Wall clock time and date at job start Tue Mar 31 2020 23:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.72640 * 2 1 4 4 C 1.53182 * 109.60374 * 239.59903 * 2 1 3 5 5 N 1.46472 * 109.90080 * 177.60331 * 4 2 1 6 6 C 1.46897 * 111.00072 * 196.99760 * 5 4 2 7 7 C 1.50699 * 109.47285 * 169.99943 * 6 5 4 8 8 C 1.38305 * 119.92854 * 269.73009 * 7 6 5 9 9 C 1.38102 * 120.06542 * 179.72721 * 8 7 6 10 10 C 1.38877 * 119.93059 * 0.53568 * 9 8 7 11 11 O 1.35750 * 120.06987 * 179.75098 * 10 9 8 12 12 C 1.34832 * 117.00252 * 174.44412 * 11 10 9 13 13 H 1.08005 * 119.99636 * 5.06143 * 12 11 10 14 14 C 1.38652 * 120.00240 * 185.05415 * 12 11 10 15 15 N 1.31560 * 120.00391 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99830 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46849 * 89.99870 * 16 14 12 18 18 H 1.48504 * 109.46996 * 209.99818 * 16 14 12 19 19 H 1.48492 * 109.47181 * 329.99628 * 16 14 12 20 20 C 1.38877 * 119.86502 * 359.73665 * 10 9 8 21 21 C 1.38105 * 119.92883 * 359.97438 * 20 10 9 22 22 C 1.46456 * 112.61562 * 71.89846 * 5 4 2 23 23 C 1.53175 * 109.91173 * 288.28577 * 22 5 4 24 24 H 1.08997 * 109.60364 * 302.54139 * 23 22 5 25 25 C 1.53005 * 109.60105 * 182.22120 * 23 22 5 26 26 S 1.81812 * 108.81387 * 62.38257 * 23 22 5 27 27 O 1.42097 * 108.70648 * 62.01937 * 26 23 22 28 28 O 1.42107 * 108.70199 * 193.50854 * 26 23 22 29 29 H 1.08998 * 109.47756 * 299.59281 * 1 2 3 30 30 H 1.08998 * 109.47686 * 59.59813 * 1 2 3 31 31 H 1.09007 * 109.47168 * 179.59375 * 1 2 3 32 32 H 1.08993 * 109.39874 * 297.73245 * 4 2 1 33 33 H 1.09003 * 109.39919 * 57.46956 * 4 2 1 34 34 H 1.08995 * 109.46985 * 290.00026 * 6 5 4 35 35 H 1.09002 * 109.46908 * 49.99758 * 6 5 4 36 36 H 1.07998 * 119.97028 * 359.97438 * 8 7 6 37 37 H 1.08005 * 120.03192 * 180.27607 * 9 8 7 38 38 H 0.96989 * 119.99916 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.03977 * 179.97438 * 20 10 9 40 40 H 1.08000 * 119.96425 * 179.97438 * 21 20 10 41 41 H 1.08998 * 109.53120 * 168.05720 * 22 5 4 42 42 H 1.09000 * 109.25242 * 48.33582 * 22 5 4 43 43 H 1.09003 * 109.47057 * 300.32178 * 25 23 22 44 44 H 1.08996 * 109.46931 * 60.31969 * 25 23 22 45 45 H 1.09003 * 109.46959 * 180.32388 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8979 1.0261 0.0000 4 6 2.0439 -0.7302 -1.2446 5 7 3.5075 -0.6846 -1.2807 6 6 4.0113 -1.0053 -2.6228 7 6 5.4880 -0.7120 -2.6884 8 6 5.9261 0.5398 -3.0806 9 6 7.2786 0.8134 -3.1363 10 6 8.1993 -0.1733 -2.8087 11 8 9.5295 0.0910 -2.8673 12 6 10.3649 -0.8714 -2.4270 13 1 9.9719 -1.8314 -2.1264 14 6 11.7284 -0.6286 -2.3602 15 7 12.5436 -1.5678 -1.9311 16 14 12.4079 1.0321 -2.8797 17 1 12.4400 1.9425 -1.7070 18 1 13.7841 0.8597 -3.4105 19 1 11.5399 1.6141 -3.9346 20 6 7.7563 -1.4311 -2.4206 21 6 6.4023 -1.6967 -2.3611 22 6 4.1229 -1.5476 -0.2700 23 6 3.9218 -0.9445 1.1235 24 1 4.3443 0.0599 1.1518 25 6 4.6146 -1.8224 2.1677 26 16 2.1400 -0.8668 1.4772 27 8 1.6176 -2.1882 1.4783 28 8 1.9364 -0.0342 2.6107 29 1 -0.3634 0.5075 0.8936 30 1 -0.3634 0.5200 -0.8863 31 1 -0.3634 -1.0277 -0.0073 32 1 1.7147 -1.7689 -1.2167 33 1 1.6446 -0.2491 -2.1374 34 1 3.8410 -2.0613 -2.8320 35 1 3.4873 -0.3993 -3.3619 36 1 5.2098 1.3054 -3.3398 37 1 7.6201 1.7926 -3.4384 38 1 13.4973 -1.3978 -1.8841 39 1 8.4698 -2.2007 -2.1656 40 1 6.0572 -2.6747 -2.0598 41 1 5.1896 -1.6429 -0.4729 42 1 3.6591 -2.5333 -0.3084 43 1 4.1905 -2.8260 2.1377 44 1 5.6815 -1.8721 1.9503 45 1 4.4652 -1.3943 3.1590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289711262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:14 Heat of formation + Delta-G solvation = -64.124975 kcal Electronic energy + Delta-G solvation = -27726.141881 eV Core-core repulsion = 23836.911548 eV Total energy + Delta-G solvation = -3889.230333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.67341 -38.70616 -37.17755 -36.61970 -36.23536 -34.75702 -33.34830 -32.43040 -30.41783 -30.04139 -27.23972 -26.71109 -25.27347 -23.78858 -22.35879 -22.04665 -21.65866 -20.38665 -18.98121 -17.97562 -17.37883 -17.13501 -17.05905 -16.16558 -15.94925 -15.47274 -15.05986 -14.82378 -14.31078 -14.09612 -14.02755 -13.86745 -13.60719 -13.48278 -13.27113 -13.07513 -12.93830 -12.68940 -12.54271 -12.28873 -12.27581 -12.22093 -12.20114 -12.09847 -11.92782 -11.67990 -11.50603 -11.30856 -10.92194 -10.82958 -10.74229 -10.62613 -10.22997 -10.10448 -9.47550 -8.94866 -8.66285 -8.34796 -7.43130 -6.49268 -4.16279 -0.20943 1.99579 2.04711 2.45497 3.16577 3.20713 3.32074 3.34864 3.42805 3.85142 4.09466 4.17116 4.29470 4.38430 4.43568 4.61802 4.68780 4.77103 4.79495 4.97598 5.02713 5.08615 5.13829 5.18430 5.26143 5.30505 5.39759 5.44611 5.53513 5.56169 5.58986 5.66915 5.68123 5.73561 5.84666 6.02208 6.22479 6.45854 6.63115 6.69894 6.70958 6.96600 7.14368 7.18829 7.51190 7.70891 7.95317 8.85725 9.47139 10.58146 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.002712 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.719789 B =10322.622563 C =10940.734933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.559 4.559 3 H 0.146 0.854 4 C 0.069 3.931 5 N -0.552 5.552 6 C 0.118 3.882 7 C -0.178 4.178 8 C -0.053 4.053 9 C -0.194 4.194 10 C 0.163 3.837 11 O -0.215 6.215 12 C -0.391 4.391 13 H 0.107 0.893 14 C 0.064 3.936 15 N -0.877 5.877 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.259 1.259 20 C -0.221 4.221 21 C -0.069 4.069 22 C 0.060 3.940 23 C -0.551 4.551 24 H 0.147 0.853 25 C -0.143 4.143 26 S 2.405 3.595 27 O -0.938 6.938 28 O -0.943 6.943 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.280 0.720 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.469 1.759 1.934 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.670 4.670 3 H 0.164 0.836 4 C -0.060 4.060 5 N -0.277 5.277 6 C -0.008 4.008 7 C -0.180 4.180 8 C -0.071 4.071 9 C -0.213 4.213 10 C 0.110 3.890 11 O -0.120 6.120 12 C -0.466 4.466 13 H 0.124 0.876 14 C -0.139 4.139 15 N -0.515 5.515 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.183 1.183 20 C -0.240 4.240 21 C -0.088 4.088 22 C -0.068 4.068 23 C -0.662 4.662 24 H 0.165 0.835 25 C -0.201 4.201 26 S 2.588 3.412 27 O -0.936 6.936 28 O -0.941 6.941 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.449 2.027 2.743 21.719 hybrid contribution 0.796 0.178 -0.919 1.229 sum -20.653 2.205 1.824 20.850 Atomic orbital electron populations 1.21582 0.89839 1.03969 1.04499 1.30013 1.06006 1.14147 1.16805 0.83584 1.21871 0.87920 0.99150 0.97080 1.61188 1.04757 1.55499 1.06239 1.20785 0.93010 0.99155 0.87801 1.19089 0.93117 0.95354 1.10410 1.20452 0.94062 0.95334 0.97285 1.20227 0.91885 0.98800 1.10405 1.19152 0.84150 0.92808 0.92850 1.83577 1.12143 1.43246 1.73028 1.20763 0.87791 0.94350 1.43738 0.87605 1.24476 0.94681 0.99063 0.95720 1.69640 1.04467 1.33272 1.44113 0.86179 0.78133 0.82667 0.79921 1.19828 1.20733 1.18345 1.21243 0.95840 0.98020 1.08930 1.20667 0.92664 0.97615 0.97838 1.22042 1.04512 0.93238 0.87039 1.29969 1.22933 1.09837 1.03510 0.83542 1.21611 1.03164 0.98910 0.96445 1.08697 0.78934 0.76146 0.77378 1.93553 1.77308 1.35930 1.86763 1.93571 1.84679 1.69279 1.46521 0.90947 0.89886 0.90786 0.92648 0.88375 0.94010 0.90010 0.86820 0.86534 0.90951 0.84945 0.87441 0.86702 0.92794 0.90819 0.89308 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.56 -4.49 3.23 -26.64 -0.09 -4.58 16 3 H 0.15 1.02 8.14 -51.92 -0.42 0.59 16 4 C 0.07 0.56 4.70 -3.96 -0.02 0.54 16 5 N -0.55 -5.59 4.42 -236.59 -1.04 -6.63 16 6 C 0.12 1.27 5.12 -4.98 -0.03 1.24 16 7 C -0.18 -2.55 4.88 -104.57 -0.51 -3.06 16 8 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 9 C -0.19 -3.57 9.99 -39.39 -0.39 -3.96 16 10 C 0.16 3.54 6.65 -39.11 -0.26 3.28 16 11 O -0.22 -5.46 8.59 0.04 0.00 -5.46 16 12 C -0.39 -10.64 9.95 30.89 0.31 -10.34 16 13 H 0.11 2.93 5.44 -52.48 -0.29 2.65 16 14 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 15 N -0.88 -24.76 13.96 55.48 0.77 -23.98 16 16 Si 0.91 21.13 28.62 -169.99 -4.86 16.26 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.22 -4.40 9.17 -39.39 -0.36 -4.76 16 21 C -0.07 -1.10 7.76 -39.61 -0.31 -1.41 16 22 C 0.06 0.65 4.53 -3.97 -0.02 0.63 16 23 C -0.55 -5.62 3.22 -26.64 -0.09 -5.71 16 24 H 0.15 1.40 8.14 -51.93 -0.42 0.98 16 25 C -0.14 -1.40 9.19 37.16 0.34 -1.06 16 26 S 2.41 25.86 4.13 -107.50 -0.44 25.42 16 27 O -0.94 -12.25 18.02 -57.79 -1.04 -13.29 16 28 O -0.94 -12.91 18.11 -57.79 -1.05 -13.95 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.44 7.94 -51.93 -0.41 0.03 16 33 H 0.10 0.64 7.77 -51.93 -0.40 0.23 16 34 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.08 0.75 7.78 -51.93 -0.40 0.35 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 38 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 40 H 0.11 1.46 7.76 -52.49 -0.41 1.05 16 41 H 0.11 1.39 4.99 -51.93 -0.26 1.13 16 42 H 0.05 0.54 7.94 -51.93 -0.41 0.12 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -32.31 372.84 -10.27 -42.58 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.66 Total: 2.76 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: -1.56 Total: -29.31 kcal Atomic # 7 Polarization: -30.35 SS G_CDS: -0.27 Total: -30.62 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -2.09 Total: -32.71 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.86 Total: 16.26 kcal Atomic # 16 Polarization: 25.86 SS G_CDS: -0.44 Total: 25.42 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.31 -10.27 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289711262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.550 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds