Wall clock time and date at job start Tue Mar 31 2020 23:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 108.10742 * 2 1 4 4 C 1.53173 * 108.34632 * 242.78087 * 2 1 3 5 5 N 1.45473 * 107.18617 * 147.30558 * 4 2 1 6 6 C 1.46896 * 110.99735 * 226.81379 * 5 4 2 7 7 C 1.50702 * 109.46920 * 169.99935 * 6 5 4 8 8 C 1.38303 * 119.92904 * 89.99996 * 7 6 5 9 9 C 1.38108 * 120.06534 * 180.02562 * 8 7 6 10 10 C 1.38877 * 119.93181 * 359.97438 * 9 8 7 11 11 O 1.35747 * 120.06827 * 179.97438 * 10 9 8 12 12 C 1.34822 * 117.00161 * 5.53068 * 11 10 9 13 13 H 1.08004 * 120.00204 * 354.94245 * 12 11 10 14 14 C 1.38654 * 120.00200 * 174.94014 * 12 11 10 15 15 N 1.31553 * 119.99993 * 359.72918 * 14 12 11 16 16 Si 1.86806 * 120.00148 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47125 * 179.72603 * 16 14 12 18 18 H 1.48501 * 109.47019 * 299.72866 * 16 14 12 19 19 H 1.48501 * 109.46793 * 59.72617 * 16 14 12 20 20 C 1.38884 * 119.86025 * 0.25082 * 10 9 8 21 21 C 1.38097 * 119.93210 * 359.49481 * 20 10 9 22 22 C 1.46722 * 110.69140 * 103.07682 * 5 4 2 23 23 C 1.53599 * 116.32121 * 317.73219 * 22 5 4 24 24 S 1.80117 * 112.84259 * 315.47735 * 23 22 5 25 25 O 1.42106 * 108.60345 * 330.90186 * 24 23 22 26 26 O 1.42101 * 108.62500 * 199.80043 * 24 23 22 27 27 C 1.45673 * 108.35302 * 117.22559 * 2 1 3 28 28 H 1.09004 * 109.47097 * 177.22417 * 1 2 3 29 29 H 1.09003 * 109.47163 * 297.22154 * 1 2 3 30 30 H 1.08996 * 109.47731 * 57.21954 * 1 2 3 31 31 H 1.08994 * 109.91772 * 27.88399 * 4 2 1 32 32 H 1.09004 * 109.97932 * 266.75672 * 4 2 1 33 33 H 1.08997 * 109.47596 * 49.99836 * 6 5 4 34 34 H 1.08999 * 109.47091 * 289.99619 * 6 5 4 35 35 H 1.07994 * 119.96977 * 0.03978 * 8 7 6 36 36 H 1.07998 * 120.03431 * 180.02562 * 9 8 7 37 37 H 0.97007 * 120.00140 * 0.27194 * 15 14 12 38 38 H 1.07997 * 120.03119 * 179.72764 * 20 10 9 39 39 H 1.08003 * 119.96612 * 180.23034 * 21 20 10 40 40 H 1.09005 * 108.10821 * 79.50926 * 22 5 4 41 41 H 1.08996 * 108.11149 * 195.94743 * 22 5 4 42 42 H 1.09001 * 108.80502 * 194.61022 * 23 22 5 43 43 H 1.09003 * 108.71989 * 76.28618 * 23 22 5 44 44 H 1.09005 * 109.42607 * 306.15594 * 27 2 1 45 45 H 1.08998 * 109.42754 * 65.99046 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8688 1.0360 0.0000 4 6 2.0121 -0.6650 -1.2929 5 7 3.2575 -0.0157 -1.6717 6 6 3.2562 0.3338 -3.0985 7 6 4.4412 1.2144 -3.4011 8 6 5.6445 0.6464 -3.7781 9 6 6.7324 1.4507 -4.0555 10 6 6.6169 2.8311 -3.9561 11 8 7.6846 3.6242 -4.2276 12 6 8.7932 3.0184 -4.6985 13 1 8.8324 1.9412 -4.7666 14 6 9.8830 3.7781 -5.0955 15 7 9.8333 5.0904 -5.0176 16 14 11.4192 2.9387 -5.7472 17 1 12.4298 3.9657 -6.1069 18 1 11.9749 2.0423 -4.7018 19 1 11.0742 2.1407 -6.9512 20 6 5.4085 3.3981 -3.5727 21 6 4.3228 2.5887 -3.3017 22 6 4.4069 -0.8648 -1.3393 23 6 4.3586 -1.5739 0.0224 24 16 3.8143 -0.4917 1.3554 25 8 4.1890 0.8418 1.0383 26 8 4.2279 -1.0533 2.5934 27 6 1.9887 -0.6325 1.2295 28 1 -0.3633 -1.0265 -0.0498 29 1 -0.3634 0.4701 0.9139 30 1 -0.3634 0.5564 -0.8639 31 1 1.2692 -0.5304 -2.0790 32 1 2.1843 -1.7279 -1.1232 33 1 2.3366 0.8660 -3.3414 34 1 3.3179 -0.5761 -3.6954 35 1 5.7336 -0.4271 -3.8558 36 1 7.6718 1.0067 -4.3503 37 1 9.0357 5.5264 -4.6788 38 1 5.3168 4.4710 -3.4903 39 1 3.3817 3.0292 -3.0072 40 1 4.5015 -1.6255 -2.1142 41 1 5.3043 -0.2468 -1.3678 42 1 5.3544 -1.9491 0.2587 43 1 3.6728 -2.4183 -0.0470 44 1 1.5272 -0.1393 2.0850 45 1 1.7058 -1.6852 1.2230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277526674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:51 Heat of formation + Delta-G solvation = -91.259301 kcal Electronic energy + Delta-G solvation = -27831.810031 eV Core-core repulsion = 23941.403065 eV Total energy + Delta-G solvation = -3890.406966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.00234 -40.00927 -38.37472 -37.78727 -36.93181 -36.15106 -34.34131 -32.83068 -31.84696 -30.86869 -28.51020 -27.49141 -26.71805 -25.81675 -23.61413 -22.96824 -21.84848 -21.18496 -20.23677 -19.61355 -18.70801 -17.95191 -17.65874 -17.03949 -16.84050 -16.66518 -16.30097 -15.94688 -15.69880 -15.58586 -15.39274 -15.09234 -14.95365 -14.50989 -14.37501 -14.29111 -13.83097 -13.61322 -13.22350 -13.04342 -12.97082 -12.94135 -12.90622 -12.83618 -12.63402 -12.51228 -12.30207 -12.14802 -11.96761 -11.94509 -11.70559 -11.60688 -11.49519 -11.25235 -10.99294 -10.75337 -9.80320 -9.25106 -8.96456 -8.91636 -6.24633 -0.86530 0.56596 0.64306 1.46966 1.60019 1.77597 1.85485 2.35794 2.68082 2.83313 2.97969 3.02481 3.22430 3.36119 3.67705 3.74724 3.81078 3.92682 4.00294 4.02639 4.16354 4.26479 4.33620 4.43152 4.48766 4.55566 4.60283 4.69374 4.76105 4.77848 4.85240 4.85470 4.91042 4.98996 5.04206 5.21366 5.23561 5.26833 5.39965 5.47086 5.55106 5.72652 5.76471 6.02647 6.08502 6.25184 6.32699 6.86851 7.64228 8.50186 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.002776 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.135340 B =10085.834557 C =10694.992114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.076 0.924 4 C 0.031 3.969 5 N -0.550 5.550 6 C 0.120 3.880 7 C -0.151 4.151 8 C -0.062 4.062 9 C -0.243 4.243 10 C 0.114 3.886 11 O -0.256 6.256 12 C -0.487 4.487 13 H 0.091 0.909 14 C -0.047 4.047 15 N -0.919 5.919 16 Si 1.146 2.854 17 H -0.273 1.273 18 H -0.261 1.261 19 H -0.258 1.258 20 C -0.210 4.210 21 C -0.047 4.047 22 C 0.068 3.932 23 C -0.605 4.605 24 S 2.393 3.607 25 O -0.970 6.970 26 O -0.997 6.997 27 C -0.550 4.550 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.065 0.935 35 H 0.141 0.859 36 H 0.115 0.885 37 H 0.259 0.741 38 H 0.108 0.892 39 H 0.146 0.854 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.147 0.853 43 H 0.173 0.827 44 H 0.145 0.855 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.497 -20.625 8.156 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.096 4.096 5 N -0.274 5.274 6 C -0.007 4.007 7 C -0.152 4.152 8 C -0.080 4.080 9 C -0.262 4.262 10 C 0.064 3.936 11 O -0.164 6.164 12 C -0.563 4.563 13 H 0.109 0.891 14 C -0.242 4.242 15 N -0.554 5.554 16 Si 0.961 3.039 17 H -0.198 1.198 18 H -0.185 1.185 19 H -0.182 1.182 20 C -0.230 4.230 21 C -0.065 4.065 22 C -0.060 4.060 23 C -0.736 4.736 24 S 2.581 3.419 25 O -0.967 6.967 26 O -0.994 6.994 27 C -0.682 4.682 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.164 0.836 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.165 0.835 43 H 0.191 0.809 44 H 0.163 0.837 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -20.329 -19.163 8.469 29.193 hybrid contribution -1.310 -0.579 -0.084 1.435 sum -21.639 -19.742 8.385 30.468 Atomic orbital electron populations 1.21902 0.92098 1.03200 1.02468 1.19686 0.98714 1.01324 0.91703 0.90573 1.22562 0.91479 0.97931 0.97667 1.61864 1.02540 1.43518 1.19513 1.21001 0.95849 0.97474 0.86333 1.19716 0.96075 0.93778 1.05608 1.20990 0.91429 0.99462 0.96134 1.21245 1.01115 0.92801 1.11084 1.19841 0.87873 0.91172 0.94707 1.83642 1.20713 1.36953 1.75124 1.22586 0.92506 0.94583 1.46644 0.89146 1.28429 1.04356 0.95668 0.95767 1.70708 1.31108 1.09849 1.43734 0.82595 0.69762 0.74396 0.77170 1.19809 1.18539 1.18242 1.20491 0.91913 1.00111 1.10461 1.20886 0.97094 0.93296 0.95240 1.21612 0.95367 0.95410 0.93648 1.30247 1.15121 1.15952 1.12256 1.08524 0.81417 0.76023 0.75886 1.93581 1.82194 1.35949 1.84952 1.93525 1.82492 1.80702 1.42642 1.28797 1.19907 1.12768 1.06716 0.90655 0.92472 0.91898 0.87771 0.89563 0.87740 0.91677 0.84084 0.86744 0.93275 0.87364 0.83600 0.91090 0.92678 0.83504 0.80933 0.83723 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.82 71.98 0.64 -0.24 16 2 C -0.09 -0.97 2.09 -12.98 -0.03 -1.00 16 3 H 0.08 1.29 7.43 -2.39 -0.02 1.28 16 4 C 0.03 0.27 4.88 86.63 0.42 0.70 16 5 N -0.55 -9.51 3.87 -903.49 -3.49 -13.00 16 6 C 0.12 2.18 4.89 85.56 0.42 2.60 16 7 C -0.15 -4.45 4.89 -19.83 -0.10 -4.55 16 8 C -0.06 -2.05 8.28 22.25 0.18 -1.87 16 9 C -0.24 -10.85 9.17 22.39 0.21 -10.65 16 10 C 0.11 5.88 6.65 22.58 0.15 6.03 16 11 O -0.26 -15.90 9.16 -22.63 -0.21 -16.11 16 12 C -0.49 -29.48 9.49 67.92 0.64 -28.84 16 13 H 0.09 5.07 5.20 -2.91 -0.02 5.06 16 14 C -0.05 -2.76 5.49 84.83 0.47 -2.29 16 15 N -0.92 -59.35 13.70 21.61 0.30 -59.06 16 16 Si 1.15 49.32 29.92 68.60 2.05 51.38 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 20 C -0.21 -9.36 9.99 22.39 0.22 -9.14 16 21 C -0.05 -1.60 9.69 22.25 0.22 -1.39 16 22 C 0.07 1.21 4.06 86.54 0.35 1.56 16 23 C -0.61 -7.55 5.56 72.18 0.40 -7.15 16 24 S 2.39 45.73 5.20 -56.49 -0.29 45.44 16 25 O -0.97 -29.94 16.75 -127.38 -2.13 -32.07 16 26 O -1.00 -26.14 18.10 -127.38 -2.31 -28.44 16 27 C -0.55 -4.82 5.15 69.74 0.36 -4.46 16 28 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 29 H 0.06 0.39 8.01 -2.39 -0.02 0.37 16 30 H 0.06 0.41 8.09 -2.39 -0.02 0.39 16 31 H 0.10 0.59 7.03 -2.39 -0.02 0.57 16 32 H 0.09 0.27 6.16 -2.38 -0.01 0.25 16 33 H 0.10 1.51 7.79 -2.39 -0.02 1.49 16 34 H 0.07 0.91 7.85 -2.39 -0.02 0.89 16 35 H 0.14 3.59 8.03 -2.91 -0.02 3.57 16 36 H 0.11 5.27 5.64 -2.91 -0.02 5.25 16 37 H 0.26 17.48 7.97 -92.70 -0.74 16.75 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 40 H 0.07 0.94 7.79 -2.38 -0.02 0.92 16 41 H 0.05 1.43 6.92 -2.39 -0.02 1.41 16 42 H 0.15 1.73 8.14 -2.50 -0.02 1.71 16 43 H 0.17 0.46 7.03 -2.50 -0.02 0.44 16 44 H 0.14 1.05 7.99 -2.38 -0.02 1.03 16 45 H 0.17 0.09 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -91.37 366.60 -0.51 -91.87 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 1.02 Total: 20.70 kcal Atomic # 6 Polarization: -65.25 SS G_CDS: 4.55 Total: -60.70 kcal Atomic # 7 Polarization: -68.87 SS G_CDS: -3.20 Total: -72.06 kcal Atomic # 8 Polarization: -71.98 SS G_CDS: -4.65 Total: -76.62 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.05 Total: 51.38 kcal Atomic # 16 Polarization: 45.73 SS G_CDS: -0.29 Total: 45.44 kcal Total: -91.37 -0.51 -91.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277526674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.614 kcal (2) G-P(sol) polarization free energy of solvation -91.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds