Wall clock time and date at job start Tue Mar 31 2020 23:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.73397 * 2 1 4 4 C 1.53180 * 109.60168 * 120.40230 * 2 1 3 5 5 N 1.46475 * 109.89743 * 57.12569 * 4 2 1 6 6 C 1.46899 * 110.99960 * 196.99820 * 5 4 2 7 7 C 1.50699 * 109.47268 * 169.99408 * 6 5 4 8 8 C 1.38300 * 119.93645 * 269.73229 * 7 6 5 9 9 C 1.38098 * 120.06873 * 179.72456 * 8 7 6 10 10 C 1.38880 * 119.93121 * 0.54323 * 9 8 7 11 11 O 1.35755 * 120.06664 * 179.74912 * 10 9 8 12 12 C 1.34827 * 116.99718 * 174.44373 * 11 10 9 13 13 H 1.08001 * 120.00253 * 5.05213 * 12 11 10 14 14 C 1.38648 * 120.00199 * 185.05823 * 12 11 10 15 15 N 1.31556 * 120.00577 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99678 * 359.97438 * 14 12 11 17 17 H 1.48492 * 109.47210 * 90.00374 * 16 14 12 18 18 H 1.48499 * 109.46976 * 210.00244 * 16 14 12 19 19 H 1.48497 * 109.47198 * 330.00101 * 16 14 12 20 20 C 1.38875 * 119.86257 * 359.72609 * 10 9 8 21 21 C 1.38101 * 119.93245 * 0.02562 * 20 10 9 22 22 C 1.46466 * 112.46675 * 71.95925 * 5 4 2 23 23 C 1.53178 * 109.90140 * 288.04319 * 22 5 4 24 24 H 1.09000 * 109.59803 * 302.87378 * 23 22 5 25 25 C 1.53003 * 109.73779 * 182.47062 * 23 22 5 26 26 S 1.81810 * 108.68232 * 62.63076 * 23 22 5 27 27 O 1.42105 * 108.70583 * 193.43244 * 26 23 22 28 28 O 1.42095 * 108.70085 * 61.94000 * 26 23 22 29 29 H 1.09000 * 109.47114 * 299.59935 * 1 2 3 30 30 H 1.08999 * 109.46844 * 59.59215 * 1 2 3 31 31 H 1.08994 * 109.47262 * 179.59212 * 1 2 3 32 32 H 1.08997 * 109.40324 * 296.99447 * 4 2 1 33 33 H 1.08999 * 109.40066 * 177.25031 * 4 2 1 34 34 H 1.08995 * 109.47285 * 290.00215 * 6 5 4 35 35 H 1.09009 * 109.47196 * 50.00069 * 6 5 4 36 36 H 1.08001 * 119.96105 * 359.97438 * 8 7 6 37 37 H 1.08002 * 120.03550 * 180.26892 * 9 8 7 38 38 H 0.97004 * 120.00496 * 179.97438 * 15 14 12 39 39 H 1.07998 * 120.03530 * 179.97438 * 20 10 9 40 40 H 1.07997 * 119.96758 * 180.02562 * 21 20 10 41 41 H 1.09007 * 109.39841 * 48.16835 * 22 5 4 42 42 H 1.09001 * 109.39985 * 167.90400 * 22 5 4 43 43 H 1.09002 * 109.47010 * 300.72499 * 25 23 22 44 44 H 1.09004 * 109.46981 * 60.72458 * 25 23 22 45 45 H 1.09001 * 109.47083 * 180.71911 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0439 -0.7303 1.2446 5 7 1.5069 -2.0925 1.2806 6 6 1.6386 -2.6751 2.6227 7 6 0.8639 -3.9660 2.6882 8 6 -0.4623 -3.9559 3.0804 9 6 -1.1764 -5.1366 3.1360 10 6 -0.5583 -6.3364 2.8085 11 8 -1.2563 -7.4993 2.8671 12 6 -0.6324 -8.6104 2.4268 13 1 0.4039 -8.5647 2.1262 14 6 -1.3211 -9.8119 2.3599 15 7 -0.7126 -10.8960 1.9299 16 14 -3.1135 -9.8911 2.8805 17 1 -3.9820 -9.6136 1.7085 18 1 -3.4154 -11.2449 3.4108 19 1 -3.3677 -8.8780 3.9360 20 6 0.7751 -6.3439 2.4204 21 6 1.4825 -5.1593 2.3618 22 6 2.1147 -2.9607 0.2696 23 6 1.6117 -2.5702 -1.1236 24 1 0.5236 -2.6282 -1.1490 25 6 2.2009 -3.5181 -2.1701 26 16 2.1401 -0.8668 -1.4772 27 8 1.4252 -0.3939 -2.6106 28 8 3.5603 -0.8213 -1.4782 29 1 -0.3633 0.5076 0.8936 30 1 -0.3633 0.5202 -0.8863 31 1 -0.3633 -1.0276 -0.0073 32 1 1.7258 -0.1920 2.1374 33 1 3.1328 -0.7711 1.2167 34 1 2.6901 -2.8712 2.8320 35 1 1.2450 -1.9773 3.3619 36 1 -0.9410 -3.0231 3.3396 37 1 -2.2133 -5.1275 3.4382 38 1 -1.1943 -11.7367 1.8834 39 1 1.2586 -7.2754 2.1655 40 1 2.5193 -5.1644 2.0597 41 1 3.1990 -2.8546 0.3058 42 1 1.8467 -3.9972 0.4740 43 1 3.2891 -3.4626 -2.1390 44 1 1.8829 -4.5385 -1.9561 45 1 1.8505 -3.2285 -3.1608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289711269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:24 Heat of formation + Delta-G solvation = -61.882218 kcal Electronic energy + Delta-G solvation = -27953.867138 eV Core-core repulsion = 24064.734058 eV Total energy + Delta-G solvation = -3889.133080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.70491 -38.75402 -37.21534 -36.68927 -36.22349 -34.39408 -33.38176 -32.42285 -30.39957 -29.94466 -27.30337 -26.62547 -25.28964 -23.65479 -22.87211 -22.08818 -21.38806 -20.42007 -18.71538 -17.97377 -17.37407 -17.20616 -16.87507 -16.03661 -15.78602 -15.66024 -15.10034 -14.92639 -14.56906 -14.10406 -13.87978 -13.78902 -13.59066 -13.34621 -13.21321 -13.00408 -12.88579 -12.80026 -12.40780 -12.33591 -12.27229 -12.20450 -12.14015 -11.95882 -11.89308 -11.60923 -11.44443 -11.30328 -10.91718 -10.82303 -10.73962 -10.64180 -10.22882 -10.07427 -9.47461 -8.94761 -8.63351 -8.34595 -7.42932 -6.49168 -4.16211 -0.18974 1.99881 2.05026 2.43133 3.16627 3.20763 3.34486 3.37339 3.44276 3.84372 4.12412 4.17124 4.26864 4.40971 4.46539 4.63835 4.71744 4.77735 4.83391 5.02587 5.05623 5.12221 5.19267 5.23740 5.31265 5.38534 5.47291 5.51786 5.54918 5.57037 5.66431 5.68056 5.74335 5.85441 5.95496 6.02385 6.22740 6.46069 6.63826 6.70494 6.71310 6.96848 7.14610 7.19114 7.51342 7.70982 7.95326 8.85812 9.47231 10.58188 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.002816 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.349091 B = 9939.370185 C =10441.026422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.557 4.557 3 H 0.136 0.864 4 C 0.067 3.933 5 N -0.547 5.547 6 C 0.118 3.882 7 C -0.178 4.178 8 C -0.052 4.052 9 C -0.194 4.194 10 C 0.163 3.837 11 O -0.215 6.215 12 C -0.391 4.391 13 H 0.107 0.893 14 C 0.064 3.936 15 N -0.877 5.877 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.259 1.259 20 C -0.221 4.221 21 C -0.069 4.069 22 C 0.060 3.940 23 C -0.550 4.550 24 H 0.148 0.852 25 C -0.142 4.142 26 S 2.404 3.596 27 O -0.941 6.941 28 O -0.942 6.942 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.280 0.720 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.054 0.946 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.684 20.135 -1.936 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.667 4.667 3 H 0.154 0.846 4 C -0.062 4.062 5 N -0.272 5.272 6 C -0.007 4.007 7 C -0.179 4.179 8 C -0.071 4.071 9 C -0.213 4.213 10 C 0.110 3.890 11 O -0.120 6.120 12 C -0.467 4.467 13 H 0.124 0.876 14 C -0.139 4.139 15 N -0.515 5.515 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.184 1.184 20 C -0.240 4.240 21 C -0.088 4.088 22 C -0.069 4.069 23 C -0.661 4.661 24 H 0.165 0.835 25 C -0.201 4.201 26 S 2.587 3.413 27 O -0.939 6.939 28 O -0.939 6.939 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.150 0.850 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.430 20.218 -2.748 20.879 hybrid contribution -0.237 -0.559 0.940 1.119 sum 4.193 19.659 -1.808 20.182 Atomic orbital electron populations 1.21533 0.88953 1.04789 1.03636 1.30003 1.08131 1.11851 1.16760 0.84568 1.21834 0.97574 0.89628 0.97149 1.61212 1.58799 1.01020 1.06157 1.20784 0.97915 0.94202 0.87847 1.19084 0.95301 0.93124 1.10375 1.20444 0.93008 0.96366 0.97290 1.20225 1.00304 0.90381 1.10416 1.19154 0.90568 0.86390 0.92855 1.83577 1.41597 1.13795 1.73041 1.20759 0.98112 0.84035 1.43750 0.87610 1.24473 0.99976 0.93762 0.95719 1.69641 1.37802 0.99946 1.44085 0.86181 0.83056 0.77753 0.79921 1.19826 1.20739 1.18352 1.21240 0.94909 0.98954 1.08932 1.20667 0.98338 0.91933 0.97835 1.22048 0.96623 1.01134 0.87098 1.29939 1.12326 1.20371 1.03456 0.83456 1.21606 1.01524 1.00542 0.96422 1.08705 0.75890 0.79255 0.77434 1.93566 1.74754 1.79100 1.46433 1.93560 1.27470 1.86044 1.86858 0.90604 0.91341 0.89786 0.88376 0.92729 0.94058 0.90031 0.86826 0.86561 0.90956 0.84975 0.87464 0.92817 0.86728 0.90894 0.89335 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 8.79 37.16 0.33 -0.69 16 2 C -0.56 -4.42 3.41 -26.64 -0.09 -4.51 16 3 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.07 0.53 4.88 -3.96 -0.02 0.51 16 5 N -0.55 -5.33 3.57 -236.57 -0.85 -6.17 16 6 C 0.12 1.23 5.12 -4.98 -0.03 1.21 16 7 C -0.18 -2.48 4.89 -104.57 -0.51 -2.99 16 8 C -0.05 -0.78 9.69 -39.61 -0.38 -1.16 16 9 C -0.19 -3.53 9.99 -39.40 -0.39 -3.92 16 10 C 0.16 3.51 6.65 -39.11 -0.26 3.25 16 11 O -0.22 -5.45 8.59 0.04 0.00 -5.44 16 12 C -0.39 -10.62 9.95 30.88 0.31 -10.31 16 13 H 0.11 2.93 5.44 -52.49 -0.29 2.64 16 14 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 15 N -0.88 -24.69 13.96 55.48 0.77 -23.92 16 16 Si 0.91 21.07 28.62 -169.99 -4.86 16.21 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 20 C -0.22 -4.37 9.17 -39.40 -0.36 -4.73 16 21 C -0.07 -1.09 7.77 -39.60 -0.31 -1.39 16 22 C 0.06 0.62 4.54 -3.97 -0.02 0.60 16 23 C -0.55 -5.48 2.82 -26.64 -0.08 -5.55 16 24 H 0.15 1.36 7.37 -51.93 -0.38 0.98 16 25 C -0.14 -1.37 9.20 37.16 0.34 -1.03 16 26 S 2.40 25.65 4.28 -107.50 -0.46 25.19 16 27 O -0.94 -12.67 17.70 -57.79 -1.02 -13.69 16 28 O -0.94 -12.51 18.06 -57.79 -1.04 -13.56 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.52 7.96 -51.93 -0.41 0.10 16 31 H 0.08 0.70 6.45 -51.93 -0.34 0.36 16 32 H 0.10 0.62 7.77 -51.93 -0.40 0.22 16 33 H 0.05 0.42 7.93 -51.93 -0.41 0.01 16 34 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.08 0.73 7.78 -51.92 -0.40 0.33 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 40 H 0.11 1.44 7.76 -52.49 -0.41 1.04 16 41 H 0.05 0.53 7.93 -51.93 -0.41 0.11 16 42 H 0.11 1.35 4.99 -51.93 -0.26 1.10 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -32.11 368.71 -10.00 -42.11 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.52 Total: 2.79 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: -1.57 Total: -29.07 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: -0.07 Total: -30.09 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -2.07 Total: -32.69 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.21 kcal Atomic # 16 Polarization: 25.65 SS G_CDS: -0.46 Total: 25.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.11 -10.00 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289711269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.776 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds