solvation = -27256.735426 eV Core-core repulsion = 23366.894921 eV Total energy + Delta-G solvation = -3889.840505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.37696 -39.23114 -38.13604 -37.25997 -36.99847 -36.61937 -34.31450 -32.43210 -32.23388 -31.35744 -31.20131 -27.48293 -25.42088 -24.78224 -23.98605 -23.75947 -22.10332 -21.30375 -20.02566 -19.05765 -18.66971 -18.28915 -17.28910 -17.18502 -16.90374 -16.47578 -16.11589 -16.06614 -15.92876 -15.43394 -15.17163 -14.85172 -14.74671 -14.24481 -14.19010 -14.13863 -13.81082 -13.72911 -13.54837 -13.21442 -13.13917 -13.02393 -12.93445 -12.74047 -12.62961 -12.41325 -12.27978 -12.17628 -12.14747 -12.10915 -11.88586 -11.78829 -11.48441 -11.26585 -10.74361 -10.59201 -10.22966 -10.11852 -9.87424 -8.59969 -5.89037 -0.92773 -0.47389 0.25272 1.30225 1.39726 1.47247 1.79175 1.91258 2.16748 2.48896 2.77962 2.94451 3.01586 3.16917 3.61856 3.69971 3.77813 3.87011 3.91459 4.09039 4.19812 4.29642 4.36954 4.45316 4.58543 4.60777 4.64484 4.70018 4.76002 4.79331 4.90795 4.94741 4.95695 4.98684 5.03825 5.09020 5.26780 5.28653 5.32623 5.34533 5.42731 5.49033 5.74024 5.85249 5.95205 6.38922 7.03212 7.29508 7.91016 8.38228 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002500 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.515694 B =11197.309921 C =11418.269612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.118 4.118 3 C -0.128 4.128 4 C -0.582 4.582 5 S 2.509 3.491 6 O -0.965 6.965 7 O -0.968 6.968 8 C -0.660 4.660 9 C -0.028 4.028 10 C -0.147 4.147 11 C -0.061 4.061 12 C 0.434 3.566 13 O -0.642 6.642 14 N -0.422 5.422 15 C -0.366 4.366 16 H 0.076 0.924 17 C 0.026 3.974 18 N -0.831 5.831 19 Si 0.972 3.028 20 H -0.279 1.279 21 H -0.262 1.262 22 H -0.273 1.273 23 C 0.085 3.915 24 C -0.147 4.147 25 C -0.117 4.117 26 C -0.026 4.026 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.283 0.717 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.685 -4.668 0.485 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.715 4.715 5 S 2.693 3.307 6 O -0.962 6.962 7 O -0.965 6.965 8 C -0.745 4.745 9 C -0.046 4.046 10 C -0.166 4.166 11 C -0.065 4.065 12 C 0.226 3.774 13 O -0.533 6.533 14 N -0.136 5.136 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.182 4.182 18 N -0.465 5.465 19 Si 0.795 3.205 20 H -0.205 1.205 21 H -0.186 1.186 22 H -0.198 1.198 23 C -0.036 4.036 24 C -0.205 4.205 25 C -0.137 4.137 26 C -0.044 4.044 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.189 0.811 37 H 0.176 0.824 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.146 0.854 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.711 -4.014 0.354 22.082 hybrid contribution 2.122 -0.304 -0.378 2.177 sum -19.589 -4.318 -0.024 20.059 Atomic orbital electron populations 1.21850 0.95264 1.02398 1.02295 1.21510 0.96281 0.94423 1.03443 1.21605 0.89646 1.00899 1.04500 1.30181 1.06500 1.19839 1.14981 1.05129 0.72969 0.79244 0.73408 1.93527 1.83199 1.74230 1.45273 1.93523 1.83270 1.74268 1.45440 1.30874 1.26700 1.17944 0.98993 1.21171 0.93456 0.91980 0.98012 1.22331 0.95498 1.00351 0.98437 1.20433 0.92818 0.97307 0.95901 1.18452 0.87374 0.86667 0.84873 1.90549 1.73416 1.46668 1.42659 1.43983 1.06074 1.43809 1.19757 1.19443 0.81612 1.22817 1.25383 0.90600 1.25930 1.02674 0.95818 0.93807 1.70151 1.40817 1.30749 1.04804 0.85347 0.77809 0.78649 0.78694 1.20493 1.18622 1.19768 1.22435 0.96481 0.98288 0.86436 1.22066 1.04187 0.97061 0.97144 1.21359 0.94956 1.00173 0.97195 1.21058 0.93177 0.92145 0.98055 0.92412 0.91911 0.92362 0.90837 0.90759 0.89682 0.89771 0.82126 0.81981 0.81128 0.82371 0.90582 0.89683 0.90018 0.94979 0.90484 0.90268 0.85396 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.12 -1.00 5.93 30.59 0.18 -0.82 16 3 C -0.13 -1.31 5.22 30.59 0.16 -1.15 16 4 C -0.58 -5.94 5.98 71.98 0.43 -5.51 16 5 S 2.51 49.25 5.16 -56.49 -0.29 48.95 16 6 O -0.96 -24.15 17.11 -127.65 -2.18 -26.33 16 7 O -0.97 -24.58 17.11 -127.65 -2.18 -26.76 16 8 C -0.66 -16.47 5.67 22.33 0.13 -16.34 16 9 C -0.03 -0.74 9.45 22.23 0.21 -0.53 16 10 C -0.15 -4.97 7.39 22.54 0.17 -4.80 16 11 C -0.06 -2.51 5.44 -20.09 -0.11 -2.62 16 12 C 0.43 22.65 7.34 86.75 0.64 23.29 16 13 O -0.64 -38.38 16.46 -4.01 -0.07 -38.44 16 14 N -0.42 -21.98 2.64 -638.95 -1.69 -23.67 16 15 C -0.37 -20.54 9.24 84.10 0.78 -19.76 16 16 H 0.08 4.67 7.42 -2.91 -0.02 4.65 16 17 C 0.03 1.30 5.04 84.96 0.43 1.73 16 18 N -0.83 -39.55 8.42 21.68 0.18 -39.37 16 19 Si 0.97 40.49 29.67 68.60 2.04 42.52 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 C 0.09 3.72 4.88 86.38 0.42 4.14 16 24 C -0.15 -5.72 8.37 71.98 0.60 -5.11 16 25 C -0.12 -4.18 9.62 22.54 0.22 -3.96 16 26 C -0.03 -0.71 9.45 22.23 0.21 -0.50 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.16 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.17 3.44 7.55 -2.91 -0.02 3.42 16 37 H 0.16 5.24 3.32 -2.91 -0.01 5.23 16 38 H 0.28 12.41 8.31 -92.71 -0.77 11.64 16 39 H 0.09 3.96 5.84 -2.39 -0.01 3.94 16 40 H 0.08 3.17 4.30 -2.39 -0.01 3.16 16 41 H 0.03 1.24 7.41 -2.39 -0.02 1.22 16 42 H 0.08 3.40 6.07 -2.39 -0.01 3.39 16 43 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.13 4.67 8.01 -2.91 -0.02 4.65 16 45 H 0.17 3.59 7.56 -2.91 -0.02 3.56 16 Total: -1.00 -75.65 374.02 1.98 -73.68 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 1.00 Total: 21.97 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 5.17 Total: -32.55 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -1.51 Total: -63.04 kcal Atomic # 8 Polarization: -87.10 SS G_CDS: -4.43 Total: -91.54 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.04 Total: 42.52 kcal Atomic # 16 Polarization: 49.25 SS G_CDS: -0.29 Total: 48.95 kcal Total: -75.65 1.98 -73.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277475484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.520 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds