Wall clock time and date at job start Tue Mar 31 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47398 * 305.00335 * 3 2 1 5 5 C 1.52997 * 109.47060 * 185.00166 * 3 2 1 6 6 S 1.81396 * 109.47360 * 180.02562 * 5 3 2 7 7 O 1.42094 * 110.54259 * 291.62586 * 6 5 3 8 8 O 1.42106 * 110.54167 * 68.37612 * 6 5 3 9 9 C 1.76206 * 104.45095 * 179.97438 * 6 5 3 10 10 C 1.38225 * 120.00117 * 269.72883 * 9 6 5 11 11 C 1.38239 * 120.00152 * 179.76685 * 10 9 6 12 12 C 1.38242 * 119.99692 * 0.50524 * 11 10 9 13 13 C 1.38235 * 119.99692 * 359.74891 * 12 11 10 14 14 C 1.38231 * 119.99517 * 90.00091 * 9 6 5 15 15 N 1.46500 * 109.47023 * 65.00406 * 3 2 1 16 16 C 1.34779 * 119.99793 * 274.99565 * 15 3 2 17 17 O 1.21279 * 120.00185 * 0.02562 * 16 15 3 18 18 C 1.50702 * 119.99614 * 179.97438 * 16 15 3 19 19 C 1.53000 * 109.46917 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47208 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00040 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00122 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99744 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00146 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47297 * 59.99452 * 24 22 20 26 26 H 1.48499 * 109.47152 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46799 * 299.99707 * 24 22 20 28 28 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 30 30 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 31 31 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 32 32 H 1.08991 * 109.47210 * 120.00501 * 2 1 3 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 3 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 5 3 2 35 35 H 1.08000 * 120.00248 * 359.97438 * 10 9 6 36 36 H 1.07996 * 120.00404 * 180.23296 * 11 10 9 37 37 H 1.07993 * 119.99636 * 179.72580 * 12 11 10 38 38 H 1.07997 * 119.99851 * 179.97438 * 13 12 11 39 39 H 1.08003 * 120.00608 * 0.02562 * 14 9 6 40 40 H 0.97004 * 120.00223 * 94.99655 * 15 3 2 41 41 H 1.09002 * 109.47423 * 300.00169 * 18 16 15 42 42 H 1.09002 * 109.46795 * 60.00420 * 18 16 15 43 43 H 1.09002 * 109.47125 * 300.00244 * 19 18 16 44 44 H 1.09002 * 109.47464 * 60.00088 * 19 18 16 45 45 H 0.97004 * 119.99561 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 16 4.1695 3.1546 -0.1250 7 8 3.7735 3.8240 -1.3142 8 8 3.9769 3.7511 1.1504 9 6 5.9187 3.0026 -0.2731 10 6 6.7033 2.9134 0.8615 11 6 8.0751 2.7893 0.7452 12 6 8.6634 2.7648 -0.5055 13 6 7.8792 2.8592 -1.6400 14 6 6.5069 2.9781 -1.5238 15 7 1.6525 2.0974 1.2519 16 6 0.4351 2.6643 1.3670 17 8 -0.3396 2.6319 0.4345 18 6 0.0363 3.3375 2.6550 19 6 -1.3829 3.8934 2.5217 20 6 -1.7815 4.5671 3.8094 21 1 -1.0915 4.5963 4.6397 22 6 -3.0272 5.1462 3.9276 23 7 -3.8672 5.1111 2.9163 24 14 -3.5210 5.9820 5.5235 25 1 -2.5797 7.0936 5.8121 26 1 -4.8985 6.5214 5.3942 27 1 -3.4772 4.9957 6.6329 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9995 0.9053 0.7160 34 1 3.8532 0.9571 -1.0571 35 1 6.2442 2.9374 1.8387 36 1 8.6878 2.7158 1.6316 37 1 9.7355 2.6723 -0.5962 38 1 8.3388 2.8405 -2.6172 39 1 5.8943 3.0526 -2.4102 40 1 2.2720 2.1231 1.9979 41 1 0.0674 2.6128 3.4686 42 1 0.7277 4.1528 2.8680 43 1 -1.4143 4.6180 1.7080 44 1 -2.0741 3.0779 2.3088 45 1 -4.7435 5.5189 2.9994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292023321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:03 Heat of formation + Delta-G solvation = -122.430138 kcal Electronic energy + Delta-G solvation = -27246.140476 eV Core-core repulsion = 23354.381841 eV Total energy + Delta-G solvation = -3891.758635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07559 -40.02577 -38.22887 -37.57126 -37.00131 -35.53470 -33.69490 -32.59542 -32.30771 -31.97867 -31.30961 -27.76519 -25.42791 -24.10799 -23.86261 -23.68951 -21.90018 -21.34078 -20.07604 -18.96745 -18.83120 -17.74924 -17.60587 -17.33003 -16.91315 -16.76778 -16.57516 -16.43487 -15.70321 -15.49498 -15.18009 -14.92629 -14.66959 -14.46567 -14.28047 -14.10397 -14.00315 -13.84861 -13.37135 -13.22362 -13.21225 -13.12980 -13.09147 -12.79097 -12.69077 -12.53312 -12.36167 -12.19236 -11.95201 -11.89862 -11.74805 -11.62046 -11.44042 -11.31021 -10.70221 -10.55286 -10.38330 -10.11101 -10.02416 -8.17139 -6.31021 -1.04113 -0.17066 0.31829 1.41405 1.46621 1.54148 1.69012 1.86962 2.13686 2.44458 2.46481 2.87316 3.09675 3.15417 3.30319 3.75691 3.87986 3.98121 3.98864 4.03023 4.13331 4.23678 4.41466 4.44723 4.46804 4.49194 4.53871 4.56666 4.72332 4.72618 4.91710 4.98632 5.02466 5.06980 5.11437 5.18349 5.29540 5.40742 5.42430 5.51082 5.51397 5.64730 5.86067 5.88740 6.19201 6.52429 6.86612 7.30776 7.38760 8.95317 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.002663 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.356920 B =10510.131367 C =11553.392021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C 0.139 3.861 4 H 0.077 0.923 5 C -0.589 4.589 6 S 2.480 3.520 7 O -0.982 6.982 8 O -0.961 6.961 9 C -0.664 4.664 10 C -0.041 4.041 11 C -0.145 4.145 12 C -0.066 4.066 13 C -0.145 4.145 14 C -0.047 4.047 15 N -0.734 5.734 16 C 0.515 3.485 17 O -0.566 6.566 18 C -0.126 4.126 19 C 0.045 3.955 20 C -0.545 4.545 21 H 0.074 0.926 22 C -0.007 4.007 23 N -0.937 5.937 24 Si 0.974 3.026 25 H -0.265 1.265 26 H -0.286 1.286 27 H -0.260 1.260 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.186 0.814 34 H 0.190 0.810 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.143 0.857 40 H 0.419 0.581 41 H 0.108 0.892 42 H 0.096 0.904 43 H -0.020 1.020 44 H -0.012 1.012 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.282 -14.080 -6.626 34.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.721 4.721 6 S 2.666 3.334 7 O -0.980 6.980 8 O -0.958 6.958 9 C -0.753 4.753 10 C -0.060 4.060 11 C -0.163 4.163 12 C -0.084 4.084 13 C -0.164 4.164 14 C -0.066 4.066 15 N -0.392 5.392 16 C 0.304 3.696 17 O -0.445 6.445 18 C -0.166 4.166 19 C 0.007 3.993 20 C -0.583 4.583 21 H 0.092 0.908 22 C -0.204 4.204 23 N -0.577 5.577 24 Si 0.798 3.202 25 H -0.189 1.189 26 H -0.212 1.212 27 H -0.185 1.185 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.204 0.796 34 H 0.207 0.793 35 H 0.168 0.832 36 H 0.175 0.825 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.161 0.839 40 H 0.258 0.742 41 H 0.126 0.874 42 H 0.115 0.885 43 H -0.002 1.002 44 H 0.006 0.994 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 30.119 -13.242 -7.293 33.700 hybrid contribution -0.211 0.282 0.569 0.669 sum 29.908 -12.959 -6.724 33.281 Atomic orbital electron populations 1.21834 0.97013 1.00946 1.01261 1.21887 0.94880 0.93310 1.05180 1.20883 0.90938 0.97010 0.87797 0.90449 1.30496 1.02535 1.22042 1.17039 1.05556 0.74976 0.79134 0.73699 1.93529 1.82393 1.72593 1.49438 1.93537 1.85296 1.74942 1.42025 1.30305 1.24277 1.20043 1.00686 1.21283 0.95150 0.91941 0.97578 1.21720 0.94519 1.00581 0.99502 1.21963 1.01909 0.92369 0.92159 1.21687 0.93129 1.00680 1.00865 1.21246 0.97005 0.92504 0.95795 1.46322 1.17089 1.58301 1.17441 1.21183 0.81207 0.77016 0.90235 1.90675 1.52363 1.59458 1.41956 1.21697 0.99322 1.01111 0.94458 1.18667 0.90948 0.94268 0.95415 1.21689 1.00562 1.36120 0.99922 0.90804 1.26140 0.96640 0.97008 1.00659 1.70175 1.08165 1.45933 1.33401 0.85373 0.77118 0.78953 0.78794 1.18949 1.21177 1.18479 0.91627 0.94990 0.94366 0.87623 0.88903 0.79640 0.79263 0.83174 0.82457 0.82138 0.82595 0.83902 0.74213 0.87429 0.88537 1.00172 0.99407 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 8.51 71.98 0.61 -3.66 16 2 C -0.11 -2.06 5.61 30.60 0.17 -1.89 16 3 C 0.14 3.09 2.31 44.99 0.10 3.19 16 4 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 5 C -0.59 -6.98 5.54 71.98 0.40 -6.58 16 6 S 2.48 53.83 4.94 -56.49 -0.28 53.55 16 7 O -0.98 -30.23 17.13 -127.65 -2.19 -32.42 16 8 O -0.96 -26.55 15.86 -127.65 -2.02 -28.58 16 9 C -0.66 -11.22 5.66 22.26 0.13 -11.09 16 10 C -0.04 -0.58 9.47 22.27 0.21 -0.36 16 11 C -0.14 -1.44 10.05 22.27 0.22 -1.22 16 12 C -0.07 -0.55 10.05 22.27 0.22 -0.33 16 13 C -0.14 -1.51 10.05 22.27 0.22 -1.29 16 14 C -0.05 -0.70 9.47 22.27 0.21 -0.49 16 15 N -0.73 -20.44 4.16 -442.53 -1.84 -22.28 16 16 C 0.52 20.72 6.40 87.66 0.56 21.28 16 17 O -0.57 -27.58 13.12 -3.03 -0.04 -27.61 16 18 C -0.13 -5.46 5.64 29.85 0.17 -5.29 16 19 C 0.04 2.59 4.26 29.85 0.13 2.72 16 20 C -0.55 -32.31 9.11 25.60 0.23 -32.08 16 21 H 0.07 4.01 7.74 -2.91 -0.02 3.98 16 22 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 23 N -0.94 -61.00 13.29 21.45 0.28 -60.71 16 24 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 25 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 27 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.03 1.10 5.64 -2.39 -0.01 1.09 16 30 H 0.04 1.22 7.85 -2.39 -0.02 1.20 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.19 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.19 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.15 1.80 7.56 -2.91 -0.02 1.78 16 36 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 38 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 39 H 0.14 1.98 7.57 -2.91 -0.02 1.96 16 40 H 0.42 9.04 7.92 -92.71 -0.73 8.31 16 41 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 42 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 43 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 44 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 45 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -93.36 384.46 0.25 -93.11 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.25 Total: 14.22 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 4.06 Total: -37.05 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.55 Total: -82.99 kcal Atomic # 8 Polarization: -84.36 SS G_CDS: -4.25 Total: -88.61 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 53.83 SS G_CDS: -0.28 Total: 53.55 kcal Total: -93.36 0.25 -93.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292023321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.320 kcal (2) G-P(sol) polarization free energy of solvation -93.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds