Wall clock time and date at job start Tue Mar 31 2020 23:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46750 * 2 1 4 4 N 1.46496 * 109.46812 * 119.99243 * 2 1 3 5 5 C 1.39676 * 120.00136 * 274.99874 * 4 2 1 6 6 C 1.39003 * 120.03867 * 0.02562 * 5 4 2 7 7 C 1.38154 * 120.05978 * 179.72093 * 6 5 4 8 8 C 1.38170 * 120.14124 * 0.23451 * 7 6 5 9 9 C 1.38915 * 120.08042 * 0.02562 * 8 7 6 10 10 O 1.35758 * 120.02759 * 180.02562 * 9 8 7 11 11 C 1.34834 * 116.99266 * 174.46205 * 10 9 8 12 12 H 1.07994 * 120.00630 * 5.06079 * 11 10 9 13 13 C 1.38661 * 119.99547 * 185.06002 * 11 10 9 14 14 N 1.31559 * 119.99953 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48510 * 109.47060 * 59.99815 * 15 13 11 17 17 H 1.48491 * 109.47114 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46966 * 300.00239 * 15 13 11 19 19 C 1.38758 * 120.03795 * 180.23868 * 5 4 2 20 20 C 1.52999 * 109.47126 * 239.99591 * 2 1 3 21 21 C 1.52591 * 109.23655 * 180.55555 * 20 2 1 22 22 C 1.53056 * 109.97397 * 169.67127 * 21 20 2 23 23 S 1.81671 * 108.96348 * 63.70866 * 22 21 20 24 24 O 1.42099 * 108.66362 * 191.35111 * 23 22 21 25 25 O 1.42097 * 108.66553 * 60.01215 * 23 22 21 26 26 C 1.81672 * 101.30883 * 305.68026 * 23 22 21 27 27 C 1.52584 * 109.24213 * 59.44367 * 20 2 1 28 28 H 1.08994 * 109.47564 * 300.00347 * 1 2 3 29 29 H 1.09002 * 109.47249 * 60.00556 * 1 2 3 30 30 H 1.09002 * 109.47364 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00146 * 95.01087 * 4 2 1 32 32 H 1.07992 * 119.96951 * 0.02562 * 6 5 4 33 33 H 1.07994 * 119.92478 * 180.25442 * 7 6 5 34 34 H 1.08002 * 119.95575 * 179.97438 * 8 7 6 35 35 H 0.96993 * 120.00262 * 180.02562 * 14 13 11 36 36 H 1.07995 * 120.07129 * 0.02562 * 19 5 4 37 37 H 1.08993 * 109.23828 * 299.99513 * 20 2 1 38 38 H 1.08999 * 109.39053 * 289.86617 * 21 20 2 39 39 H 1.09004 * 109.38720 * 49.55778 * 21 20 2 40 40 H 1.08999 * 109.58362 * 303.85353 * 22 21 20 41 41 H 1.09003 * 109.54825 * 183.53989 * 22 21 20 42 42 H 1.09003 * 109.54607 * 294.44545 * 26 23 22 43 43 H 1.08997 * 109.54956 * 174.15399 * 26 23 22 44 44 H 1.08995 * 109.38434 * 310.44131 * 27 20 2 45 45 H 1.09004 * 109.38574 * 70.12771 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6904 1.1963 5 6 2.1516 0.0065 2.3993 6 6 1.8208 1.3551 2.4626 7 6 1.9471 2.0434 3.6538 8 6 2.4069 1.3954 4.7842 9 6 2.7443 0.0491 4.7263 10 8 3.1955 -0.5866 5.8377 11 6 3.3957 -1.9167 5.7431 12 1 3.2768 -2.4145 4.7922 13 6 3.7544 -2.6453 6.8670 14 7 3.8998 -2.0388 8.0254 15 14 4.0326 -4.4878 6.7360 16 1 5.1283 -4.7555 5.7700 17 1 4.4047 -5.0281 8.0681 18 1 2.7865 -5.1443 6.2654 19 6 2.6187 -0.6455 3.5316 20 6 2.0400 -0.7213 -1.2492 21 6 3.5658 -0.7303 -1.2368 22 6 4.0921 -1.6609 -2.3321 23 16 3.5955 -1.0059 -3.9522 24 8 3.8508 -1.9948 -4.9402 25 8 4.1500 0.2933 -4.1069 26 6 1.7983 -0.8492 -3.7375 27 6 1.5171 -0.0062 -2.4915 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2491 -1.6316 1.1528 32 1 1.4601 1.8640 1.5811 33 1 1.6856 3.0902 3.7015 34 1 2.5049 1.9366 5.7137 35 1 4.1511 -2.5484 8.8115 36 1 2.8801 -1.6923 3.4842 37 1 1.6747 -1.7482 -1.2452 38 1 3.9351 0.2802 -1.4116 39 1 3.9177 -1.0797 -0.2661 40 1 3.6722 -2.6577 -2.1974 41 1 5.1795 -1.7110 -2.2767 42 1 1.3580 -1.8388 -3.6154 43 1 1.3676 -0.3621 -4.6122 44 1 0.4426 0.1487 -2.3944 45 1 2.0130 0.9596 -2.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280138935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:47 Heat of formation + Delta-G solvation = -75.874021 kcal Electronic energy + Delta-G solvation = -27296.959143 eV Core-core repulsion = 23407.219333 eV Total energy + Delta-G solvation = -3889.739810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.63987 -38.65084 -37.34330 -36.66911 -36.35578 -34.54276 -32.44219 -32.22635 -31.23695 -28.82620 -27.84194 -27.37901 -25.26695 -23.98881 -22.73042 -21.87888 -20.93975 -20.12212 -19.20058 -17.88449 -17.64144 -17.10337 -16.72346 -16.15027 -15.93785 -15.27430 -15.16325 -14.84389 -14.46992 -14.34427 -14.25708 -13.84390 -13.65693 -13.54078 -13.38035 -13.05815 -12.87247 -12.69846 -12.48428 -12.34638 -12.28845 -12.22194 -11.93051 -11.75778 -11.63360 -11.50535 -11.32402 -11.08508 -10.92374 -10.83459 -10.77785 -10.56411 -10.42511 -10.31905 -9.46400 -9.40415 -8.77800 -7.38706 -6.81352 -6.42972 -4.02462 -0.34427 2.29139 2.35635 2.53997 3.11604 3.13137 3.15808 3.28401 3.45181 3.61568 3.97124 4.08074 4.12177 4.21315 4.28127 4.52857 4.65185 4.68874 4.82204 4.88837 5.07504 5.14065 5.16539 5.23492 5.28223 5.35751 5.41064 5.45859 5.54864 5.64628 5.74098 5.80042 5.87072 5.96297 6.16702 6.25998 6.34710 6.61259 6.63018 7.00453 7.12470 7.37085 7.46109 7.63413 7.97428 8.02763 8.15208 9.02905 9.75635 10.75332 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.002683 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.348907 B =10434.640660 C =11690.584963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.161 3.839 3 H 0.084 0.916 4 N -0.749 5.749 5 C 0.250 3.750 6 C -0.280 4.280 7 C -0.040 4.040 8 C -0.236 4.236 9 C 0.189 3.811 10 O -0.178 6.178 11 C -0.390 4.390 12 H 0.090 0.910 13 C 0.039 3.961 14 N -0.864 5.864 15 Si 0.939 3.061 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.271 1.271 19 C -0.302 4.302 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.600 4.600 23 S 2.413 3.587 24 O -0.948 6.948 25 O -0.936 6.936 26 C -0.601 4.601 27 C -0.109 4.109 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.393 0.607 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.270 0.730 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.096 0.904 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 1.643 -21.916 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.055 3.945 3 H 0.102 0.898 4 N -0.381 5.381 5 C 0.150 3.850 6 C -0.302 4.302 7 C -0.059 4.059 8 C -0.257 4.257 9 C 0.135 3.865 10 O -0.081 6.081 11 C -0.466 4.466 12 H 0.107 0.893 13 C -0.165 4.165 14 N -0.499 5.499 15 Si 0.764 3.236 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.196 1.196 19 C -0.326 4.326 20 C -0.135 4.135 21 C -0.148 4.148 22 C -0.729 4.729 23 S 2.596 3.404 24 O -0.945 6.945 25 O -0.934 6.934 26 C -0.730 4.730 27 C -0.147 4.147 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.228 0.772 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.114 0.886 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.059 1.984 -22.304 22.957 hybrid contribution -0.298 -1.730 0.523 1.832 sum -5.356 0.255 -21.781 22.431 Atomic orbital electron populations 1.22407 0.96070 1.02381 1.02345 1.20662 0.93418 0.97009 0.83401 0.89780 1.44569 1.74709 1.11868 1.06938 1.17418 0.92039 0.90865 0.84725 1.20098 1.18186 0.93410 0.98543 1.20385 0.95827 0.97897 0.91819 1.20051 1.13023 0.93293 0.99309 1.19073 0.89274 0.91648 0.86543 1.83993 1.71376 1.22573 1.30174 1.21234 1.48483 0.80200 0.96701 0.89279 1.25267 0.96800 1.00192 0.94271 1.70026 1.43954 1.36481 0.99474 0.85815 0.78994 0.80835 0.77942 1.19626 1.20299 1.19621 1.20492 1.18146 1.01360 0.92570 1.21621 0.95304 1.01388 0.95179 1.21385 0.94473 0.99544 0.99381 1.30213 1.11984 1.10905 1.19826 1.08167 0.78820 0.75783 0.77669 1.93593 1.83803 1.61311 1.55808 1.93595 1.75827 1.38631 1.85312 1.30202 1.25678 1.09861 1.07303 1.21423 1.04922 0.98526 0.89871 0.91492 0.91949 0.92486 0.77236 0.87711 0.87260 0.86980 0.92034 0.85903 0.89559 0.89457 0.88385 0.84927 0.84646 0.84890 0.84734 0.88556 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.08 37.16 0.34 -1.16 16 2 C 0.16 1.48 1.84 -67.93 -0.13 1.35 16 3 H 0.08 0.82 6.48 -51.93 -0.34 0.48 16 4 N -0.75 -9.28 4.36 -52.18 -0.23 -9.51 16 5 C 0.25 4.25 6.63 -83.81 -0.56 3.70 16 6 C -0.28 -4.60 8.85 -39.33 -0.35 -4.94 16 7 C -0.04 -0.71 10.03 -39.64 -0.40 -1.11 16 8 C -0.24 -5.00 9.99 -39.36 -0.39 -5.40 16 9 C 0.19 4.54 6.64 -39.14 -0.26 4.28 16 10 O -0.18 -5.07 9.76 0.01 0.00 -5.07 16 11 C -0.39 -10.80 9.49 30.89 0.29 -10.51 16 12 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 13 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 14 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 15 Si 0.94 20.33 29.55 -169.99 -5.02 15.31 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 C -0.30 -6.32 9.01 -39.20 -0.35 -6.68 16 20 C -0.12 -0.76 1.59 -91.04 -0.14 -0.90 16 21 C -0.11 -0.80 4.98 -26.91 -0.13 -0.94 16 22 C -0.60 -3.58 6.35 37.19 0.24 -3.35 16 23 S 2.41 17.66 5.31 -107.50 -0.57 17.09 16 24 O -0.95 -10.39 18.10 -57.81 -1.05 -11.44 16 25 O -0.94 -10.25 17.94 -57.81 -1.04 -11.29 16 26 C -0.60 -2.71 6.35 37.18 0.24 -2.47 16 27 C -0.11 -0.57 4.90 -26.92 -0.13 -0.70 16 28 H 0.07 0.72 7.70 -51.93 -0.40 0.32 16 29 H 0.06 0.40 6.18 -51.93 -0.32 0.07 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.39 4.48 8.39 -40.82 -0.34 4.14 16 32 H 0.10 1.45 6.10 -52.49 -0.32 1.13 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.12 2.59 5.64 -52.49 -0.30 2.29 16 37 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.09 0.67 8.01 -51.93 -0.42 0.25 16 39 H 0.10 0.85 7.10 -51.93 -0.37 0.48 16 40 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.10 0.41 5.87 -51.93 -0.30 0.11 16 45 H 0.09 0.47 8.01 -51.93 -0.42 0.06 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -36.26 369.14 -9.73 -45.99 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.31 Total: 5.80 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -1.84 Total: -27.86 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.53 Total: -34.08 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -2.08 Total: -27.80 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 17.66 SS G_CDS: -0.57 Total: 17.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.26 -9.73 -45.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280138935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.888 kcal (2) G-P(sol) polarization free energy of solvation -36.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds