Wall clock time and date at job start Tue Mar 31 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47398 * 305.00335 * 3 2 1 5 5 C 1.52997 * 109.47060 * 185.00166 * 3 2 1 6 6 S 1.81396 * 109.47360 * 180.02562 * 5 3 2 7 7 O 1.42094 * 110.54259 * 291.62586 * 6 5 3 8 8 O 1.42106 * 110.54167 * 68.37612 * 6 5 3 9 9 C 1.76206 * 104.45095 * 179.97438 * 6 5 3 10 10 C 1.38225 * 120.00117 * 269.72883 * 9 6 5 11 11 C 1.38239 * 120.00152 * 179.76685 * 10 9 6 12 12 C 1.38242 * 119.99692 * 0.50524 * 11 10 9 13 13 C 1.38235 * 119.99692 * 359.74891 * 12 11 10 14 14 C 1.38231 * 119.99517 * 90.00091 * 9 6 5 15 15 N 1.46500 * 109.47023 * 65.00406 * 3 2 1 16 16 C 1.34779 * 119.99793 * 274.99565 * 15 3 2 17 17 O 1.21279 * 120.00185 * 0.02562 * 16 15 3 18 18 C 1.50702 * 119.99614 * 179.97438 * 16 15 3 19 19 C 1.53000 * 109.46917 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47208 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00040 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00122 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99744 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47297 * 59.99452 * 24 22 20 26 26 H 1.48499 * 109.47152 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46799 * 299.99707 * 24 22 20 28 28 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 30 30 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 31 31 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 32 32 H 1.08991 * 109.47210 * 120.00501 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 3 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 5 3 2 35 35 H 1.08000 * 120.00248 * 359.97438 * 10 9 6 36 36 H 1.07996 * 120.00404 * 180.23296 * 11 10 9 37 37 H 1.07993 * 119.99636 * 179.72580 * 12 11 10 38 38 H 1.07997 * 119.99851 * 179.97438 * 13 12 11 39 39 H 1.08003 * 120.00608 * 0.02562 * 14 9 6 40 40 H 0.97004 * 120.00223 * 94.99655 * 15 3 2 41 41 H 1.09002 * 109.47423 * 300.00169 * 18 16 15 42 42 H 1.09002 * 109.46795 * 60.00420 * 18 16 15 43 43 H 1.09002 * 109.47125 * 300.00244 * 19 18 16 44 44 H 1.09002 * 109.47464 * 60.00088 * 19 18 16 45 45 H 0.97004 * 119.99561 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 16 4.1695 3.1546 -0.1250 7 8 3.7735 3.8240 -1.3142 8 8 3.9769 3.7511 1.1504 9 6 5.9187 3.0026 -0.2731 10 6 6.7033 2.9134 0.8615 11 6 8.0751 2.7893 0.7452 12 6 8.6634 2.7648 -0.5055 13 6 7.8792 2.8592 -1.6400 14 6 6.5069 2.9781 -1.5238 15 7 1.6525 2.0974 1.2519 16 6 0.4351 2.6643 1.3670 17 8 -0.3396 2.6319 0.4345 18 6 0.0363 3.3375 2.6550 19 6 -1.3829 3.8934 2.5217 20 6 -1.7815 4.5671 3.8094 21 1 -1.0915 4.5963 4.6397 22 6 -3.0272 5.1462 3.9276 23 7 -3.8672 5.1111 2.9163 24 14 -3.5210 5.9820 5.5235 25 1 -2.5797 7.0936 5.8121 26 1 -4.8985 6.5214 5.3942 27 1 -3.4772 4.9957 6.6329 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9995 0.9053 0.7160 34 1 3.8532 0.9571 -1.0571 35 1 6.2442 2.9374 1.8387 36 1 8.6878 2.7158 1.6316 37 1 9.7355 2.6723 -0.5962 38 1 8.3388 2.8405 -2.6172 39 1 5.8943 3.0526 -2.4102 40 1 2.2720 2.1231 1.9979 41 1 0.0674 2.6128 3.4686 42 1 0.7277 4.1528 2.8680 43 1 -1.4143 4.6180 1.7080 44 1 -2.0741 3.0779 2.3088 45 1 -4.7435 5.5189 2.9994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292023321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:04 Heat of formation + Delta-G solvation = -93.643895 kcal Electronic energy + Delta-G solvation = -27244.892211 eV Core-core repulsion = 23354.381841 eV Total energy + Delta-G solvation = -3890.510370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.67306 -39.52032 -37.28984 -36.34058 -36.05762 -33.39003 -32.29458 -31.77883 -31.48663 -30.81402 -30.26081 -25.79450 -24.35684 -23.50951 -23.19522 -22.08303 -20.75712 -19.77574 -19.28297 -18.26192 -16.97577 -16.68532 -16.61829 -16.25020 -15.97051 -15.59173 -15.19869 -15.01297 -14.94833 -14.40112 -13.99005 -13.87873 -13.73441 -13.45905 -13.43415 -13.12239 -12.64051 -12.50965 -12.20622 -12.15576 -12.10046 -12.05209 -11.73976 -11.71933 -11.36688 -11.14528 -11.08821 -10.87300 -10.80712 -10.64880 -10.56284 -9.86143 -9.84689 -9.60061 -9.51704 -9.13878 -8.98107 -8.86850 -8.25358 -5.89796 -3.93604 -0.27100 0.39213 0.82048 2.62322 3.01642 3.22772 3.32232 3.39538 3.43892 3.46348 3.61233 3.86335 4.11945 4.28295 4.42593 4.51184 4.53062 4.54538 4.84151 4.85214 4.99269 5.06918 5.13099 5.20430 5.33574 5.44891 5.45132 5.54654 5.62414 5.74757 5.78024 5.82067 5.87319 6.03598 6.22731 6.30816 6.35273 6.36933 6.59181 6.65444 6.96936 7.80133 7.82915 7.93716 8.13780 8.45385 8.76080 9.14526 9.69432 11.21160 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.002663 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.356920 B =10510.131367 C =11553.392021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.152 3.848 4 H 0.104 0.896 5 C -0.618 4.618 6 S 2.495 3.505 7 O -0.929 6.929 8 O -0.921 6.921 9 C -0.662 4.662 10 C -0.024 4.024 11 C -0.141 4.141 12 C -0.068 4.068 13 C -0.142 4.142 14 C -0.026 4.026 15 N -0.754 5.754 16 C 0.514 3.486 17 O -0.522 6.522 18 C -0.133 4.133 19 C 0.037 3.963 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.404 0.596 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.564 -12.113 -8.119 31.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.046 3.954 4 H 0.122 0.878 5 C -0.747 4.747 6 S 2.674 3.326 7 O -0.926 6.926 8 O -0.918 6.918 9 C -0.748 4.748 10 C -0.043 4.043 11 C -0.160 4.160 12 C -0.086 4.086 13 C -0.160 4.160 14 C -0.045 4.045 15 N -0.412 5.412 16 C 0.304 3.696 17 O -0.397 6.397 18 C -0.172 4.172 19 C 0.000 4.000 20 C -0.564 4.564 21 H 0.074 0.926 22 C -0.144 4.144 23 N -0.529 5.529 24 Si 0.721 3.279 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.160 0.840 40 H 0.240 0.760 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 26.353 -11.287 -8.806 29.990 hybrid contribution 0.849 -0.262 1.108 1.420 sum 27.202 -11.549 -7.698 30.538 Atomic orbital electron populations 1.21858 0.93937 1.00805 1.04209 1.21877 0.97799 0.94239 1.02146 1.20637 0.88047 0.96524 0.90202 0.87765 1.30668 1.06266 1.25024 1.12767 1.05663 0.74036 0.77604 0.75322 1.93591 1.81032 1.69933 1.48079 1.93592 1.84281 1.72775 1.41127 1.30786 1.26291 1.17985 0.99732 1.21045 0.94204 0.91382 0.97624 1.21355 0.94996 1.01569 0.98096 1.21530 1.00315 0.94034 0.92743 1.21338 0.93825 1.01622 0.99258 1.21036 0.95839 0.91634 0.95987 1.46607 1.18914 1.59829 1.15823 1.21593 0.79835 0.76732 0.91472 1.90685 1.50565 1.57539 1.40887 1.21918 1.03140 0.99966 0.92217 1.18903 0.87535 0.96446 0.97126 1.21196 0.99905 1.36175 0.99152 0.92619 1.25018 0.96648 0.96317 0.96413 1.69990 1.07619 1.44748 1.30548 0.86656 0.77538 0.79850 0.83896 1.20239 1.21350 1.20301 0.93450 0.91459 0.91831 0.91236 0.91543 0.84034 0.83388 0.83809 0.84888 0.85197 0.84937 0.84015 0.76011 0.90121 0.89644 0.95728 0.95815 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.51 37.16 0.32 -1.78 16 2 C -0.12 -1.27 5.61 -26.73 -0.15 -1.42 16 3 C 0.15 1.79 2.31 -67.93 -0.16 1.63 16 4 H 0.10 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.62 -4.60 5.54 37.16 0.21 -4.40 16 6 S 2.49 27.32 4.94 -107.50 -0.53 26.78 16 7 O -0.93 -13.56 17.13 -57.54 -0.99 -14.55 16 8 O -0.92 -12.56 15.86 -57.54 -0.91 -13.47 16 9 C -0.66 -6.00 5.66 -39.59 -0.22 -6.22 16 10 C -0.02 -0.19 9.47 -39.59 -0.37 -0.57 16 11 C -0.14 -0.92 10.05 -39.58 -0.40 -1.32 16 12 C -0.07 -0.40 10.05 -39.58 -0.40 -0.80 16 13 C -0.14 -0.93 10.05 -39.58 -0.40 -1.32 16 14 C -0.03 -0.21 9.47 -39.58 -0.37 -0.59 16 15 N -0.75 -10.64 4.16 -53.81 -0.22 -10.87 16 16 C 0.51 9.92 6.40 -10.98 -0.07 9.85 16 17 O -0.52 -11.80 13.12 5.56 0.07 -11.72 16 18 C -0.13 -2.78 5.64 -27.88 -0.16 -2.94 16 19 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 20 C -0.53 -15.23 9.11 -34.44 -0.31 -15.54 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 24 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.13 5.64 -51.93 -0.29 0.84 16 30 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.14 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.15 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.14 0.97 7.56 -52.49 -0.40 0.58 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.14 1.00 7.57 -52.48 -0.40 0.60 16 40 H 0.40 4.67 7.92 -40.82 -0.32 4.35 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 43 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -39.08 384.46 -10.60 -49.68 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.82 Total: 1.28 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -2.71 Total: -22.91 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.51 Total: -37.97 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.82 Total: -39.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 27.32 SS G_CDS: -0.53 Total: 26.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.08 -10.60 -49.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292023321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.962 kcal (2) G-P(sol) polarization free energy of solvation -39.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds