Wall clock time and date at job start Tue Mar 31 2020 23:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46750 * 2 1 4 4 N 1.46496 * 109.46812 * 119.99243 * 2 1 3 5 5 C 1.39676 * 120.00136 * 274.99874 * 4 2 1 6 6 C 1.39003 * 120.03867 * 0.02562 * 5 4 2 7 7 C 1.38154 * 120.05978 * 179.72093 * 6 5 4 8 8 C 1.38170 * 120.14124 * 0.23451 * 7 6 5 9 9 C 1.38915 * 120.08042 * 0.02562 * 8 7 6 10 10 O 1.35758 * 120.02759 * 180.02562 * 9 8 7 11 11 C 1.34834 * 116.99266 * 174.46205 * 10 9 8 12 12 H 1.07994 * 120.00630 * 5.06079 * 11 10 9 13 13 C 1.38661 * 119.99547 * 185.06002 * 11 10 9 14 14 N 1.31559 * 119.99953 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48510 * 109.47060 * 59.99815 * 15 13 11 17 17 H 1.48491 * 109.47114 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46966 * 300.00239 * 15 13 11 19 19 C 1.38758 * 120.03795 * 180.23868 * 5 4 2 20 20 C 1.52999 * 109.47126 * 239.99591 * 2 1 3 21 21 C 1.52591 * 109.23655 * 180.55555 * 20 2 1 22 22 C 1.53056 * 109.97397 * 169.67127 * 21 20 2 23 23 S 1.81671 * 108.96348 * 63.70866 * 22 21 20 24 24 O 1.42099 * 108.66362 * 191.35111 * 23 22 21 25 25 O 1.42097 * 108.66553 * 60.01215 * 23 22 21 26 26 C 1.81672 * 101.30883 * 305.68026 * 23 22 21 27 27 C 1.52584 * 109.24213 * 59.44367 * 20 2 1 28 28 H 1.08994 * 109.47564 * 300.00347 * 1 2 3 29 29 H 1.09002 * 109.47249 * 60.00556 * 1 2 3 30 30 H 1.09002 * 109.47364 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00146 * 95.01087 * 4 2 1 32 32 H 1.07992 * 119.96951 * 0.02562 * 6 5 4 33 33 H 1.07994 * 119.92478 * 180.25442 * 7 6 5 34 34 H 1.08002 * 119.95575 * 179.97438 * 8 7 6 35 35 H 0.96993 * 120.00262 * 180.02562 * 14 13 11 36 36 H 1.07995 * 120.07129 * 0.02562 * 19 5 4 37 37 H 1.08993 * 109.23828 * 299.99513 * 20 2 1 38 38 H 1.08999 * 109.39053 * 289.86617 * 21 20 2 39 39 H 1.09004 * 109.38720 * 49.55778 * 21 20 2 40 40 H 1.08999 * 109.58362 * 303.85353 * 22 21 20 41 41 H 1.09003 * 109.54825 * 183.53989 * 22 21 20 42 42 H 1.09003 * 109.54607 * 294.44545 * 26 23 22 43 43 H 1.08997 * 109.54956 * 174.15399 * 26 23 22 44 44 H 1.08995 * 109.38434 * 310.44131 * 27 20 2 45 45 H 1.09004 * 109.38574 * 70.12771 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6904 1.1963 5 6 2.1516 0.0065 2.3993 6 6 1.8208 1.3551 2.4626 7 6 1.9471 2.0434 3.6538 8 6 2.4069 1.3954 4.7842 9 6 2.7443 0.0491 4.7263 10 8 3.1955 -0.5866 5.8377 11 6 3.3957 -1.9167 5.7431 12 1 3.2768 -2.4145 4.7922 13 6 3.7544 -2.6453 6.8670 14 7 3.8998 -2.0388 8.0254 15 14 4.0326 -4.4878 6.7360 16 1 5.1283 -4.7555 5.7700 17 1 4.4047 -5.0281 8.0681 18 1 2.7865 -5.1443 6.2654 19 6 2.6187 -0.6455 3.5316 20 6 2.0400 -0.7213 -1.2492 21 6 3.5658 -0.7303 -1.2368 22 6 4.0921 -1.6609 -2.3321 23 16 3.5955 -1.0059 -3.9522 24 8 3.8508 -1.9948 -4.9402 25 8 4.1500 0.2933 -4.1069 26 6 1.7983 -0.8492 -3.7375 27 6 1.5171 -0.0062 -2.4915 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2491 -1.6316 1.1528 32 1 1.4601 1.8640 1.5811 33 1 1.6856 3.0902 3.7015 34 1 2.5049 1.9366 5.7137 35 1 4.1511 -2.5484 8.8115 36 1 2.8801 -1.6923 3.4842 37 1 1.6747 -1.7482 -1.2452 38 1 3.9351 0.2802 -1.4116 39 1 3.9177 -1.0797 -0.2661 40 1 3.6722 -2.6577 -2.1974 41 1 5.1795 -1.7110 -2.2767 42 1 1.3580 -1.8388 -3.6154 43 1 1.3676 -0.3621 -4.6122 44 1 0.4426 0.1487 -2.3944 45 1 2.0130 0.9596 -2.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280138935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:46 Heat of formation + Delta-G solvation = -102.639517 kcal Electronic energy + Delta-G solvation = -27298.119782 eV Core-core repulsion = 23407.219333 eV Total energy + Delta-G solvation = -3890.900449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87764 -39.84266 -38.29287 -37.86580 -37.04282 -35.64939 -34.18560 -32.97536 -32.21593 -30.38045 -29.10604 -28.01419 -27.19111 -24.53228 -23.61532 -23.36073 -22.02546 -21.12003 -19.80505 -19.62597 -19.00593 -17.90046 -17.28085 -17.16411 -16.87253 -16.66183 -16.36884 -15.94527 -15.68282 -15.51265 -15.33535 -14.90719 -14.81935 -14.47795 -14.38845 -14.11716 -13.94497 -13.60557 -13.49867 -13.40444 -13.19758 -13.05713 -12.93193 -12.71556 -12.65621 -12.52403 -12.40684 -12.18324 -12.14668 -11.99762 -11.93351 -11.55388 -11.41660 -11.24171 -10.96165 -10.79786 -10.55072 -9.06585 -8.43617 -8.16559 -6.11851 -0.87845 0.80754 0.96585 1.34604 1.46408 1.51217 1.79899 2.19469 2.54878 2.76640 2.91898 2.98687 3.30403 3.56954 3.61000 3.63389 3.70218 3.81941 4.07695 4.18594 4.22318 4.30426 4.39243 4.45435 4.52475 4.59906 4.66141 4.72893 4.78109 4.81469 4.91078 4.94920 5.02143 5.04989 5.13762 5.18182 5.19047 5.24356 5.37566 5.50916 5.54261 5.78973 5.85497 6.07088 6.15530 6.66951 6.95419 7.02069 7.86600 8.80095 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013987 B = 0.002683 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.348907 B =10434.640660 C =11690.584963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.154 3.846 3 H 0.084 0.916 4 N -0.736 5.736 5 C 0.263 3.737 6 C -0.263 4.263 7 C -0.029 4.029 8 C -0.266 4.266 9 C 0.151 3.849 10 O -0.235 6.235 11 C -0.409 4.409 12 H 0.101 0.899 13 C -0.026 4.026 14 N -0.924 5.924 15 Si 1.018 2.982 16 H -0.257 1.257 17 H -0.274 1.274 18 H -0.257 1.257 19 C -0.316 4.316 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.592 4.592 23 S 2.412 3.588 24 O -0.991 6.991 25 O -0.982 6.982 26 C -0.578 4.578 27 C -0.111 4.111 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.400 0.600 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.101 0.899 35 H 0.271 0.729 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.157 0.843 41 H 0.135 0.865 42 H 0.162 0.838 43 H 0.153 0.847 44 H 0.118 0.882 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 1.136 -25.467 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.050 3.950 3 H 0.102 0.898 4 N -0.366 5.366 5 C 0.159 3.841 6 C -0.285 4.285 7 C -0.047 4.047 8 C -0.287 4.287 9 C 0.100 3.900 10 O -0.142 6.142 11 C -0.485 4.485 12 H 0.118 0.882 13 C -0.222 4.222 14 N -0.563 5.563 15 Si 0.837 3.163 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.181 1.181 19 C -0.340 4.340 20 C -0.130 4.130 21 C -0.153 4.153 22 C -0.723 4.723 23 S 2.599 3.401 24 O -0.988 6.988 25 O -0.979 6.979 26 C -0.711 4.711 27 C -0.150 4.150 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.235 0.765 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.175 0.825 41 H 0.154 0.846 42 H 0.180 0.820 43 H 0.171 0.829 44 H 0.136 0.864 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.241 1.496 -25.972 27.004 hybrid contribution 0.231 -1.352 1.351 1.925 sum -7.010 0.144 -24.621 25.600 Atomic orbital electron populations 1.22391 0.94884 1.02854 1.02849 1.20955 0.94205 0.97039 0.82831 0.89805 1.44733 1.73253 1.12236 1.06378 1.17460 0.90087 0.91344 0.85209 1.20585 1.15598 0.93005 0.99334 1.20817 0.93591 0.99602 0.90707 1.20245 1.15112 0.92686 1.00651 1.19653 0.90698 0.92897 0.86764 1.83954 1.74369 1.23111 1.32717 1.21757 1.48559 0.80669 0.97551 0.88170 1.26589 0.96308 1.05789 0.93557 1.70188 1.46770 1.38783 1.00554 0.84664 0.79627 0.73699 0.78306 1.18164 1.19832 1.18108 1.20511 1.19259 1.01086 0.93149 1.21613 0.94370 1.02554 0.94421 1.21398 0.95466 0.99465 0.98933 1.30126 1.12381 1.11795 1.17962 1.07923 0.80423 0.74206 0.77500 1.93539 1.85350 1.62087 1.57869 1.93536 1.77883 1.40356 1.86145 1.30023 1.21377 1.11793 1.07900 1.21492 1.06099 0.98359 0.89045 0.93560 0.88925 0.92105 0.76497 0.83793 0.83435 0.88081 0.91978 0.86828 0.87369 0.90157 0.89795 0.82493 0.84648 0.82029 0.82855 0.86368 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.08 71.98 0.65 -1.44 16 2 C 0.15 2.15 1.84 44.99 0.08 2.23 16 3 H 0.08 1.22 6.48 -2.38 -0.02 1.21 16 4 N -0.74 -16.00 4.36 -319.01 -1.39 -17.39 16 5 C 0.26 8.45 6.63 38.20 0.25 8.70 16 6 C -0.26 -7.79 8.85 22.43 0.20 -7.59 16 7 C -0.03 -0.95 10.03 22.23 0.22 -0.73 16 8 C -0.27 -11.63 9.99 22.42 0.22 -11.40 16 9 C 0.15 7.61 6.64 22.56 0.15 7.76 16 10 O -0.24 -14.38 9.76 -22.88 -0.22 -14.60 16 11 C -0.41 -23.94 9.49 67.92 0.64 -23.29 16 12 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 13 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 14 N -0.92 -57.41 13.67 21.62 0.30 -57.12 16 15 Si 1.02 42.74 29.55 68.60 2.03 44.77 16 16 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 19 C -0.32 -13.45 9.01 22.52 0.20 -13.25 16 20 C -0.11 -0.94 1.59 -11.07 -0.02 -0.96 16 21 C -0.11 -1.36 4.98 30.48 0.15 -1.21 16 22 C -0.59 -5.66 6.35 72.00 0.46 -5.20 16 23 S 2.41 30.74 5.31 -56.49 -0.30 30.44 16 24 O -0.99 -20.66 18.10 -127.39 -2.31 -22.97 16 25 O -0.98 -20.77 17.94 -127.39 -2.29 -23.06 16 26 C -0.58 -2.52 6.35 72.00 0.46 -2.06 16 27 C -0.11 -0.59 4.90 30.47 0.15 -0.45 16 28 H 0.05 0.78 7.70 -2.39 -0.02 0.77 16 29 H 0.09 0.60 6.18 -2.39 -0.01 0.59 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.40 7.98 8.39 -92.71 -0.78 7.20 16 32 H 0.14 3.20 6.10 -2.91 -0.02 3.19 16 33 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.11 4.93 5.64 -2.91 -0.02 4.91 16 37 H 0.11 0.52 8.09 -2.39 -0.02 0.50 16 38 H 0.08 1.07 8.01 -2.39 -0.02 1.05 16 39 H 0.08 1.27 7.10 -2.38 -0.02 1.25 16 40 H 0.16 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.12 0.23 5.87 -2.39 -0.01 0.21 16 45 H 0.09 0.56 8.01 -2.39 -0.02 0.54 16 Total: -1.00 -86.81 369.14 0.35 -86.46 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.24 Total: 23.34 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 4.30 Total: -49.87 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.10 Total: -74.51 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -4.81 Total: -60.62 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 30.74 SS G_CDS: -0.30 Total: 30.44 kcal Total: -86.81 0.35 -86.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280138935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.181 kcal (2) G-P(sol) polarization free energy of solvation -86.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds