Wall clock time and date at job start Tue Mar 31 2020 23:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.72640 * 2 1 4 4 C 1.53182 * 109.60374 * 239.59903 * 2 1 3 5 5 N 1.46472 * 109.90080 * 177.60331 * 4 2 1 6 6 C 1.46897 * 111.00072 * 196.99760 * 5 4 2 7 7 C 1.50699 * 109.47285 * 169.99943 * 6 5 4 8 8 C 1.38305 * 119.92854 * 269.73009 * 7 6 5 9 9 C 1.38102 * 120.06542 * 179.72721 * 8 7 6 10 10 C 1.38877 * 119.93059 * 0.53568 * 9 8 7 11 11 O 1.35750 * 120.06987 * 179.75098 * 10 9 8 12 12 C 1.34832 * 117.00252 * 174.44412 * 11 10 9 13 13 H 1.08005 * 119.99636 * 5.06143 * 12 11 10 14 14 C 1.38652 * 120.00240 * 185.05415 * 12 11 10 15 15 N 1.31560 * 120.00391 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99830 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46849 * 89.99870 * 16 14 12 18 18 H 1.48504 * 109.46996 * 209.99818 * 16 14 12 19 19 H 1.48492 * 109.47181 * 329.99628 * 16 14 12 20 20 C 1.38877 * 119.86502 * 359.73665 * 10 9 8 21 21 C 1.38105 * 119.92883 * 359.97438 * 20 10 9 22 22 C 1.46456 * 112.61562 * 71.89846 * 5 4 2 23 23 C 1.53175 * 109.91173 * 288.28577 * 22 5 4 24 24 H 1.08997 * 109.60364 * 302.54139 * 23 22 5 25 25 C 1.53005 * 109.60105 * 182.22120 * 23 22 5 26 26 S 1.81812 * 108.81387 * 62.38257 * 23 22 5 27 27 O 1.42097 * 108.70648 * 62.01937 * 26 23 22 28 28 O 1.42107 * 108.70199 * 193.50854 * 26 23 22 29 29 H 1.08998 * 109.47756 * 299.59281 * 1 2 3 30 30 H 1.08998 * 109.47686 * 59.59813 * 1 2 3 31 31 H 1.09007 * 109.47168 * 179.59375 * 1 2 3 32 32 H 1.08993 * 109.39874 * 297.73245 * 4 2 1 33 33 H 1.09003 * 109.39919 * 57.46956 * 4 2 1 34 34 H 1.08995 * 109.46985 * 290.00026 * 6 5 4 35 35 H 1.09002 * 109.46908 * 49.99758 * 6 5 4 36 36 H 1.07998 * 119.97028 * 359.97438 * 8 7 6 37 37 H 1.08005 * 120.03192 * 180.27607 * 9 8 7 38 38 H 0.96989 * 119.99916 * 180.02562 * 15 14 12 39 39 H 1.07999 * 120.03977 * 179.97438 * 20 10 9 40 40 H 1.08000 * 119.96425 * 179.97438 * 21 20 10 41 41 H 1.08998 * 109.53120 * 168.05720 * 22 5 4 42 42 H 1.09000 * 109.25242 * 48.33582 * 22 5 4 43 43 H 1.09003 * 109.47057 * 300.32178 * 25 23 22 44 44 H 1.08996 * 109.46931 * 60.31969 * 25 23 22 45 45 H 1.09003 * 109.46959 * 180.32388 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8979 1.0261 0.0000 4 6 2.0439 -0.7302 -1.2446 5 7 3.5075 -0.6846 -1.2807 6 6 4.0113 -1.0053 -2.6228 7 6 5.4880 -0.7120 -2.6884 8 6 5.9261 0.5398 -3.0806 9 6 7.2786 0.8134 -3.1363 10 6 8.1993 -0.1733 -2.8087 11 8 9.5295 0.0910 -2.8673 12 6 10.3649 -0.8714 -2.4270 13 1 9.9719 -1.8314 -2.1264 14 6 11.7284 -0.6286 -2.3602 15 7 12.5436 -1.5678 -1.9311 16 14 12.4079 1.0321 -2.8797 17 1 12.4400 1.9425 -1.7070 18 1 13.7841 0.8597 -3.4105 19 1 11.5399 1.6141 -3.9346 20 6 7.7563 -1.4311 -2.4206 21 6 6.4023 -1.6967 -2.3611 22 6 4.1229 -1.5476 -0.2700 23 6 3.9218 -0.9445 1.1235 24 1 4.3443 0.0599 1.1518 25 6 4.6146 -1.8224 2.1677 26 16 2.1400 -0.8668 1.4772 27 8 1.6176 -2.1882 1.4783 28 8 1.9364 -0.0342 2.6107 29 1 -0.3634 0.5075 0.8936 30 1 -0.3634 0.5200 -0.8863 31 1 -0.3634 -1.0277 -0.0073 32 1 1.7147 -1.7689 -1.2167 33 1 1.6446 -0.2491 -2.1374 34 1 3.8410 -2.0613 -2.8320 35 1 3.4873 -0.3993 -3.3619 36 1 5.2098 1.3054 -3.3398 37 1 7.6201 1.7926 -3.4384 38 1 13.4973 -1.3978 -1.8841 39 1 8.4698 -2.2007 -2.1656 40 1 6.0572 -2.6747 -2.0598 41 1 5.1896 -1.6429 -0.4729 42 1 3.6591 -2.5333 -0.3084 43 1 4.1905 -2.8260 2.1377 44 1 5.6815 -1.8721 1.9503 45 1 4.4652 -1.3943 3.1590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289711262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:13 Heat of formation + Delta-G solvation = -87.273876 kcal Electronic energy + Delta-G solvation = -27727.145693 eV Core-core repulsion = 23836.911548 eV Total energy + Delta-G solvation = -3890.234145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.01732 -39.84440 -38.26623 -37.86261 -37.15370 -35.46815 -34.57173 -34.06691 -31.82693 -31.24494 -28.04899 -27.90354 -26.77486 -24.79389 -23.69314 -22.87037 -22.57819 -21.67365 -19.81922 -19.78175 -19.07478 -17.92511 -17.87872 -17.04066 -16.86266 -16.54214 -16.45913 -16.09512 -15.62460 -15.54449 -15.39905 -14.88701 -14.76694 -14.37963 -14.26306 -14.19685 -14.04612 -13.95227 -13.73121 -13.41574 -13.23028 -13.18067 -13.09654 -12.96577 -12.92314 -12.78013 -12.51024 -12.39974 -12.30025 -12.20683 -12.04070 -11.88952 -11.45328 -11.25626 -10.91820 -10.84892 -9.75216 -9.45246 -8.96744 -8.50372 -6.22676 -1.01629 0.59018 0.63989 1.31335 1.34976 1.51417 1.67331 2.27444 2.49012 2.58684 2.83572 3.01669 3.12920 3.22984 3.38280 3.58981 3.67400 3.91269 3.93428 4.06004 4.06539 4.16271 4.22255 4.36461 4.46075 4.51859 4.57801 4.61254 4.64400 4.73076 4.79710 4.82141 4.85254 4.87731 4.94624 5.03317 5.04711 5.15651 5.28487 5.38467 5.59500 5.73809 5.80563 5.89370 5.92449 6.00845 6.27875 6.84525 7.60059 8.61303 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.002712 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.719789 B =10322.622563 C =10940.734933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.536 4.536 3 H 0.164 0.836 4 C 0.065 3.935 5 N -0.555 5.555 6 C 0.117 3.883 7 C -0.148 4.148 8 C -0.044 4.044 9 C -0.195 4.195 10 C 0.120 3.880 11 O -0.247 6.247 12 C -0.397 4.397 13 H 0.081 0.919 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.970 3.030 17 H -0.267 1.267 18 H -0.269 1.269 19 H -0.262 1.262 20 C -0.238 4.238 21 C -0.068 4.068 22 C 0.057 3.943 23 C -0.549 4.549 24 H 0.152 0.848 25 C -0.152 4.152 26 S 2.399 3.601 27 O -0.968 6.968 28 O -0.981 6.981 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.131 0.869 34 H 0.056 0.944 35 H 0.115 0.885 36 H 0.157 0.843 37 H 0.125 0.875 38 H 0.284 0.716 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.293 3.646 0.264 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.649 4.649 3 H 0.182 0.818 4 C -0.063 4.063 5 N -0.280 5.280 6 C -0.009 4.009 7 C -0.149 4.149 8 C -0.063 4.063 9 C -0.214 4.214 10 C 0.071 3.929 11 O -0.155 6.155 12 C -0.473 4.473 13 H 0.098 0.902 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.194 1.194 19 H -0.186 1.186 20 C -0.258 4.258 21 C -0.086 4.086 22 C -0.072 4.072 23 C -0.660 4.660 24 H 0.170 0.830 25 C -0.210 4.210 26 S 2.586 3.414 27 O -0.965 6.965 28 O -0.978 6.978 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.175 0.825 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.323 3.893 1.108 25.645 hybrid contribution 1.538 -0.460 -0.412 1.657 sum -23.786 3.433 0.696 24.042 Atomic orbital electron populations 1.21737 0.88540 1.04512 1.05906 1.29847 1.06961 1.14234 1.13903 0.81813 1.22057 0.86261 0.99975 0.98045 1.61102 1.06216 1.55189 1.05468 1.20897 0.90070 1.00975 0.88947 1.19620 0.95361 0.94070 1.05814 1.20948 0.93182 0.96603 0.95543 1.20560 0.92828 0.98423 1.09590 1.19728 0.83509 0.94569 0.95102 1.83518 1.13590 1.42754 1.75614 1.20686 0.88633 0.94167 1.43835 0.90182 1.25275 0.94893 1.02618 0.96120 1.69728 1.04881 1.35244 1.46727 0.85223 0.77701 0.78340 0.79495 1.19175 1.19357 1.18592 1.21231 0.97397 0.97103 1.10042 1.20942 0.91096 0.99481 0.97086 1.22035 1.03648 0.94024 0.87467 1.29930 1.22678 1.10071 1.03355 0.83032 1.21697 1.03130 0.99299 0.96884 1.08703 0.78848 0.75590 0.78233 1.93511 1.77774 1.37626 1.87613 1.93522 1.85159 1.69706 1.49435 0.90992 0.87052 0.90817 0.92085 0.85147 0.92549 0.86709 0.82522 0.85679 0.90629 0.87849 0.85074 0.88392 0.92066 0.90532 0.89541 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.19 71.98 0.66 -0.72 16 2 C -0.54 -6.34 3.23 30.65 0.10 -6.24 16 3 H 0.16 1.46 8.14 -2.38 -0.02 1.44 16 4 C 0.06 0.69 4.70 86.45 0.41 1.09 16 5 N -0.56 -8.45 4.42 -902.42 -3.98 -12.44 16 6 C 0.12 1.81 5.12 85.56 0.44 2.25 16 7 C -0.15 -3.61 4.88 -19.83 -0.10 -3.71 16 8 C -0.04 -1.16 9.69 22.25 0.22 -0.94 16 9 C -0.19 -6.85 9.99 22.39 0.22 -6.63 16 10 C 0.12 5.34 6.65 22.58 0.15 5.49 16 11 O -0.25 -13.12 8.59 -22.77 -0.20 -13.32 16 12 C -0.40 -23.04 9.95 67.92 0.68 -22.37 16 13 H 0.08 4.87 5.44 -2.91 -0.02 4.86 16 14 C 0.01 0.52 5.49 84.83 0.47 0.99 16 15 N -0.92 -54.97 13.96 21.61 0.30 -54.67 16 16 Si 0.97 45.00 28.62 68.60 1.96 46.96 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 20 C -0.24 -9.83 9.17 22.39 0.21 -9.63 16 21 C -0.07 -2.05 7.76 22.25 0.17 -1.88 16 22 C 0.06 1.07 4.53 86.45 0.39 1.46 16 23 C -0.55 -10.36 3.22 30.65 0.10 -10.26 16 24 H 0.15 2.65 8.14 -2.39 -0.02 2.64 16 25 C -0.15 -2.96 9.19 71.98 0.66 -2.30 16 26 S 2.40 47.68 4.13 -56.49 -0.23 47.45 16 27 O -0.97 -24.21 18.02 -127.41 -2.30 -26.51 16 28 O -0.98 -26.23 18.11 -127.41 -2.31 -28.54 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.65 7.94 -2.39 -0.02 0.63 16 33 H 0.13 0.68 7.77 -2.39 -0.02 0.67 16 34 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 35 H 0.11 1.18 7.78 -2.39 -0.02 1.16 16 36 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.28 15.51 8.31 -92.72 -0.77 14.73 16 39 H 0.10 4.81 5.64 -2.91 -0.02 4.80 16 40 H 0.13 3.32 7.76 -2.91 -0.02 3.30 16 41 H 0.10 2.17 4.99 -2.39 -0.01 2.16 16 42 H 0.06 1.06 7.94 -2.39 -0.02 1.04 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -75.62 372.84 -0.99 -76.61 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.99 Total: 17.83 kcal Atomic # 6 Polarization: -58.16 SS G_CDS: 4.77 Total: -53.39 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -3.68 Total: -67.11 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: -4.80 Total: -68.36 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.96 Total: 46.96 kcal Atomic # 16 Polarization: 47.68 SS G_CDS: -0.23 Total: 47.45 kcal Total: -75.62 -0.99 -76.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289711262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.659 kcal (2) G-P(sol) polarization free energy of solvation -75.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds