Wall clock time and date at job start Tue Mar 31 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 6 6 S 1.81395 * 109.47315 * 184.99910 * 5 3 2 7 7 O 1.42092 * 110.54539 * 291.62705 * 6 5 3 8 8 O 1.42108 * 110.54157 * 68.38154 * 6 5 3 9 9 C 1.76199 * 104.44810 * 180.02562 * 6 5 3 10 10 C 1.38243 * 119.99967 * 269.72946 * 9 6 5 11 11 C 1.38228 * 119.99599 * 179.76650 * 10 9 6 12 12 C 1.38240 * 120.00210 * 0.50959 * 11 10 9 13 13 C 1.38234 * 119.99968 * 359.74114 * 12 11 10 14 14 C 1.38232 * 120.00042 * 90.00795 * 9 6 5 15 15 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 16 16 C 1.34777 * 120.00027 * 84.99801 * 15 3 2 17 17 O 1.21281 * 120.00120 * 0.02562 * 16 15 3 18 18 C 1.50696 * 120.00025 * 179.97438 * 16 15 3 19 19 C 1.53004 * 109.47576 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47576 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00055 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00162 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00080 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47472 * 89.99851 * 24 22 20 26 26 H 1.48506 * 109.47257 * 210.00239 * 24 22 20 27 27 H 1.48499 * 109.47338 * 329.99968 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.08991 * 109.46949 * 305.00667 * 5 3 2 34 34 H 1.09000 * 109.46469 * 65.00350 * 5 3 2 35 35 H 1.07996 * 119.99987 * 0.02562 * 10 9 6 36 36 H 1.08001 * 119.99931 * 180.22813 * 11 10 9 37 37 H 1.08004 * 119.99847 * 179.72597 * 12 11 10 38 38 H 1.08000 * 119.99973 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.00035 * 359.97438 * 14 9 6 40 40 H 0.96998 * 120.00208 * 264.99507 * 15 3 2 41 41 H 1.09000 * 109.47302 * 299.99971 * 18 16 15 42 42 H 1.08997 * 109.47408 * 60.00133 * 18 16 15 43 43 H 1.09000 * 109.46863 * 300.00340 * 19 18 16 44 44 H 1.09006 * 109.46691 * 59.99578 * 19 18 16 45 45 H 0.97004 * 120.00105 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 16 4.1572 3.1524 0.2744 7 8 3.9597 3.8565 -0.9439 8 8 3.7570 3.7126 1.5176 9 6 5.9075 3.0006 0.4090 10 6 6.4969 2.8769 1.6533 11 6 7.8696 2.7529 1.7585 12 6 8.6539 2.7633 0.6202 13 6 8.0649 2.8922 -0.6237 14 6 6.6917 3.0110 -0.7293 15 7 1.6524 2.0975 -1.2518 16 6 0.4351 2.6644 -1.3669 17 8 -0.3393 2.6327 -0.4340 18 6 0.0366 3.3387 -2.6543 19 6 -1.3827 3.8944 -2.5211 20 6 -1.7810 4.5692 -3.8083 21 1 -1.0910 4.5985 -4.6385 22 6 -3.0266 5.1483 -3.9263 23 7 -3.3740 5.7377 -5.0495 24 14 -4.2203 5.0971 -2.4904 25 1 -4.0185 6.2947 -1.6358 26 1 -5.6134 5.0852 -3.0050 27 1 -3.9783 3.8706 -1.6889 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8570 0.8801 1.0112 34 1 4.0029 0.9837 -0.7597 35 1 5.8845 2.8729 2.5429 36 1 8.3298 2.6526 2.7304 37 1 9.7268 2.6709 0.7027 38 1 8.6776 2.9007 -1.5131 39 1 6.2316 3.1118 -1.7012 40 1 2.2718 2.1232 -1.9978 41 1 0.7280 4.1542 -2.8665 42 1 0.0679 2.6147 -3.4685 43 1 -2.0738 3.0786 -2.3091 44 1 -1.4145 4.6183 -1.7067 45 1 -4.2505 6.1448 -5.1327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292023326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:08 Heat of formation + Delta-G solvation = -91.009049 kcal Electronic energy + Delta-G solvation = -27285.958767 eV Core-core repulsion = 23395.562653 eV Total energy + Delta-G solvation = -3890.396114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.79587 -39.54833 -37.33489 -36.45293 -36.11343 -33.43495 -32.38020 -31.80785 -31.51063 -31.08353 -30.43807 -26.18905 -24.42747 -23.54241 -23.21866 -21.89419 -20.76160 -19.79743 -19.32151 -18.30175 -17.25864 -16.74263 -16.71931 -16.34885 -16.06159 -15.81675 -15.32084 -15.05322 -14.98255 -14.12285 -14.01347 -13.92785 -13.88688 -13.49414 -13.47486 -13.20348 -12.68511 -12.62045 -12.50745 -12.27181 -12.24985 -12.19711 -11.81920 -11.74308 -11.46673 -11.35182 -11.19124 -10.95493 -10.86427 -10.70780 -10.09579 -9.98532 -9.87360 -9.72949 -9.54029 -9.23071 -9.11555 -8.97419 -8.45102 -5.97404 -3.95690 -0.31550 0.36509 0.79830 2.57302 2.98817 3.08338 3.22992 3.42803 3.48960 3.56324 3.59521 3.81500 4.04687 4.25044 4.40481 4.48969 4.50247 4.56067 4.75590 4.82351 4.94102 5.01394 5.06521 5.18121 5.23159 5.38169 5.42590 5.44259 5.59660 5.66818 5.72453 5.72745 5.85274 5.95111 6.11781 6.15867 6.20126 6.32972 6.47871 6.54746 6.76409 7.42454 7.49640 7.69028 7.84710 8.54016 8.63915 9.06288 9.65729 11.15486 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002721 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.888507 B =10289.593460 C =11071.854869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.153 3.847 4 H 0.104 0.896 5 C -0.618 4.618 6 S 2.493 3.507 7 O -0.919 6.919 8 O -0.930 6.930 9 C -0.662 4.662 10 C -0.026 4.026 11 C -0.142 4.142 12 C -0.068 4.068 13 C -0.141 4.141 14 C -0.023 4.023 15 N -0.749 5.749 16 C 0.515 3.485 17 O -0.529 6.529 18 C -0.125 4.125 19 C 0.001 3.999 20 C -0.523 4.523 21 H 0.073 0.927 22 C 0.068 3.932 23 N -0.904 5.904 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.261 1.261 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.405 0.595 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.023 0.977 44 H 0.020 0.980 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.827 -13.712 12.828 32.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.046 3.954 4 H 0.121 0.879 5 C -0.748 4.748 6 S 2.672 3.328 7 O -0.916 6.916 8 O -0.927 6.927 9 C -0.748 4.748 10 C -0.045 4.045 11 C -0.161 4.161 12 C -0.086 4.086 13 C -0.160 4.160 14 C -0.042 4.042 15 N -0.406 5.406 16 C 0.304 3.696 17 O -0.404 6.404 18 C -0.164 4.164 19 C -0.037 4.037 20 C -0.561 4.561 21 H 0.091 0.909 22 C -0.133 4.133 23 N -0.543 5.543 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.185 1.185 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.240 0.760 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 25.653 -12.852 13.434 31.682 hybrid contribution 0.505 -0.654 0.315 0.884 sum 26.158 -13.506 13.749 32.491 Atomic orbital electron populations 1.21860 0.94036 1.00862 1.04074 1.21879 0.97726 0.94204 1.02292 1.20635 0.88180 0.96515 0.90045 0.87860 1.30681 1.06076 1.25109 1.12908 1.05698 0.74128 0.77618 0.75329 1.93604 1.84203 1.68175 1.45643 1.93592 1.80997 1.74309 1.43849 1.30760 1.26201 1.18067 0.99780 1.21028 0.95836 0.91664 0.95983 1.21338 0.93818 1.01682 0.99215 1.21537 1.00348 0.93960 0.92729 1.21359 0.94977 1.01428 0.98206 1.21052 0.94222 0.91371 0.97585 1.46493 1.18678 1.59583 1.15840 1.21565 0.79963 0.76698 0.91364 1.90670 1.50772 1.57993 1.40993 1.21714 1.01906 1.00357 0.92452 1.19382 0.90168 0.96467 0.97647 1.21117 1.00956 1.35414 0.98601 0.90881 1.24971 0.98049 0.94605 0.95667 1.69916 1.21163 1.37633 1.25625 0.86799 0.80039 0.79583 0.83135 1.20231 1.21546 1.18521 0.91881 0.93375 0.91536 0.91151 0.91415 0.83332 0.83931 0.84036 0.84932 0.85169 0.84843 0.83784 0.75957 0.89020 0.89474 0.95822 0.96173 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.51 37.16 0.32 -1.65 16 2 C -0.12 -1.19 5.61 -26.73 -0.15 -1.34 16 3 C 0.15 1.68 2.25 -67.93 -0.15 1.53 16 4 H 0.10 1.33 7.58 -51.93 -0.39 0.94 16 5 C -0.62 -4.28 5.50 37.16 0.20 -4.07 16 6 S 2.49 26.24 5.00 -107.50 -0.54 25.70 16 7 O -0.92 -12.32 16.32 -57.54 -0.94 -13.26 16 8 O -0.93 -13.03 17.12 -57.54 -0.99 -14.02 16 9 C -0.66 -5.81 5.66 -39.58 -0.22 -6.03 16 10 C -0.03 -0.21 9.47 -39.58 -0.37 -0.58 16 11 C -0.14 -0.89 10.05 -39.58 -0.40 -1.29 16 12 C -0.07 -0.39 10.05 -39.58 -0.40 -0.79 16 13 C -0.14 -0.90 10.05 -39.58 -0.40 -1.30 16 14 C -0.02 -0.18 9.47 -39.59 -0.37 -0.56 16 15 N -0.75 -9.89 4.28 -53.80 -0.23 -10.12 16 16 C 0.51 9.31 6.40 -10.99 -0.07 9.24 16 17 O -0.53 -11.16 13.12 5.56 0.07 -11.08 16 18 C -0.12 -2.48 5.64 -27.88 -0.16 -2.63 16 19 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 20 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 21 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 23 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 24 Si 0.88 22.95 27.47 -169.99 -4.67 18.29 16 25 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 28 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.04 5.65 -51.93 -0.29 0.75 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.15 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.14 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.14 0.95 7.57 -52.49 -0.40 0.55 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 38 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.14 0.95 7.57 -52.49 -0.40 0.56 16 40 H 0.41 4.28 8.35 -40.82 -0.34 3.94 16 41 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 42 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 44 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -39.28 381.85 -10.27 -49.54 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.81 Total: 0.00 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -2.70 Total: -23.14 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.54 Total: -37.79 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.85 Total: -38.36 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.29 kcal Atomic # 16 Polarization: 26.24 SS G_CDS: -0.54 Total: 25.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.28 -10.27 -49.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292023326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.465 kcal (2) G-P(sol) polarization free energy of solvation -39.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds