Wall clock time and date at job start Tue Mar 31 2020 23:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.37280 * 2 1 4 4 C 1.45107 * 109.37179 * 119.76349 * 2 1 3 5 5 N 1.47014 * 115.50060 * 183.61574 * 4 2 1 6 6 C 1.46904 * 111.00475 * 143.21305 * 5 4 2 7 7 C 1.50703 * 109.47128 * 169.99903 * 6 5 4 8 8 C 1.38294 * 119.92983 * 90.00153 * 7 6 5 9 9 C 1.38096 * 120.06969 * 179.97438 * 8 7 6 10 10 C 1.38887 * 119.92909 * 359.97438 * 9 8 7 11 11 O 1.35746 * 120.06604 * 180.02562 * 10 9 8 12 12 C 1.34833 * 117.00531 * 5.54199 * 11 10 9 13 13 H 1.07995 * 119.99432 * 354.93787 * 12 11 10 14 14 C 1.38650 * 120.00178 * 174.66237 * 12 11 10 15 15 N 1.31559 * 119.99889 * 180.26988 * 14 12 11 16 16 Si 1.86798 * 120.00128 * 0.27972 * 14 12 11 17 17 H 1.48494 * 109.47534 * 89.99648 * 16 14 12 18 18 H 1.48504 * 109.47255 * 209.99738 * 16 14 12 19 19 H 1.48504 * 109.47038 * 329.99239 * 16 14 12 20 20 C 1.38871 * 119.86145 * 0.28182 * 10 9 8 21 21 C 1.38107 * 119.92971 * 359.46603 * 20 10 9 22 22 C 1.45430 * 105.32082 * 263.42240 * 5 4 2 23 23 C 1.54638 * 108.86522 * 107.53768 * 22 5 4 24 24 S 1.82375 * 110.75153 * 321.04258 * 23 22 5 25 25 O 1.42096 * 107.93204 * 203.83051 * 24 23 22 26 26 O 1.42095 * 107.92853 * 74.57072 * 24 23 22 27 27 C 1.55240 * 109.37137 * 240.36049 * 2 1 3 28 28 H 1.09003 * 109.47249 * 300.23585 * 1 2 3 29 29 H 1.08995 * 109.47125 * 60.23901 * 1 2 3 30 30 H 1.09002 * 109.47007 * 180.24110 * 1 2 3 31 31 H 1.08997 * 108.28542 * 62.05059 * 4 2 1 32 32 H 1.09006 * 108.13111 * 305.05955 * 4 2 1 33 33 H 1.08999 * 109.46946 * 50.00022 * 6 5 4 34 34 H 1.08993 * 109.46963 * 290.00084 * 6 5 4 35 35 H 1.08006 * 119.96631 * 0.02562 * 8 7 6 36 36 H 1.08002 * 120.04071 * 180.02562 * 9 8 7 37 37 H 0.97000 * 119.99831 * 180.02562 * 15 14 12 38 38 H 1.07995 * 120.03647 * 179.71990 * 20 10 9 39 39 H 1.07999 * 119.96577 * 180.27627 * 21 20 10 40 40 H 1.08998 * 109.57750 * 227.35271 * 22 5 4 41 41 H 1.09002 * 109.56992 * 347.72545 * 22 5 4 42 42 H 1.09001 * 109.22354 * 200.71410 * 23 22 5 43 43 H 1.09001 * 109.18773 * 81.35234 * 23 22 5 44 44 H 1.09000 * 109.43417 * 287.64385 * 27 2 1 45 45 H 1.08997 * 109.43300 * 47.50703 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0282 0.0000 4 6 2.0113 -0.6796 1.1883 5 7 3.4705 -0.6853 1.3669 6 6 3.8280 -0.5522 2.7855 7 6 5.3033 -0.8067 2.9579 8 6 6.1993 0.2432 2.8719 9 6 7.5518 0.0133 3.0298 10 6 8.0118 -1.2739 3.2759 11 8 9.3407 -1.5029 3.4322 12 6 10.1497 -0.4244 3.4517 13 1 9.7436 0.5585 3.2641 14 6 11.5018 -0.5767 3.7182 15 7 12.2901 0.4762 3.7425 16 14 12.2041 -2.2770 4.0426 17 1 12.6421 -2.8846 2.7604 18 1 13.3664 -2.1657 4.9602 19 1 11.1620 -3.1325 4.6652 20 6 7.1100 -2.3268 3.3564 21 6 5.7582 -2.0896 3.2027 22 6 3.9178 -1.9625 0.8344 23 6 4.6446 -1.7175 -0.5084 24 16 3.8004 -0.4201 -1.4728 25 8 4.1245 -0.6127 -2.8428 26 8 4.0981 0.8336 -0.8740 27 6 2.0449 -0.7243 -1.2729 28 1 -0.3634 0.5175 0.8879 29 1 -0.3633 0.5101 -0.8921 30 1 -0.3633 -1.0277 0.0043 31 1 1.6671 -1.7132 1.1542 32 1 1.5624 -0.2003 2.0584 33 1 3.2633 -1.2769 3.3720 34 1 3.5907 0.4553 3.1270 35 1 5.8408 1.2441 2.6817 36 1 8.2511 0.8337 2.9630 37 1 13.2361 0.3696 3.9286 38 1 7.4650 -3.3295 3.5432 39 1 5.0559 -2.9074 3.2697 40 1 4.6029 -2.4326 1.5399 41 1 3.0574 -2.6113 0.6708 42 1 4.6559 -2.6428 -1.0844 43 1 5.6702 -1.4066 -0.3091 44 1 1.8712 -1.7959 -1.1757 45 1 1.5101 -0.3486 -2.1452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277526678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:55 Heat of formation + Delta-G solvation = -72.435350 kcal Electronic energy + Delta-G solvation = -28078.472523 eV Core-core repulsion = 24188.881825 eV Total energy + Delta-G solvation = -3889.590698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.16252 -40.20532 -38.39477 -37.64650 -36.83587 -35.90043 -34.47462 -32.63945 -31.80587 -31.03628 -28.74949 -27.84145 -26.64160 -25.56996 -23.90715 -22.95525 -21.63658 -21.32807 -19.85016 -19.45668 -19.08629 -18.01260 -17.62200 -16.77582 -16.69883 -16.58618 -16.24007 -15.93796 -15.68663 -15.43536 -15.26222 -15.14516 -14.99460 -14.41014 -14.32732 -14.21730 -14.06215 -13.88409 -13.25798 -13.24138 -13.05315 -12.99910 -12.86481 -12.78081 -12.60373 -12.51521 -12.38377 -12.22297 -12.14678 -11.93380 -11.75212 -11.47525 -11.30432 -11.27756 -11.11055 -10.90987 -9.76723 -9.44607 -8.99569 -8.51575 -6.24898 -0.76309 0.55419 0.60858 1.29931 1.34941 1.50369 2.10326 2.26429 2.65659 2.90234 2.93476 3.08637 3.10479 3.24450 3.63480 3.80988 3.92361 3.95873 3.97896 4.08663 4.15398 4.27514 4.41081 4.52740 4.55029 4.57928 4.58830 4.67660 4.73681 4.85861 4.87267 4.90866 4.92680 4.98841 5.02178 5.22456 5.24730 5.33335 5.37761 5.45010 5.54811 5.74986 5.80920 5.90565 6.03810 6.09024 6.25034 6.82362 7.56331 8.60405 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.002922 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.212179 B = 9581.390982 C =10119.142009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 H 0.078 0.922 4 C 0.018 3.982 5 N -0.546 5.546 6 C 0.115 3.885 7 C -0.152 4.152 8 C -0.056 4.056 9 C -0.243 4.243 10 C 0.121 3.879 11 O -0.244 6.244 12 C -0.400 4.400 13 H 0.076 0.924 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.268 1.268 19 H -0.259 1.259 20 C -0.191 4.191 21 C -0.058 4.058 22 C 0.030 3.970 23 C -0.586 4.586 24 S 2.423 3.577 25 O -1.014 7.014 26 O -0.969 6.969 27 C -0.600 4.600 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.285 0.715 38 H 0.132 0.868 39 H 0.166 0.834 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.153 0.847 43 H 0.107 0.893 44 H 0.167 0.833 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.432 -9.311 -5.022 31.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 H 0.097 0.903 4 C -0.108 4.108 5 N -0.270 5.270 6 C -0.010 4.010 7 C -0.153 4.153 8 C -0.075 4.075 9 C -0.263 4.263 10 C 0.072 3.928 11 O -0.152 6.152 12 C -0.476 4.476 13 H 0.094 0.906 14 C -0.191 4.191 15 N -0.567 5.567 16 Si 0.797 3.203 17 H -0.191 1.191 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.210 4.210 21 C -0.076 4.076 22 C -0.099 4.099 23 C -0.718 4.718 24 S 2.611 3.389 25 O -1.011 7.011 26 O -0.966 6.966 27 C -0.733 4.733 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.150 0.850 39 H 0.183 0.817 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.171 0.829 43 H 0.126 0.874 44 H 0.185 0.815 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.454 -8.323 -5.718 30.193 hybrid contribution 0.984 -0.627 0.589 1.308 sum -27.470 -8.950 -5.129 29.343 Atomic orbital electron populations 1.21790 0.91180 1.03590 1.02986 1.19777 0.98269 1.00223 0.90475 0.90320 1.21375 0.86884 1.02911 0.99656 1.63097 1.12669 1.32425 1.18808 1.20998 0.89827 1.03089 0.87134 1.19676 0.95970 0.92832 1.06789 1.20902 0.91189 0.99807 0.95574 1.21270 0.97374 0.96728 1.10883 1.19731 0.83592 0.94670 0.94838 1.83498 1.14365 1.34415 1.82878 1.20683 0.90378 0.86582 1.49997 0.90648 1.25345 0.94984 1.03106 0.95618 1.69744 1.06378 1.31374 1.49157 0.85159 0.78086 0.78049 0.79042 1.19121 1.19232 1.18292 1.20533 0.92859 0.97471 1.10152 1.21005 0.93452 0.96844 0.96279 1.22814 1.01717 0.91723 0.93634 1.30628 1.12296 1.18301 1.10554 1.07395 0.80046 0.77467 0.73970 1.93484 1.84924 1.87539 1.35196 1.93493 1.83967 1.40839 1.78347 1.30503 1.21051 1.13244 1.08489 0.91218 0.91936 0.90488 0.89431 0.89180 0.90204 0.89574 0.86013 0.88308 0.90554 0.85043 0.81658 0.88621 0.86957 0.82863 0.87430 0.81499 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.08 71.98 0.65 -0.12 16 2 C -0.07 -0.71 2.43 -12.43 -0.03 -0.74 16 3 H 0.08 1.29 7.22 -2.39 -0.02 1.28 16 4 C 0.02 0.17 3.94 83.88 0.33 0.50 16 5 N -0.55 -9.08 3.43 -915.74 -3.14 -12.22 16 6 C 0.12 2.06 4.99 85.56 0.43 2.49 16 7 C -0.15 -4.11 4.73 -19.84 -0.09 -4.20 16 8 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 9 C -0.24 -11.07 9.17 22.39 0.21 -10.86 16 10 C 0.12 5.62 6.65 22.58 0.15 5.77 16 11 O -0.24 -13.35 8.59 -22.72 -0.20 -13.55 16 12 C -0.40 -24.16 9.95 67.92 0.68 -23.48 16 13 H 0.08 4.85 5.44 -2.91 -0.02 4.83 16 14 C 0.01 0.45 5.49 84.83 0.47 0.91 16 15 N -0.93 -56.67 13.96 21.61 0.30 -56.37 16 16 Si 0.97 45.87 28.62 68.60 1.96 47.84 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 20 C -0.19 -6.77 9.99 22.39 0.22 -6.55 16 21 C -0.06 -1.49 7.66 22.25 0.17 -1.32 16 22 C 0.03 0.42 5.00 87.14 0.44 0.85 16 23 C -0.59 -10.76 6.72 72.54 0.49 -10.27 16 24 S 2.42 53.31 4.89 -56.49 -0.28 53.03 16 25 O -1.01 -30.62 18.05 -127.27 -2.30 -32.92 16 26 O -0.97 -30.52 15.90 -127.27 -2.02 -32.55 16 27 C -0.60 -6.16 5.18 72.75 0.38 -5.78 16 28 H 0.07 0.34 8.13 -2.39 -0.02 0.32 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.17 8.14 -2.39 -0.02 0.16 16 31 H 0.09 0.25 6.49 -2.39 -0.02 0.23 16 32 H 0.09 0.67 7.53 -2.38 -0.02 0.65 16 33 H 0.08 0.90 8.02 -2.39 -0.02 0.88 16 34 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 36 H 0.10 5.10 5.64 -2.91 -0.02 5.08 16 37 H 0.28 15.94 8.31 -92.71 -0.77 15.17 16 38 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.17 2.63 7.40 -2.91 -0.02 2.61 16 40 H 0.10 1.49 3.88 -2.39 -0.01 1.48 16 41 H 0.11 0.50 6.27 -2.39 -0.01 0.49 16 42 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.17 0.37 7.80 -2.49 -0.02 0.35 16 45 H 0.15 1.23 8.10 -2.50 -0.02 1.21 16 Total: -1.00 -85.59 362.41 0.02 -85.57 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.00 Total: 15.76 kcal Atomic # 6 Polarization: -59.30 SS G_CDS: 4.69 Total: -54.60 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -2.84 Total: -68.59 kcal Atomic # 8 Polarization: -74.50 SS G_CDS: -4.52 Total: -79.01 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.96 Total: 47.84 kcal Atomic # 16 Polarization: 53.31 SS G_CDS: -0.28 Total: 53.03 kcal Total: -85.59 0.02 -85.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277526678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.134 kcal (2) G-P(sol) polarization free energy of solvation -85.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds