Wall clock time and date at job start Tue Mar 31 2020 23:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47230 * 2 1 4 4 N 1.46501 * 109.47208 * 239.99516 * 2 1 3 5 5 C 1.39673 * 119.99771 * 85.00492 * 4 2 1 6 6 C 1.39006 * 120.03828 * 359.97438 * 5 4 2 7 7 C 1.38156 * 120.06050 * 180.02562 * 6 5 4 8 8 C 1.38169 * 120.14007 * 0.02562 * 7 6 5 9 9 C 1.38916 * 120.08045 * 359.97438 * 8 7 6 10 10 O 1.35747 * 120.03003 * 179.97438 * 9 8 7 11 11 C 1.34832 * 117.00007 * 174.48127 * 10 9 8 12 12 H 1.07999 * 120.00051 * 5.05949 * 11 10 9 13 13 C 1.38649 * 120.00134 * 185.05818 * 11 10 9 14 14 N 1.31561 * 120.00366 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00085 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47280 * 89.99697 * 15 13 11 17 17 H 1.48504 * 109.47307 * 209.99868 * 15 13 11 18 18 H 1.48501 * 109.46992 * 329.99842 * 15 13 11 19 19 C 1.38747 * 120.03940 * 180.02562 * 5 4 2 20 20 C 1.53005 * 109.47120 * 119.99714 * 2 1 3 21 21 C 1.52587 * 109.24170 * 60.55540 * 20 2 1 22 22 C 1.53053 * 109.97445 * 169.67336 * 21 20 2 23 23 S 1.81673 * 108.96572 * 63.71021 * 22 21 20 24 24 O 1.42096 * 108.66372 * 191.34847 * 23 22 21 25 25 O 1.42106 * 108.66105 * 60.00960 * 23 22 21 26 26 C 1.81664 * 101.30696 * 305.68196 * 23 22 21 27 27 C 1.52594 * 109.24010 * 299.44426 * 20 2 1 28 28 H 1.09003 * 109.47002 * 60.00377 * 1 2 3 29 29 H 1.08996 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46930 * 300.00450 * 1 2 3 31 31 H 0.96999 * 120.00245 * 264.99545 * 4 2 1 32 32 H 1.07999 * 119.97574 * 359.74590 * 6 5 4 33 33 H 1.07994 * 119.92932 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.95740 * 179.97438 * 8 7 6 35 35 H 0.97001 * 120.00190 * 180.02562 * 14 13 11 36 36 H 1.08004 * 120.06918 * 359.94727 * 19 5 4 37 37 H 1.08998 * 109.24025 * 180.02562 * 20 2 1 38 38 H 1.08996 * 109.38614 * 289.87322 * 21 20 2 39 39 H 1.09001 * 109.38585 * 49.56011 * 21 20 2 40 40 H 1.08999 * 109.58429 * 303.85688 * 22 21 20 41 41 H 1.08999 * 109.62790 * 183.58942 * 22 21 20 42 42 H 1.09002 * 109.54904 * 294.43977 * 26 23 22 43 43 H 1.09004 * 109.55409 * 174.15410 * 26 23 22 44 44 H 1.08999 * 109.38455 * 310.43967 * 27 20 2 45 45 H 1.08995 * 109.38620 * 70.12729 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1519 0.0060 -2.3993 6 6 1.8211 1.3547 -2.4627 7 6 1.9524 2.0442 -3.6527 8 6 2.4122 1.3960 -4.7830 9 6 2.7444 0.0483 -4.7262 10 8 3.1955 -0.5876 -5.8374 11 6 3.6081 -1.8625 -5.6881 12 1 3.4947 -2.3587 -4.7355 13 6 4.1780 -2.5365 -6.7573 14 7 4.5802 -3.7807 -6.6118 15 14 4.3748 -1.6781 -8.4047 16 1 5.6930 -0.9959 -8.4531 17 1 4.2957 -2.6803 -9.4977 18 1 3.2922 -0.6756 -8.5729 19 6 2.6138 -0.6474 -3.5327 20 6 2.0400 -0.7212 1.2493 21 6 1.5400 -2.1628 1.2371 22 6 2.2418 -2.9689 2.3326 23 16 1.7897 -2.2822 3.9526 24 8 2.6368 -2.8525 4.9407 25 8 0.3799 -2.3720 4.1071 26 6 2.2408 -0.5357 3.7376 27 6 1.5399 0.0103 2.4916 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.2491 -1.6318 -1.1525 32 1 1.4567 1.8629 -1.5822 33 1 1.6952 3.0920 -3.6996 34 1 2.5133 1.9377 -5.7118 35 1 4.9792 -4.2521 -7.3598 36 1 2.8715 -1.6952 -3.4861 37 1 3.1300 -0.7186 1.2457 38 1 0.4641 -2.1740 1.4117 39 1 1.7521 -2.6111 0.2665 40 1 3.3216 -2.9053 2.1980 41 1 1.9282 -4.0114 2.2779 42 1 3.3206 -0.4502 3.6157 43 1 1.9251 0.0330 4.6123 44 1 1.7521 1.0750 2.3944 45 1 0.4641 -0.1353 2.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280138941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:51 Heat of formation + Delta-G solvation = -73.328621 kcal Electronic energy + Delta-G solvation = -27283.676942 eV Core-core repulsion = 23394.047509 eV Total energy + Delta-G solvation = -3889.629433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.78153 -38.83927 -37.36574 -36.81577 -36.36583 -34.55213 -32.35970 -32.32937 -31.30531 -29.06790 -27.90848 -27.24242 -25.19980 -24.17081 -23.37518 -21.76527 -20.95649 -19.64488 -19.13529 -17.94901 -17.65365 -17.22644 -16.75589 -16.21048 -15.96831 -15.54783 -15.25856 -14.88143 -14.49824 -14.44189 -14.04903 -13.82041 -13.70734 -13.59262 -13.47717 -13.13777 -12.97917 -12.60548 -12.47220 -12.35497 -12.34562 -12.24014 -12.08404 -11.97344 -11.72697 -11.61902 -11.24487 -11.11819 -10.90713 -10.83097 -10.73910 -10.58368 -10.38138 -10.21422 -9.53975 -9.44173 -8.83593 -7.51282 -6.90807 -6.41393 -4.08271 -0.35275 2.25337 2.28049 2.41925 3.22212 3.25849 3.27463 3.40926 3.45707 3.59919 4.04032 4.11398 4.22386 4.24277 4.26386 4.48799 4.58529 4.61401 4.83055 4.89664 4.93032 5.02137 5.12198 5.13742 5.24466 5.28297 5.39713 5.44227 5.52768 5.59038 5.69510 5.76588 5.79804 5.88969 6.11169 6.19613 6.28378 6.47653 6.52534 6.91475 7.18217 7.24392 7.48137 7.77661 7.87369 8.01075 8.13266 8.94793 9.59167 10.66441 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.002496 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.237379 B =11215.526067 C =12433.163470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.162 3.838 3 H 0.084 0.916 4 N -0.749 5.749 5 C 0.250 3.750 6 C -0.273 4.273 7 C -0.041 4.041 8 C -0.238 4.238 9 C 0.196 3.804 10 O -0.218 6.218 11 C -0.387 4.387 12 H 0.105 0.895 13 C 0.062 3.938 14 N -0.882 5.882 15 Si 0.905 3.095 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.259 1.259 19 C -0.291 4.291 20 C -0.117 4.117 21 C -0.111 4.111 22 C -0.601 4.601 23 S 2.414 3.586 24 O -0.947 6.947 25 O -0.937 6.937 26 C -0.602 4.602 27 C -0.105 4.105 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.395 0.605 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.279 0.721 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.092 0.908 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 7.376 19.338 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.056 3.944 3 H 0.102 0.898 4 N -0.382 5.382 5 C 0.149 3.851 6 C -0.296 4.296 7 C -0.060 4.060 8 C -0.258 4.258 9 C 0.143 3.857 10 O -0.123 6.123 11 C -0.462 4.462 12 H 0.122 0.878 13 C -0.140 4.140 14 N -0.521 5.521 15 Si 0.730 3.270 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.183 1.183 19 C -0.314 4.314 20 C -0.136 4.136 21 C -0.149 4.149 22 C -0.731 4.731 23 S 2.596 3.404 24 O -0.944 6.944 25 O -0.934 6.934 26 C -0.732 4.732 27 C -0.143 4.143 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.110 0.890 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.098 6.937 19.862 21.905 hybrid contribution 0.760 0.020 -1.267 1.478 sum -5.337 6.956 18.595 20.558 Atomic orbital electron populations 1.22460 0.96005 1.02786 1.02445 1.20685 0.93682 0.96593 0.83405 0.89803 1.44710 1.74474 1.12072 1.06925 1.17451 0.91862 0.90863 0.84945 1.20160 1.17377 0.93419 0.98633 1.20380 0.95811 0.98009 0.91803 1.20036 1.13683 0.92671 0.99437 1.18803 0.90452 0.90851 0.85605 1.83585 1.71293 1.27726 1.29646 1.20737 1.39604 0.84767 1.01124 0.87763 1.24461 0.95266 0.95135 0.99180 1.69645 1.39625 1.09728 1.33067 0.86190 0.79654 0.79460 0.81651 1.19931 1.20868 1.18325 1.20608 1.16751 1.01622 0.92469 1.21631 1.02221 0.94604 0.95156 1.21434 1.00907 0.93555 0.99033 1.30220 1.11410 1.11664 1.19784 1.08143 0.75813 0.78787 0.77647 1.93598 1.69216 1.75852 1.55709 1.93593 1.28887 1.85622 1.85323 1.30216 1.11337 1.24289 1.07324 1.21350 1.00822 1.02272 0.89879 0.91586 0.91990 0.91867 0.76935 0.87523 0.87093 0.86983 0.91135 0.85276 0.89143 0.89100 0.89015 0.84705 0.84567 0.84774 0.84690 0.88976 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.75 37.16 0.33 -1.25 16 2 C 0.16 1.49 2.05 -67.93 -0.14 1.35 16 3 H 0.08 0.78 6.49 -51.93 -0.34 0.44 16 4 N -0.75 -9.48 5.16 -52.18 -0.27 -9.75 16 5 C 0.25 4.21 6.63 -83.81 -0.56 3.65 16 6 C -0.27 -4.30 8.85 -39.33 -0.35 -4.65 16 7 C -0.04 -0.68 10.03 -39.64 -0.40 -1.08 16 8 C -0.24 -4.68 9.99 -39.36 -0.39 -5.07 16 9 C 0.20 4.47 6.64 -39.14 -0.26 4.21 16 10 O -0.22 -5.72 8.58 0.05 0.00 -5.72 16 11 C -0.39 -10.78 9.94 30.88 0.31 -10.47 16 12 H 0.11 2.96 5.43 -52.49 -0.29 2.67 16 13 C 0.06 1.74 5.49 -17.52 -0.10 1.64 16 14 N -0.88 -25.27 13.96 55.48 0.77 -24.50 16 15 Si 0.90 21.59 28.62 -169.99 -4.86 16.73 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.29 -6.05 9.01 -39.20 -0.35 -6.41 16 20 C -0.12 -0.78 1.93 -91.04 -0.18 -0.96 16 21 C -0.11 -0.76 4.32 -26.92 -0.12 -0.88 16 22 C -0.60 -3.54 6.35 37.19 0.24 -3.30 16 23 S 2.41 17.59 5.31 -107.50 -0.57 17.02 16 24 O -0.95 -10.46 18.10 -57.81 -1.05 -11.51 16 25 O -0.94 -9.97 17.94 -57.81 -1.04 -11.01 16 26 C -0.60 -2.79 6.35 37.18 0.24 -2.56 16 27 C -0.10 -0.55 4.38 -26.92 -0.12 -0.66 16 28 H 0.07 0.70 7.69 -51.93 -0.40 0.30 16 29 H 0.06 0.55 6.66 -51.93 -0.35 0.20 16 30 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 31 H 0.39 4.74 6.72 -40.82 -0.27 4.47 16 32 H 0.11 1.39 6.09 -52.49 -0.32 1.07 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 35 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 37 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 38 H 0.09 0.61 6.85 -51.93 -0.36 0.25 16 39 H 0.09 0.68 6.16 -51.93 -0.32 0.36 16 40 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.14 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.40 8.10 -51.93 -0.42 -0.02 16 45 H 0.09 0.46 6.85 -51.93 -0.36 0.11 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -35.22 364.13 -9.52 -44.74 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.15 Total: 4.93 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -1.85 Total: -26.43 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.51 Total: -34.25 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -2.08 Total: -28.23 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.73 kcal Atomic # 16 Polarization: 17.59 SS G_CDS: -0.57 Total: 17.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.22 -9.52 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280138941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.584 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds