Wall clock time and date at job start Tue Mar 31 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.53002 * 109.47645 * 174.99822 * 3 2 1 6 6 S 1.81395 * 109.47315 * 184.99910 * 5 3 2 7 7 O 1.42092 * 110.54539 * 291.62705 * 6 5 3 8 8 O 1.42108 * 110.54157 * 68.38154 * 6 5 3 9 9 C 1.76199 * 104.44810 * 180.02562 * 6 5 3 10 10 C 1.38243 * 119.99967 * 269.72946 * 9 6 5 11 11 C 1.38228 * 119.99599 * 179.76650 * 10 9 6 12 12 C 1.38240 * 120.00210 * 0.50959 * 11 10 9 13 13 C 1.38234 * 119.99968 * 359.74114 * 12 11 10 14 14 C 1.38232 * 120.00042 * 90.00795 * 9 6 5 15 15 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 16 16 C 1.34777 * 120.00027 * 84.99801 * 15 3 2 17 17 O 1.21281 * 120.00120 * 0.02562 * 16 15 3 18 18 C 1.50696 * 120.00025 * 179.97438 * 16 15 3 19 19 C 1.53004 * 109.47576 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47576 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00055 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00162 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00080 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47472 * 89.99851 * 24 22 20 26 26 H 1.48506 * 109.47257 * 210.00239 * 24 22 20 27 27 H 1.48499 * 109.47338 * 329.99968 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.08991 * 109.46949 * 305.00667 * 5 3 2 34 34 H 1.09000 * 109.46469 * 65.00350 * 5 3 2 35 35 H 1.07996 * 119.99987 * 0.02562 * 10 9 6 36 36 H 1.08001 * 119.99931 * 180.22813 * 11 10 9 37 37 H 1.08004 * 119.99847 * 179.72597 * 12 11 10 38 38 H 1.08000 * 119.99973 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.00035 * 359.97438 * 14 9 6 40 40 H 0.96998 * 120.00208 * 264.99507 * 15 3 2 41 41 H 1.09000 * 109.47302 * 299.99971 * 18 16 15 42 42 H 1.08997 * 109.47408 * 60.00133 * 18 16 15 43 43 H 1.09000 * 109.46863 * 300.00340 * 19 18 16 44 44 H 1.09006 * 109.46691 * 59.99578 * 19 18 16 45 45 H 0.97004 * 120.00105 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 16 4.1572 3.1524 0.2744 7 8 3.9597 3.8565 -0.9439 8 8 3.7570 3.7126 1.5176 9 6 5.9075 3.0006 0.4090 10 6 6.4969 2.8769 1.6533 11 6 7.8696 2.7529 1.7585 12 6 8.6539 2.7633 0.6202 13 6 8.0649 2.8922 -0.6237 14 6 6.6917 3.0110 -0.7293 15 7 1.6524 2.0975 -1.2518 16 6 0.4351 2.6644 -1.3669 17 8 -0.3393 2.6327 -0.4340 18 6 0.0366 3.3387 -2.6543 19 6 -1.3827 3.8944 -2.5211 20 6 -1.7810 4.5692 -3.8083 21 1 -1.0910 4.5985 -4.6385 22 6 -3.0266 5.1483 -3.9263 23 7 -3.3740 5.7377 -5.0495 24 14 -4.2203 5.0971 -2.4904 25 1 -4.0185 6.2947 -1.6358 26 1 -5.6134 5.0852 -3.0050 27 1 -3.9783 3.8706 -1.6889 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.8570 0.8801 1.0112 34 1 4.0029 0.9837 -0.7597 35 1 5.8845 2.8729 2.5429 36 1 8.3298 2.6526 2.7304 37 1 9.7268 2.6709 0.7027 38 1 8.6776 2.9007 -1.5131 39 1 6.2316 3.1118 -1.7012 40 1 2.2718 2.1232 -1.9978 41 1 0.7280 4.1542 -2.8665 42 1 0.0679 2.6147 -3.4685 43 1 -2.0738 3.0786 -2.3091 44 1 -1.4145 4.6183 -1.7067 45 1 -4.2505 6.1448 -5.1327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292023326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:07 Heat of formation + Delta-G solvation = -120.053739 kcal Electronic energy + Delta-G solvation = -27287.218239 eV Core-core repulsion = 23395.562653 eV Total energy + Delta-G solvation = -3891.655586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.09531 -40.03038 -38.22966 -37.58880 -37.01049 -35.51824 -33.75869 -32.86510 -32.31381 -31.98448 -31.34790 -28.06433 -25.38899 -24.10974 -23.69695 -23.52116 -21.87141 -21.33033 -20.07990 -19.22431 -18.95936 -17.86131 -17.61617 -17.35879 -16.92276 -16.79270 -16.57771 -16.24697 -15.70904 -15.49925 -15.26744 -15.01051 -14.67442 -14.57220 -14.47155 -14.15371 -14.01426 -13.93443 -13.42932 -13.38809 -13.21896 -13.16125 -13.09636 -12.90668 -12.68140 -12.42621 -12.19735 -12.04816 -11.97514 -11.93627 -11.77859 -11.72647 -11.44905 -11.39265 -10.77919 -10.73999 -10.38942 -10.11112 -10.03024 -8.31117 -6.33801 -1.04269 -0.17592 0.31301 1.33392 1.34414 1.49820 1.66209 1.85687 2.12946 2.35159 2.45915 2.86916 3.04407 3.09240 3.29120 3.75978 3.87189 3.96570 3.97918 3.98245 4.12794 4.23150 4.39291 4.40903 4.46228 4.46886 4.49842 4.50565 4.71903 4.72240 4.91981 4.98024 4.99198 5.04963 5.10797 5.17499 5.29062 5.32926 5.40352 5.44952 5.46276 5.51179 5.61767 5.88185 6.24314 6.50689 6.72330 7.26886 7.31158 8.84697 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002721 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.888507 B =10289.593460 C =11071.854869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C 0.140 3.860 4 H 0.080 0.920 5 C -0.590 4.590 6 S 2.479 3.521 7 O -0.962 6.962 8 O -0.980 6.980 9 C -0.665 4.665 10 C -0.046 4.046 11 C -0.145 4.145 12 C -0.066 4.066 13 C -0.145 4.145 14 C -0.041 4.041 15 N -0.732 5.732 16 C 0.518 3.482 17 O -0.566 6.566 18 C -0.123 4.123 19 C 0.006 3.994 20 C -0.529 4.529 21 H 0.049 0.951 22 C 0.013 3.987 23 N -0.944 5.944 24 Si 0.939 3.061 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.259 1.259 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.191 0.809 34 H 0.184 0.816 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.419 0.581 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.015 0.985 44 H 0.006 0.994 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.625 -16.307 13.964 36.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.098 0.902 5 C -0.722 4.722 6 S 2.666 3.334 7 O -0.959 6.959 8 O -0.977 6.977 9 C -0.754 4.754 10 C -0.065 4.065 11 C -0.163 4.163 12 C -0.084 4.084 13 C -0.164 4.164 14 C -0.060 4.060 15 N -0.388 5.388 16 C 0.306 3.694 17 O -0.444 6.444 18 C -0.163 4.163 19 C -0.032 4.032 20 C -0.567 4.567 21 H 0.067 0.933 22 C -0.185 4.185 23 N -0.584 5.584 24 Si 0.763 3.237 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.183 1.183 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.208 0.792 34 H 0.202 0.798 35 H 0.163 0.837 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.257 0.743 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.033 0.967 44 H 0.024 0.976 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 28.485 -15.427 14.559 35.515 hybrid contribution -0.222 0.106 -0.077 0.258 sum 28.263 -15.321 14.482 35.260 Atomic orbital electron populations 1.21843 0.96794 1.01029 1.01444 1.21892 0.95129 0.93248 1.05124 1.20881 0.90813 0.97033 0.87802 0.90234 1.30508 1.02705 1.21934 1.17024 1.05592 0.74948 0.79214 0.73694 1.93549 1.85207 1.70687 1.46497 1.93531 1.82243 1.76687 1.45285 1.30323 1.24381 1.19972 1.00684 1.21251 0.96968 0.92436 0.95812 1.21693 0.93172 1.00720 1.00762 1.21962 1.01928 0.92381 0.92149 1.21712 0.94528 1.00555 0.99603 1.21275 0.95163 0.92034 0.97564 1.46259 1.17042 1.58135 1.17383 1.21062 0.81295 0.76999 0.90033 1.90659 1.52292 1.59675 1.41768 1.21548 0.98824 1.01233 0.94650 1.19220 0.93395 0.95571 0.95007 1.21434 1.00583 1.35286 0.99389 0.93274 1.25810 1.00030 0.94445 0.98195 1.70027 1.22024 1.38830 1.27555 0.85824 0.78283 0.79655 0.79924 1.19679 1.20171 1.18307 0.94085 0.91724 0.94692 0.87734 0.89031 0.79167 0.79797 0.83739 0.82542 0.82177 0.82577 0.83322 0.74262 0.88609 0.87554 0.96657 0.97576 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 8.51 71.98 0.61 -3.22 16 2 C -0.11 -1.85 5.61 30.59 0.17 -1.68 16 3 C 0.14 2.80 2.25 44.99 0.10 2.90 16 4 H 0.08 2.03 7.58 -2.38 -0.02 2.01 16 5 C -0.59 -6.19 5.50 71.98 0.40 -5.79 16 6 S 2.48 51.09 5.00 -56.49 -0.28 50.81 16 7 O -0.96 -26.20 16.32 -127.65 -2.08 -28.29 16 8 O -0.98 -28.43 17.12 -127.65 -2.19 -30.61 16 9 C -0.66 -10.84 5.66 22.27 0.13 -10.71 16 10 C -0.05 -0.65 9.47 22.27 0.21 -0.44 16 11 C -0.14 -1.43 10.05 22.27 0.22 -1.21 16 12 C -0.07 -0.54 10.05 22.27 0.22 -0.32 16 13 C -0.15 -1.45 10.05 22.27 0.22 -1.23 16 14 C -0.04 -0.58 9.47 22.27 0.21 -0.37 16 15 N -0.73 -18.51 4.28 -442.53 -1.89 -20.40 16 16 C 0.52 18.87 6.40 87.66 0.56 19.43 16 17 O -0.57 -24.49 13.12 -3.03 -0.04 -24.53 16 18 C -0.12 -4.95 5.64 29.85 0.17 -4.78 16 19 C 0.01 0.31 3.33 29.85 0.10 0.41 16 20 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 21 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 22 C 0.01 0.78 5.47 84.65 0.46 1.24 16 23 N -0.94 -60.51 13.96 21.45 0.30 -60.21 16 24 Si 0.94 48.14 27.47 68.60 1.88 50.02 16 25 H -0.27 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.26 -13.09 6.54 99.48 0.65 -12.44 16 28 H 0.04 1.17 7.85 -2.39 -0.02 1.15 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.03 1.08 5.65 -2.38 -0.01 1.07 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.19 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.18 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.14 1.84 7.57 -2.91 -0.02 1.82 16 36 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 37 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 38 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 39 H 0.15 1.81 7.57 -2.91 -0.02 1.79 16 40 H 0.42 8.11 8.35 -92.71 -0.77 7.34 16 41 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 42 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 43 H 0.02 0.80 7.16 -2.39 -0.02 0.79 16 44 H 0.01 0.32 7.53 -2.38 -0.02 0.30 16 45 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -90.20 381.85 -0.10 -90.30 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.16 Total: 10.04 kcal Atomic # 6 Polarization: -41.16 SS G_CDS: 4.04 Total: -37.12 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.59 Total: -80.62 kcal Atomic # 8 Polarization: -79.12 SS G_CDS: -4.31 Total: -83.43 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 1.88 Total: 50.02 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.28 Total: 50.81 kcal Total: -90.20 -0.10 -90.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292023326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.751 kcal (2) G-P(sol) polarization free energy of solvation -90.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds