Wall clock time and date at job start Tue Mar 31 2020 23:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47230 * 2 1 4 4 N 1.46501 * 109.47208 * 239.99516 * 2 1 3 5 5 C 1.39673 * 119.99771 * 85.00492 * 4 2 1 6 6 C 1.39006 * 120.03828 * 359.97438 * 5 4 2 7 7 C 1.38156 * 120.06050 * 180.02562 * 6 5 4 8 8 C 1.38169 * 120.14007 * 0.02562 * 7 6 5 9 9 C 1.38916 * 120.08045 * 359.97438 * 8 7 6 10 10 O 1.35747 * 120.03003 * 179.97438 * 9 8 7 11 11 C 1.34832 * 117.00007 * 174.48127 * 10 9 8 12 12 H 1.07999 * 120.00051 * 5.05949 * 11 10 9 13 13 C 1.38649 * 120.00134 * 185.05818 * 11 10 9 14 14 N 1.31561 * 120.00366 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00085 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47280 * 89.99697 * 15 13 11 17 17 H 1.48504 * 109.47307 * 209.99868 * 15 13 11 18 18 H 1.48501 * 109.46992 * 329.99842 * 15 13 11 19 19 C 1.38747 * 120.03940 * 180.02562 * 5 4 2 20 20 C 1.53005 * 109.47120 * 119.99714 * 2 1 3 21 21 C 1.52587 * 109.24170 * 60.55540 * 20 2 1 22 22 C 1.53053 * 109.97445 * 169.67336 * 21 20 2 23 23 S 1.81673 * 108.96572 * 63.71021 * 22 21 20 24 24 O 1.42096 * 108.66372 * 191.34847 * 23 22 21 25 25 O 1.42106 * 108.66105 * 60.00960 * 23 22 21 26 26 C 1.81664 * 101.30696 * 305.68196 * 23 22 21 27 27 C 1.52594 * 109.24010 * 299.44426 * 20 2 1 28 28 H 1.09003 * 109.47002 * 60.00377 * 1 2 3 29 29 H 1.08996 * 109.46812 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46930 * 300.00450 * 1 2 3 31 31 H 0.96999 * 120.00245 * 264.99545 * 4 2 1 32 32 H 1.07999 * 119.97574 * 359.74590 * 6 5 4 33 33 H 1.07994 * 119.92932 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.95740 * 179.97438 * 8 7 6 35 35 H 0.97001 * 120.00190 * 180.02562 * 14 13 11 36 36 H 1.08004 * 120.06918 * 359.94727 * 19 5 4 37 37 H 1.08998 * 109.24025 * 180.02562 * 20 2 1 38 38 H 1.08996 * 109.38614 * 289.87322 * 21 20 2 39 39 H 1.09001 * 109.38585 * 49.56011 * 21 20 2 40 40 H 1.08999 * 109.58429 * 303.85688 * 22 21 20 41 41 H 1.08999 * 109.62790 * 183.58942 * 22 21 20 42 42 H 1.09002 * 109.54904 * 294.43977 * 26 23 22 43 43 H 1.09004 * 109.55409 * 174.15410 * 26 23 22 44 44 H 1.08999 * 109.38455 * 310.43967 * 27 20 2 45 45 H 1.08995 * 109.38620 * 70.12729 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1519 0.0060 -2.3993 6 6 1.8211 1.3547 -2.4627 7 6 1.9524 2.0442 -3.6527 8 6 2.4122 1.3960 -4.7830 9 6 2.7444 0.0483 -4.7262 10 8 3.1955 -0.5876 -5.8374 11 6 3.6081 -1.8625 -5.6881 12 1 3.4947 -2.3587 -4.7355 13 6 4.1780 -2.5365 -6.7573 14 7 4.5802 -3.7807 -6.6118 15 14 4.3748 -1.6781 -8.4047 16 1 5.6930 -0.9959 -8.4531 17 1 4.2957 -2.6803 -9.4977 18 1 3.2922 -0.6756 -8.5729 19 6 2.6138 -0.6474 -3.5327 20 6 2.0400 -0.7212 1.2493 21 6 1.5400 -2.1628 1.2371 22 6 2.2418 -2.9689 2.3326 23 16 1.7897 -2.2822 3.9526 24 8 2.6368 -2.8525 4.9407 25 8 0.3799 -2.3720 4.1071 26 6 2.2408 -0.5357 3.7376 27 6 1.5399 0.0103 2.4916 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.2491 -1.6318 -1.1525 32 1 1.4567 1.8629 -1.5822 33 1 1.6952 3.0920 -3.6996 34 1 2.5133 1.9377 -5.7118 35 1 4.9792 -4.2521 -7.3598 36 1 2.8715 -1.6952 -3.4861 37 1 3.1300 -0.7186 1.2457 38 1 0.4641 -2.1740 1.4117 39 1 1.7521 -2.6111 0.2665 40 1 3.3216 -2.9053 2.1980 41 1 1.9282 -4.0114 2.2779 42 1 3.3206 -0.4502 3.6157 43 1 1.9251 0.0330 4.6123 44 1 1.7521 1.0750 2.3944 45 1 0.4641 -0.1353 2.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280138941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:50 Heat of formation + Delta-G solvation = -98.901220 kcal Electronic energy + Delta-G solvation = -27284.785854 eV Core-core repulsion = 23394.047509 eV Total energy + Delta-G solvation = -3890.738344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.98424 -40.01667 -38.38242 -37.91246 -37.06142 -35.62484 -34.36440 -32.82096 -32.30456 -30.57083 -29.16439 -27.88114 -27.08469 -24.71163 -24.17568 -23.27006 -22.15314 -20.54202 -19.78890 -19.65078 -19.12763 -17.92020 -17.34711 -17.32816 -16.85897 -16.67534 -16.37702 -16.15052 -15.64305 -15.49061 -15.37440 -15.05928 -14.84862 -14.65620 -14.26091 -14.10070 -13.94974 -13.91015 -13.83177 -13.23534 -13.13088 -13.09095 -13.03406 -12.96141 -12.61998 -12.55370 -12.50354 -12.27743 -12.13825 -11.93479 -11.75953 -11.66187 -11.39165 -11.30140 -10.97991 -10.89088 -10.63163 -9.14518 -8.47956 -8.20370 -6.19740 -0.89875 0.77548 0.92236 1.31924 1.36384 1.52834 1.77308 2.29519 2.53396 2.74277 2.84199 2.96900 3.18303 3.29014 3.53006 3.59237 3.69496 3.77913 4.02963 4.11992 4.23489 4.33706 4.36422 4.42141 4.47812 4.54910 4.62575 4.70429 4.78020 4.80093 4.89763 4.94979 4.96587 5.02649 5.08170 5.11284 5.22282 5.28951 5.47085 5.49751 5.52780 5.79678 5.87216 5.93913 6.20620 6.65433 6.87749 6.88122 7.66160 8.63743 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.002496 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.237379 B =11215.526067 C =12433.163470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.157 3.843 3 H 0.097 0.903 4 N -0.742 5.742 5 C 0.257 3.743 6 C -0.255 4.255 7 C -0.028 4.028 8 C -0.254 4.254 9 C 0.157 3.843 10 O -0.248 6.248 11 C -0.393 4.393 12 H 0.080 0.920 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.969 3.031 16 H -0.266 1.266 17 H -0.269 1.269 18 H -0.264 1.264 19 C -0.314 4.314 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.595 4.595 23 S 2.414 3.586 24 O -0.991 6.991 25 O -0.978 6.978 26 C -0.581 4.581 27 C -0.107 4.107 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.396 0.604 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.283 0.717 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.153 0.847 41 H 0.139 0.861 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.115 0.885 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.318 10.858 21.002 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.053 3.947 3 H 0.114 0.886 4 N -0.372 5.372 5 C 0.153 3.847 6 C -0.277 4.277 7 C -0.047 4.047 8 C -0.275 4.275 9 C 0.107 3.893 10 O -0.155 6.155 11 C -0.470 4.470 12 H 0.097 0.903 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.193 1.193 18 H -0.188 1.188 19 C -0.337 4.337 20 C -0.132 4.132 21 C -0.155 4.155 22 C -0.726 4.726 23 S 2.601 3.399 24 O -0.989 6.989 25 O -0.975 6.975 26 C -0.714 4.714 27 C -0.146 4.146 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.232 0.768 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.176 0.824 43 H 0.173 0.827 44 H 0.134 0.866 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.655 10.402 21.617 24.895 hybrid contribution 0.783 -0.893 -1.481 1.899 sum -5.871 9.510 20.135 23.029 Atomic orbital electron populations 1.22469 0.95505 1.02725 1.03035 1.20992 0.94008 0.97098 0.82645 0.88550 1.44949 1.73200 1.12296 1.06780 1.17541 0.90385 0.91639 0.85114 1.20662 1.14700 0.92542 0.99837 1.20890 0.93359 0.99898 0.90519 1.20307 1.14576 0.91434 1.01217 1.19415 0.91832 0.92384 0.85638 1.83525 1.73705 1.26810 1.31502 1.20680 1.39883 0.85915 1.00498 0.90254 1.25253 0.95232 0.95830 1.02608 1.69728 1.41559 1.11072 1.34332 0.85239 0.79488 0.78442 0.77679 1.19107 1.19332 1.18837 1.20578 1.18607 1.00667 0.93898 1.21621 1.02877 0.93994 0.94705 1.21481 1.01188 0.94173 0.98699 1.30146 1.12478 1.11775 1.18172 1.07870 0.74417 0.80185 0.77407 1.93541 1.69701 1.77784 1.57831 1.93537 1.31074 1.86823 1.86081 1.30044 1.12877 1.20362 1.08078 1.21427 1.01033 1.03281 0.88814 0.93127 0.92561 0.89093 0.76832 0.83462 0.82706 0.86505 0.90729 0.88042 0.88058 0.89092 0.90011 0.82939 0.84325 0.82397 0.82704 0.86632 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.75 71.98 0.63 -1.91 16 2 C 0.16 2.28 2.05 44.99 0.09 2.37 16 3 H 0.10 1.23 6.49 -2.39 -0.02 1.22 16 4 N -0.74 -17.38 5.16 -319.00 -1.64 -19.02 16 5 C 0.26 8.27 6.63 38.20 0.25 8.52 16 6 C -0.25 -6.99 8.85 22.43 0.20 -6.79 16 7 C -0.03 -0.82 10.03 22.23 0.22 -0.60 16 8 C -0.25 -9.78 9.99 22.42 0.22 -9.56 16 9 C 0.16 7.39 6.64 22.56 0.15 7.54 16 10 O -0.25 -13.65 8.58 -22.73 -0.20 -13.85 16 11 C -0.39 -23.31 9.94 67.92 0.68 -22.63 16 12 H 0.08 4.92 5.43 -2.91 -0.02 4.90 16 13 C 0.01 0.50 5.49 84.83 0.47 0.97 16 14 N -0.93 -55.44 13.96 21.61 0.30 -55.14 16 15 Si 0.97 45.87 28.62 68.60 1.96 47.83 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 19 C -0.31 -13.50 9.01 22.52 0.20 -13.30 16 20 C -0.11 -1.10 1.93 -11.06 -0.02 -1.12 16 21 C -0.12 -1.39 4.32 30.48 0.13 -1.26 16 22 C -0.60 -6.20 6.35 72.00 0.46 -5.74 16 23 S 2.41 32.12 5.31 -56.49 -0.30 31.82 16 24 O -0.99 -21.54 18.10 -127.40 -2.31 -23.84 16 25 O -0.98 -20.30 17.94 -127.40 -2.29 -22.59 16 26 C -0.58 -3.10 6.35 71.99 0.46 -2.65 16 27 C -0.11 -0.62 4.38 30.47 0.13 -0.49 16 28 H 0.05 0.89 7.69 -2.39 -0.02 0.87 16 29 H 0.06 0.87 6.66 -2.39 -0.02 0.86 16 30 H 0.09 0.81 6.66 -2.39 -0.02 0.80 16 31 H 0.40 9.30 6.72 -92.71 -0.62 8.67 16 32 H 0.15 2.91 6.09 -2.91 -0.02 2.89 16 33 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 34 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.10 4.87 5.64 -2.91 -0.02 4.85 16 37 H 0.10 0.83 8.09 -2.39 -0.02 0.81 16 38 H 0.09 1.08 6.85 -2.39 -0.02 1.07 16 39 H 0.08 1.15 6.16 -2.39 -0.01 1.14 16 40 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.12 0.27 8.10 -2.39 -0.02 0.25 16 45 H 0.09 0.56 6.85 -2.39 -0.02 0.54 16 Total: -1.00 -82.01 364.13 0.21 -81.80 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.40 Total: 19.64 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 4.27 Total: -46.65 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -1.34 Total: -74.16 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -4.79 Total: -60.28 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.96 Total: 47.83 kcal Atomic # 16 Polarization: 32.12 SS G_CDS: -0.30 Total: 31.82 kcal Total: -82.01 0.21 -81.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280138941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.103 kcal (2) G-P(sol) polarization free energy of solvation -82.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds