Wall clock time and date at job start Tue Mar 31 2020 23:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 108.10742 * 2 1 4 4 C 1.53173 * 108.34632 * 242.78087 * 2 1 3 5 5 N 1.45473 * 107.18617 * 147.30558 * 4 2 1 6 6 C 1.46896 * 110.99735 * 226.81379 * 5 4 2 7 7 C 1.50702 * 109.46920 * 169.99935 * 6 5 4 8 8 C 1.38303 * 119.92904 * 89.99996 * 7 6 5 9 9 C 1.38108 * 120.06534 * 180.02562 * 8 7 6 10 10 C 1.38877 * 119.93181 * 359.97438 * 9 8 7 11 11 O 1.35747 * 120.06827 * 179.97438 * 10 9 8 12 12 C 1.34822 * 117.00161 * 5.53068 * 11 10 9 13 13 H 1.08004 * 120.00204 * 354.94245 * 12 11 10 14 14 C 1.38654 * 120.00200 * 174.94014 * 12 11 10 15 15 N 1.31553 * 119.99993 * 359.72918 * 14 12 11 16 16 Si 1.86806 * 120.00148 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47125 * 179.72603 * 16 14 12 18 18 H 1.48501 * 109.47019 * 299.72866 * 16 14 12 19 19 H 1.48501 * 109.46793 * 59.72617 * 16 14 12 20 20 C 1.38884 * 119.86025 * 0.25082 * 10 9 8 21 21 C 1.38097 * 119.93210 * 359.49481 * 20 10 9 22 22 C 1.46722 * 110.69140 * 103.07682 * 5 4 2 23 23 C 1.53599 * 116.32121 * 317.73219 * 22 5 4 24 24 S 1.80117 * 112.84259 * 315.47735 * 23 22 5 25 25 O 1.42106 * 108.60345 * 330.90186 * 24 23 22 26 26 O 1.42101 * 108.62500 * 199.80043 * 24 23 22 27 27 C 1.45673 * 108.35302 * 117.22559 * 2 1 3 28 28 H 1.09004 * 109.47097 * 177.22417 * 1 2 3 29 29 H 1.09003 * 109.47163 * 297.22154 * 1 2 3 30 30 H 1.08996 * 109.47731 * 57.21954 * 1 2 3 31 31 H 1.08994 * 109.91772 * 27.88399 * 4 2 1 32 32 H 1.09004 * 109.97932 * 266.75672 * 4 2 1 33 33 H 1.08997 * 109.47596 * 49.99836 * 6 5 4 34 34 H 1.08999 * 109.47091 * 289.99619 * 6 5 4 35 35 H 1.07994 * 119.96977 * 0.03978 * 8 7 6 36 36 H 1.07998 * 120.03431 * 180.02562 * 9 8 7 37 37 H 0.97007 * 120.00140 * 0.27194 * 15 14 12 38 38 H 1.07997 * 120.03119 * 179.72764 * 20 10 9 39 39 H 1.08003 * 119.96612 * 180.23034 * 21 20 10 40 40 H 1.09005 * 108.10821 * 79.50926 * 22 5 4 41 41 H 1.08996 * 108.11149 * 195.94743 * 22 5 4 42 42 H 1.09001 * 108.80502 * 194.61022 * 23 22 5 43 43 H 1.09003 * 108.71989 * 76.28618 * 23 22 5 44 44 H 1.09005 * 109.42607 * 306.15594 * 27 2 1 45 45 H 1.08998 * 109.42754 * 65.99046 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8688 1.0360 0.0000 4 6 2.0121 -0.6650 -1.2929 5 7 3.2575 -0.0157 -1.6717 6 6 3.2562 0.3338 -3.0985 7 6 4.4412 1.2144 -3.4011 8 6 5.6445 0.6464 -3.7781 9 6 6.7324 1.4507 -4.0555 10 6 6.6169 2.8311 -3.9561 11 8 7.6846 3.6242 -4.2276 12 6 8.7932 3.0184 -4.6985 13 1 8.8324 1.9412 -4.7666 14 6 9.8830 3.7781 -5.0955 15 7 9.8333 5.0904 -5.0176 16 14 11.4192 2.9387 -5.7472 17 1 12.4298 3.9657 -6.1069 18 1 11.9749 2.0423 -4.7018 19 1 11.0742 2.1407 -6.9512 20 6 5.4085 3.3981 -3.5727 21 6 4.3228 2.5887 -3.3017 22 6 4.4069 -0.8648 -1.3393 23 6 4.3586 -1.5739 0.0224 24 16 3.8143 -0.4917 1.3554 25 8 4.1890 0.8418 1.0383 26 8 4.2279 -1.0533 2.5934 27 6 1.9887 -0.6325 1.2295 28 1 -0.3633 -1.0265 -0.0498 29 1 -0.3634 0.4701 0.9139 30 1 -0.3634 0.5564 -0.8639 31 1 1.2692 -0.5304 -2.0790 32 1 2.1843 -1.7279 -1.1232 33 1 2.3366 0.8660 -3.3414 34 1 3.3179 -0.5761 -3.6954 35 1 5.7336 -0.4271 -3.8558 36 1 7.6718 1.0067 -4.3503 37 1 9.0357 5.5264 -4.6788 38 1 5.3168 4.4710 -3.4903 39 1 3.3817 3.0292 -3.0072 40 1 4.5015 -1.6255 -2.1142 41 1 5.3043 -0.2468 -1.3678 42 1 5.3544 -1.9491 0.2587 43 1 3.6728 -2.4183 -0.0470 44 1 1.5272 -0.1393 2.0850 45 1 1.7058 -1.6852 1.2230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277526674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:52 Heat of formation + Delta-G solvation = -63.280239 kcal Electronic energy + Delta-G solvation = -27830.596768 eV Core-core repulsion = 23941.403065 eV Total energy + Delta-G solvation = -3889.193703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.65935 -38.79985 -37.03282 -36.73600 -36.02745 -35.31732 -32.42747 -31.81127 -30.23710 -29.63006 -28.00457 -26.42876 -25.17037 -24.56415 -22.13065 -21.81041 -20.61522 -20.45302 -18.82377 -18.35661 -17.29455 -16.99954 -16.65942 -16.06485 -16.02876 -15.29095 -15.13030 -14.87619 -14.56280 -14.00323 -13.91442 -13.72926 -13.66352 -13.59871 -13.43915 -12.98878 -12.88201 -12.69137 -12.54359 -12.24383 -12.09592 -12.03786 -11.83196 -11.74011 -11.34987 -11.15538 -11.04565 -10.98641 -10.87965 -10.71993 -10.60506 -10.36121 -10.28995 -10.25399 -9.38796 -8.76445 -8.47103 -8.19302 -7.23150 -6.75631 -4.04572 -0.13810 2.17753 2.23360 2.53151 3.24004 3.28555 3.45674 3.51611 3.65776 3.74146 4.12861 4.20862 4.28740 4.39666 4.55403 4.61966 4.75143 4.87902 4.96321 5.09643 5.12233 5.19118 5.20921 5.24406 5.28014 5.34423 5.37847 5.43368 5.63433 5.68919 5.70302 5.78611 5.79645 5.87528 5.98854 6.17294 6.37791 6.64960 6.77839 6.86148 6.91736 7.11901 7.26755 7.34079 7.57854 7.75472 8.41782 8.93696 9.63159 10.68532 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.002776 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.135340 B =10085.834557 C =10694.992114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.105 0.895 4 C 0.034 3.966 5 N -0.529 5.529 6 C 0.119 3.881 7 C -0.182 4.182 8 C -0.067 4.067 9 C -0.231 4.231 10 C 0.160 3.840 11 O -0.202 6.202 12 C -0.472 4.472 13 H 0.083 0.917 14 C 0.010 3.990 15 N -0.881 5.881 16 Si 1.095 2.905 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.282 1.282 20 C -0.196 4.196 21 C -0.046 4.046 22 C 0.074 3.926 23 C -0.619 4.619 24 S 2.413 3.587 25 O -0.904 6.904 26 O -0.952 6.952 27 C -0.577 4.577 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.282 0.718 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.125 0.875 44 H 0.133 0.867 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.645 -15.738 8.241 25.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.124 0.876 4 C -0.094 4.094 5 N -0.253 5.253 6 C -0.007 4.007 7 C -0.183 4.183 8 C -0.085 4.085 9 C -0.251 4.251 10 C 0.107 3.893 11 O -0.106 6.106 12 C -0.548 4.548 13 H 0.101 0.899 14 C -0.196 4.196 15 N -0.513 5.513 16 Si 0.919 3.081 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.215 4.215 21 C -0.065 4.065 22 C -0.055 4.055 23 C -0.747 4.747 24 S 2.594 3.406 25 O -0.901 6.901 26 O -0.949 6.949 27 C -0.706 4.706 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.151 0.849 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.444 -14.253 8.501 23.363 hybrid contribution -2.043 -1.895 -0.234 2.797 sum -18.487 -16.148 8.266 25.901 Atomic orbital electron populations 1.21919 0.93983 1.01776 1.02270 1.19665 0.97382 1.02763 0.91282 0.87643 1.22383 0.93050 0.96555 0.97444 1.62079 1.00907 1.41900 1.20463 1.20917 0.97677 0.97110 0.84992 1.19028 0.94889 0.93672 1.10733 1.20584 0.92384 0.97883 0.97692 1.21111 0.99936 0.93438 1.10573 1.19255 0.87618 0.89844 0.92586 1.83666 1.19462 1.35431 1.72067 1.22190 0.91895 0.93977 1.46718 0.89948 1.26525 1.01052 0.95808 0.96173 1.70568 1.32017 1.08542 1.40172 0.83116 0.73692 0.74850 0.76397 1.19770 1.20745 1.20788 1.20207 0.91540 0.99595 1.10158 1.20430 0.97112 0.92496 0.96458 1.21606 0.96755 0.95442 0.91662 1.30423 1.13313 1.15741 1.15233 1.08362 0.79180 0.76990 0.76047 1.93654 1.79893 1.32340 1.84191 1.93585 1.80592 1.80578 1.40187 1.29004 1.25545 1.09716 1.06317 0.92765 0.92450 0.92064 0.89704 0.92731 0.90024 0.94441 0.87979 0.85608 0.90749 0.86711 0.86885 0.93420 0.88555 0.84068 0.85702 0.84901 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.82 37.16 0.33 -0.49 16 2 C -0.09 -0.68 2.09 -93.99 -0.20 -0.87 16 3 H 0.11 1.02 7.43 -51.93 -0.39 0.63 16 4 C 0.03 0.26 4.88 -4.50 -0.02 0.24 16 5 N -0.53 -5.77 3.87 -236.92 -0.92 -6.68 16 6 C 0.12 1.40 4.89 -4.98 -0.02 1.38 16 7 C -0.18 -2.94 4.89 -104.57 -0.51 -3.45 16 8 C -0.07 -1.17 8.28 -39.61 -0.33 -1.50 16 9 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 O -0.20 -5.77 9.16 0.08 0.00 -5.77 16 12 C -0.47 -13.39 9.49 30.89 0.29 -13.10 16 13 H 0.08 2.19 5.20 -52.48 -0.27 1.92 16 14 C 0.01 0.28 5.49 -17.52 -0.10 0.18 16 15 N -0.88 -26.57 13.70 55.48 0.76 -25.81 16 16 Si 1.10 23.83 29.92 -169.99 -5.09 18.75 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 C -0.20 -4.16 9.99 -39.39 -0.39 -4.55 16 21 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 22 C 0.07 0.80 4.06 -3.61 -0.01 0.78 16 23 C -0.62 -5.03 5.56 37.47 0.21 -4.82 16 24 S 2.41 24.76 5.20 -107.50 -0.56 24.20 16 25 O -0.90 -13.54 16.75 -57.83 -0.97 -14.51 16 26 O -0.95 -12.66 18.10 -57.83 -1.05 -13.71 16 27 C -0.58 -3.78 5.15 33.70 0.17 -3.61 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.31 8.01 -51.93 -0.42 -0.10 16 30 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.08 0.55 7.03 -51.93 -0.37 0.18 16 32 H 0.05 0.31 6.16 -51.93 -0.32 -0.01 16 33 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 34 H 0.04 0.40 7.85 -51.93 -0.41 -0.01 16 35 H 0.10 1.50 8.03 -52.49 -0.42 1.08 16 36 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 37 H 0.28 8.72 7.97 -40.82 -0.33 8.39 16 38 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 40 H 0.05 0.45 7.79 -51.93 -0.40 0.05 16 41 H 0.10 1.32 6.92 -51.93 -0.36 0.96 16 42 H 0.14 1.02 8.14 -51.74 -0.42 0.60 16 43 H 0.12 0.59 7.03 -51.74 -0.36 0.23 16 44 H 0.13 0.73 7.99 -51.93 -0.41 0.31 16 45 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -36.47 366.60 -10.36 -46.83 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.49 Total: 3.95 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: -1.59 Total: -32.77 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: -0.16 Total: -32.50 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -2.01 Total: -33.98 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.75 kcal Atomic # 16 Polarization: 24.76 SS G_CDS: -0.56 Total: 24.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.47 -10.36 -46.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277526674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.451 kcal (2) G-P(sol) polarization free energy of solvation -36.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds