Wall clock time and date at job start Tue Mar 31 2020 23:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.73397 * 2 1 4 4 C 1.53180 * 109.60168 * 120.40230 * 2 1 3 5 5 N 1.46475 * 109.89743 * 57.12569 * 4 2 1 6 6 C 1.46899 * 110.99960 * 196.99820 * 5 4 2 7 7 C 1.50699 * 109.47268 * 169.99408 * 6 5 4 8 8 C 1.38300 * 119.93645 * 269.73229 * 7 6 5 9 9 C 1.38098 * 120.06873 * 179.72456 * 8 7 6 10 10 C 1.38880 * 119.93121 * 0.54323 * 9 8 7 11 11 O 1.35755 * 120.06664 * 179.74912 * 10 9 8 12 12 C 1.34827 * 116.99718 * 174.44373 * 11 10 9 13 13 H 1.08001 * 120.00253 * 5.05213 * 12 11 10 14 14 C 1.38648 * 120.00199 * 185.05823 * 12 11 10 15 15 N 1.31556 * 120.00577 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99678 * 359.97438 * 14 12 11 17 17 H 1.48492 * 109.47210 * 90.00374 * 16 14 12 18 18 H 1.48499 * 109.46976 * 210.00244 * 16 14 12 19 19 H 1.48497 * 109.47198 * 330.00101 * 16 14 12 20 20 C 1.38875 * 119.86257 * 359.72609 * 10 9 8 21 21 C 1.38101 * 119.93245 * 0.02562 * 20 10 9 22 22 C 1.46466 * 112.46675 * 71.95925 * 5 4 2 23 23 C 1.53178 * 109.90140 * 288.04319 * 22 5 4 24 24 H 1.09000 * 109.59803 * 302.87378 * 23 22 5 25 25 C 1.53003 * 109.73779 * 182.47062 * 23 22 5 26 26 S 1.81810 * 108.68232 * 62.63076 * 23 22 5 27 27 O 1.42105 * 108.70583 * 193.43244 * 26 23 22 28 28 O 1.42095 * 108.70085 * 61.94000 * 26 23 22 29 29 H 1.09000 * 109.47114 * 299.59935 * 1 2 3 30 30 H 1.08999 * 109.46844 * 59.59215 * 1 2 3 31 31 H 1.08994 * 109.47262 * 179.59212 * 1 2 3 32 32 H 1.08997 * 109.40324 * 296.99447 * 4 2 1 33 33 H 1.08999 * 109.40066 * 177.25031 * 4 2 1 34 34 H 1.08995 * 109.47285 * 290.00215 * 6 5 4 35 35 H 1.09009 * 109.47196 * 50.00069 * 6 5 4 36 36 H 1.08001 * 119.96105 * 359.97438 * 8 7 6 37 37 H 1.08002 * 120.03550 * 180.26892 * 9 8 7 38 38 H 0.97004 * 120.00496 * 179.97438 * 15 14 12 39 39 H 1.07998 * 120.03530 * 179.97438 * 20 10 9 40 40 H 1.07997 * 119.96758 * 180.02562 * 21 20 10 41 41 H 1.09007 * 109.39841 * 48.16835 * 22 5 4 42 42 H 1.09001 * 109.39985 * 167.90400 * 22 5 4 43 43 H 1.09002 * 109.47010 * 300.72499 * 25 23 22 44 44 H 1.09004 * 109.46981 * 60.72458 * 25 23 22 45 45 H 1.09001 * 109.47083 * 180.71911 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0439 -0.7303 1.2446 5 7 1.5069 -2.0925 1.2806 6 6 1.6386 -2.6751 2.6227 7 6 0.8639 -3.9660 2.6882 8 6 -0.4623 -3.9559 3.0804 9 6 -1.1764 -5.1366 3.1360 10 6 -0.5583 -6.3364 2.8085 11 8 -1.2563 -7.4993 2.8671 12 6 -0.6324 -8.6104 2.4268 13 1 0.4039 -8.5647 2.1262 14 6 -1.3211 -9.8119 2.3599 15 7 -0.7126 -10.8960 1.9299 16 14 -3.1135 -9.8911 2.8805 17 1 -3.9820 -9.6136 1.7085 18 1 -3.4154 -11.2449 3.4108 19 1 -3.3677 -8.8780 3.9360 20 6 0.7751 -6.3439 2.4204 21 6 1.4825 -5.1593 2.3618 22 6 2.1147 -2.9607 0.2696 23 6 1.6117 -2.5702 -1.1236 24 1 0.5236 -2.6282 -1.1490 25 6 2.2009 -3.5181 -2.1701 26 16 2.1401 -0.8668 -1.4772 27 8 1.4252 -0.3939 -2.6106 28 8 3.5603 -0.8213 -1.4782 29 1 -0.3633 0.5076 0.8936 30 1 -0.3633 0.5202 -0.8863 31 1 -0.3633 -1.0276 -0.0073 32 1 1.7258 -0.1920 2.1374 33 1 3.1328 -0.7711 1.2167 34 1 2.6901 -2.8712 2.8320 35 1 1.2450 -1.9773 3.3619 36 1 -0.9410 -3.0231 3.3396 37 1 -2.2133 -5.1275 3.4382 38 1 -1.1943 -11.7367 1.8834 39 1 1.2586 -7.2754 2.1655 40 1 2.5193 -5.1644 2.0597 41 1 3.1990 -2.8546 0.3058 42 1 1.8467 -3.9972 0.4740 43 1 3.2891 -3.4626 -2.1390 44 1 1.8829 -4.5385 -1.9561 45 1 1.8505 -3.2285 -3.1608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289711269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:23 Heat of formation + Delta-G solvation = -84.364351 kcal Electronic energy + Delta-G solvation = -27954.842036 eV Core-core repulsion = 24064.734058 eV Total energy + Delta-G solvation = -3890.107978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.01235 -39.88979 -38.23596 -37.98706 -37.13871 -35.13072 -34.58500 -34.07882 -31.80178 -31.14272 -28.06735 -27.85550 -26.76191 -24.66110 -23.86837 -23.31972 -22.25393 -21.67770 -19.78755 -19.53352 -19.06780 -17.99618 -17.67819 -16.93509 -16.81022 -16.54727 -16.38437 -16.08324 -15.77833 -15.57972 -15.51076 -15.01711 -14.56442 -14.35618 -14.26251 -14.13730 -13.97533 -13.92065 -13.70537 -13.40442 -13.21370 -13.18490 -13.06855 -13.00848 -12.79817 -12.61971 -12.51212 -12.33043 -12.23276 -12.18805 -12.00753 -11.88047 -11.45722 -11.24445 -10.90325 -10.82162 -9.73633 -9.40154 -8.95107 -8.49721 -6.22004 -0.99024 0.60562 0.65725 1.31752 1.35381 1.51781 1.65617 2.27905 2.53527 2.61446 2.84523 3.02028 3.14319 3.24463 3.41383 3.59391 3.70981 3.90440 3.96814 4.07807 4.12262 4.20603 4.24142 4.37845 4.48108 4.54896 4.60876 4.62961 4.73394 4.77166 4.82790 4.89023 4.90168 4.94826 4.97892 5.04888 5.06465 5.30015 5.39359 5.40494 5.60828 5.76091 5.81824 5.91664 5.93667 6.02985 6.29366 6.85196 7.60962 8.61885 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018658 B = 0.002816 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.349091 B = 9939.370185 C =10441.026422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.533 4.533 3 H 0.164 0.836 4 C 0.063 3.937 5 N -0.549 5.549 6 C 0.117 3.883 7 C -0.146 4.146 8 C -0.043 4.043 9 C -0.195 4.195 10 C 0.120 3.880 11 O -0.248 6.248 12 C -0.397 4.397 13 H 0.080 0.920 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.970 3.030 17 H -0.267 1.267 18 H -0.269 1.269 19 H -0.262 1.262 20 C -0.239 4.239 21 C -0.068 4.068 22 C 0.057 3.943 23 C -0.547 4.547 24 H 0.153 0.847 25 C -0.151 4.151 26 S 2.397 3.603 27 O -0.978 6.978 28 O -0.974 6.974 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.115 0.885 36 H 0.158 0.842 37 H 0.125 0.875 38 H 0.284 0.716 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 24.415 -0.274 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.647 4.647 3 H 0.182 0.818 4 C -0.065 4.065 5 N -0.273 5.273 6 C -0.008 4.008 7 C -0.147 4.147 8 C -0.062 4.062 9 C -0.214 4.214 10 C 0.071 3.929 11 O -0.155 6.155 12 C -0.473 4.473 13 H 0.098 0.902 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.194 1.194 19 H -0.186 1.186 20 C -0.258 4.258 21 C -0.086 4.086 22 C -0.072 4.072 23 C -0.658 4.658 24 H 0.171 0.829 25 C -0.209 4.209 26 S 2.585 3.415 27 O -0.975 6.975 28 O -0.972 6.972 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.133 0.867 36 H 0.175 0.825 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.149 0.851 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.003 24.540 -1.120 24.889 hybrid contribution 0.092 -1.488 0.431 1.552 sum 4.095 23.052 -0.689 23.423 Atomic orbital electron populations 1.21625 0.88424 1.04731 1.04667 1.29850 1.08349 1.12595 1.13901 0.81827 1.22025 0.98083 0.88370 0.98066 1.61126 1.59117 1.01764 1.05340 1.20889 0.98277 0.92662 0.89010 1.19611 0.95121 0.94225 1.05714 1.20941 0.93103 0.96629 0.95490 1.20559 1.01106 0.90134 1.09589 1.19733 0.91522 0.86552 0.95135 1.83518 1.42162 1.14197 1.75651 1.20681 0.97386 0.85425 1.43840 0.90213 1.25269 1.04140 0.93358 0.96126 1.69729 1.39518 1.00603 1.46713 0.85225 0.78046 0.78005 0.79496 1.19162 1.19385 1.18600 1.21224 0.94935 0.99566 1.10082 1.20939 0.99346 0.91214 0.97109 1.22036 0.97188 1.00456 0.87510 1.29889 1.12619 1.19971 1.03316 0.82908 1.21687 1.01798 1.00576 0.96871 1.08703 0.75046 0.79445 0.78302 1.93519 1.75032 1.79665 1.49260 1.93516 1.29396 1.86503 1.87738 0.88393 0.91557 0.90418 0.85166 0.92052 0.92661 0.86728 0.82471 0.85727 0.90647 0.87952 0.85148 0.92158 0.88401 0.90688 0.89564 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.79 71.98 0.63 -0.88 16 2 C -0.53 -6.11 3.41 30.66 0.10 -6.00 16 3 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 4 C 0.06 0.64 4.88 86.44 0.42 1.06 16 5 N -0.55 -7.95 3.57 -902.36 -3.22 -11.18 16 6 C 0.12 1.75 5.12 85.56 0.44 2.19 16 7 C -0.15 -3.48 4.89 -19.83 -0.10 -3.58 16 8 C -0.04 -1.10 9.69 22.25 0.22 -0.89 16 9 C -0.19 -6.77 9.99 22.39 0.22 -6.54 16 10 C 0.12 5.29 6.65 22.58 0.15 5.44 16 11 O -0.25 -13.11 8.59 -22.77 -0.20 -13.31 16 12 C -0.40 -23.02 9.95 67.92 0.68 -22.34 16 13 H 0.08 4.85 5.44 -2.91 -0.02 4.84 16 14 C 0.01 0.53 5.49 84.83 0.47 1.00 16 15 N -0.92 -54.88 13.96 21.61 0.30 -54.57 16 16 Si 0.97 44.91 28.62 68.60 1.96 46.88 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 20 C -0.24 -9.79 9.17 22.39 0.21 -9.59 16 21 C -0.07 -2.03 7.77 22.25 0.17 -1.85 16 22 C 0.06 1.03 4.54 86.45 0.39 1.43 16 23 C -0.55 -10.09 2.82 30.65 0.09 -10.00 16 24 H 0.15 2.60 7.37 -2.39 -0.02 2.59 16 25 C -0.15 -2.90 9.20 71.98 0.66 -2.24 16 26 S 2.40 47.00 4.28 -56.49 -0.24 46.76 16 27 O -0.98 -25.61 17.70 -127.41 -2.26 -27.86 16 28 O -0.97 -24.65 18.06 -127.41 -2.30 -26.95 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.79 7.96 -2.39 -0.02 0.77 16 31 H 0.08 0.98 6.45 -2.39 -0.02 0.97 16 32 H 0.13 0.64 7.77 -2.39 -0.02 0.62 16 33 H 0.06 0.62 7.93 -2.39 -0.02 0.60 16 34 H 0.06 0.75 8.08 -2.39 -0.02 0.73 16 35 H 0.11 1.11 7.78 -2.38 -0.02 1.09 16 36 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 38 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.10 4.76 5.64 -2.91 -0.02 4.74 16 40 H 0.13 3.27 7.76 -2.91 -0.02 3.25 16 41 H 0.06 1.02 7.93 -2.38 -0.02 1.00 16 42 H 0.10 2.12 4.99 -2.39 -0.01 2.11 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.41 368.71 -0.21 -75.62 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.99 Total: 17.41 kcal Atomic # 6 Polarization: -57.55 SS G_CDS: 4.75 Total: -52.80 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -2.92 Total: -65.75 kcal Atomic # 8 Polarization: -63.37 SS G_CDS: -4.75 Total: -68.12 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.96 Total: 46.88 kcal Atomic # 16 Polarization: 47.00 SS G_CDS: -0.24 Total: 46.76 kcal Total: -75.41 -0.21 -75.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289711269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.742 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds