Wall clock time and date at job start Tue Mar 31 2020 23:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46432 * 2 1 4 4 C 1.50697 * 109.47355 * 119.99905 * 2 1 3 5 5 C 1.38232 * 119.99960 * 330.11132 * 4 2 1 6 6 C 1.38234 * 120.00183 * 179.81059 * 5 4 2 7 7 C 1.38241 * 119.99954 * 0.41925 * 6 5 4 8 8 S 1.76201 * 120.00397 * 179.79222 * 7 6 5 9 9 C 1.81401 * 104.44545 * 270.02383 * 8 7 6 10 10 O 1.42099 * 104.27490 * 26.09391 * 8 7 6 11 11 O 1.42097 * 104.27864 * 153.95132 * 8 7 6 12 12 C 1.38236 * 119.99390 * 359.81406 * 7 6 5 13 13 C 1.38230 * 120.00402 * 359.97438 * 12 7 6 14 14 N 1.46499 * 109.46970 * 240.00388 * 2 1 3 15 15 C 1.46501 * 119.99699 * 305.12896 * 14 2 1 16 16 C 1.34774 * 120.00038 * 125.13842 * 14 2 1 17 17 O 1.21278 * 120.00000 * 359.97438 * 16 14 2 18 18 C 1.50699 * 119.99887 * 179.97438 * 16 14 2 19 19 C 1.53001 * 109.47356 * 179.97438 * 18 16 14 20 20 C 1.50699 * 109.47356 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99897 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00018 * 180.02562 * 20 19 18 23 23 N 1.31507 * 119.99952 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99906 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47304 * 90.00066 * 24 22 20 26 26 H 1.48503 * 109.47017 * 210.00263 * 24 22 20 27 27 H 1.48503 * 109.47432 * 329.99916 * 24 22 20 28 28 H 1.09004 * 109.47087 * 299.99591 * 1 2 3 29 29 H 1.08996 * 109.47688 * 59.99983 * 1 2 3 30 30 H 1.09003 * 109.47044 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.00316 * 359.97438 * 5 4 2 32 32 H 1.08004 * 120.00741 * 180.21137 * 6 5 4 33 33 H 1.08999 * 109.47476 * 59.99927 * 9 8 7 34 34 H 1.09005 * 109.46918 * 180.02562 * 9 8 7 35 35 H 1.08999 * 109.46861 * 299.99265 * 9 8 7 36 36 H 1.08010 * 119.99648 * 179.97438 * 12 7 6 37 37 H 1.08006 * 120.00212 * 179.97438 * 13 12 7 38 38 H 1.09001 * 109.46645 * 95.30266 * 15 14 2 39 39 H 1.08998 * 109.47061 * 215.29776 * 15 14 2 40 40 H 1.09002 * 109.47034 * 335.30123 * 15 14 2 41 41 H 1.08995 * 109.47028 * 299.99583 * 18 16 14 42 42 H 1.09005 * 109.47312 * 59.99336 * 18 16 14 43 43 H 1.08998 * 109.47141 * 300.00615 * 19 18 16 44 44 H 1.09005 * 109.46936 * 59.99738 * 19 18 16 45 45 H 0.97000 * 120.00417 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.2843 -0.6925 2.3927 6 6 1.7432 -1.3474 3.5202 7 6 2.9545 -2.0129 3.4881 8 16 3.5421 -2.8431 4.9269 9 6 4.5120 -1.5890 5.8085 10 8 2.3632 -3.1630 5.6529 11 8 4.3904 -3.8644 4.4203 12 6 3.7048 -2.0266 2.3272 13 6 3.2438 -1.3754 1.1984 14 7 2.0183 -0.6905 -1.1962 15 6 1.5741 -2.0561 -1.4862 16 6 2.8763 -0.0696 -2.0297 17 8 3.2437 1.0610 -1.7897 18 6 3.3790 -0.7802 -3.2599 19 6 4.3312 0.1396 -4.0269 20 6 4.8334 -0.5707 -5.2574 21 1 4.5065 -1.5777 -5.4709 22 6 5.7110 0.0645 -6.1102 23 7 6.1497 -0.5555 -7.1838 24 14 6.2770 1.8060 -5.7406 25 1 7.5065 1.7609 -4.9090 26 1 6.5662 2.5132 -7.0140 27 1 5.2081 2.5283 -5.0051 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.3399 -0.1691 2.4191 32 1 1.1571 -1.3364 4.4274 33 1 3.8709 -0.7440 6.0596 34 1 4.9191 -2.0211 6.7228 35 1 5.3294 -1.2488 5.1727 36 1 4.6514 -2.5462 2.3022 37 1 3.8303 -1.3858 0.2915 38 1 0.7281 -2.0248 -2.1728 39 1 2.3914 -2.6149 -1.9421 40 1 1.2723 -2.5445 -0.5597 41 1 3.9077 -1.6866 -2.9653 42 1 2.5353 -1.0428 -3.8981 43 1 3.8022 1.0460 -4.3214 44 1 5.1749 0.4026 -3.3888 45 1 6.7668 -0.1085 -7.7840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292629819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:18 Heat of formation + Delta-G solvation = -76.910910 kcal Electronic energy + Delta-G solvation = -27072.422027 eV Core-core repulsion = 23182.637254 eV Total energy + Delta-G solvation = -3889.784773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.51757 -39.07471 -37.44971 -36.32813 -36.10851 -33.67198 -32.90156 -31.43151 -31.15283 -30.05823 -29.56013 -26.97226 -26.32349 -24.39584 -23.04062 -21.91999 -20.50468 -19.39392 -18.81989 -18.21895 -17.35650 -16.65315 -16.54060 -16.32622 -16.28809 -15.66652 -15.20525 -14.92745 -14.73968 -14.12602 -13.89397 -13.80624 -13.70703 -13.64373 -13.44518 -13.15672 -13.02365 -12.68021 -12.57084 -12.45585 -12.42562 -12.35646 -12.31134 -12.04260 -11.57440 -11.46488 -11.43518 -11.40112 -11.01055 -10.90777 -10.19434 -10.08218 -9.82632 -9.53312 -9.34208 -9.25255 -9.18618 -8.71007 -8.53709 -6.05809 -4.04830 -0.32649 0.48003 1.00175 2.49259 2.93449 2.94380 3.18618 3.34932 3.41801 3.51945 3.58503 3.73576 4.27412 4.32726 4.34809 4.47846 4.54908 4.57579 4.80447 4.94740 4.99722 5.06350 5.14797 5.18122 5.25130 5.29096 5.29656 5.39952 5.45572 5.62769 5.65274 5.69362 5.77123 5.85099 5.90428 6.00032 6.03759 6.13167 6.51366 6.55333 6.63243 7.31098 7.38361 7.46931 7.75411 8.41953 8.52304 8.96973 9.57038 11.07002 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.002497 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.116681 B =11211.971712 C =12005.552736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.118 0.882 4 C -0.035 4.035 5 C -0.138 4.138 6 C -0.025 4.025 7 C -0.666 4.666 8 S 2.502 3.498 9 C -0.650 4.650 10 O -0.941 6.941 11 O -0.937 6.937 12 C -0.021 4.021 13 C -0.122 4.122 14 N -0.621 5.621 15 C 0.079 3.921 16 C 0.512 3.488 17 O -0.537 6.537 18 C -0.120 4.120 19 C 0.002 3.998 20 C -0.525 4.525 21 H 0.073 0.927 22 C 0.069 3.931 23 N -0.903 5.903 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.261 1.261 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.023 0.977 44 H 0.018 0.982 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.656 -2.171 26.783 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.061 3.939 3 H 0.136 0.864 4 C -0.036 4.036 5 C -0.157 4.157 6 C -0.044 4.044 7 C -0.753 4.753 8 S 2.682 3.318 9 C -0.800 4.800 10 O -0.938 6.938 11 O -0.935 6.935 12 C -0.040 4.040 13 C -0.141 4.141 14 N -0.356 5.356 15 C -0.064 4.064 16 C 0.303 3.697 17 O -0.413 6.413 18 C -0.159 4.159 19 C -0.036 4.036 20 C -0.563 4.563 21 H 0.091 0.909 22 C -0.132 4.132 23 N -0.541 5.541 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.186 1.186 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.041 0.959 44 H 0.037 0.963 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.491 -2.387 26.946 29.014 hybrid contribution 0.439 1.609 -0.304 1.696 sum -10.052 -0.777 26.641 28.485 Atomic orbital electron populations 1.22182 0.93702 1.02866 1.02906 1.19960 0.94397 0.97795 0.81782 0.86401 1.20673 0.93779 0.93966 0.95176 1.21209 1.00673 1.01267 0.92525 1.20889 0.92842 0.91636 0.98985 1.30458 1.06722 1.19646 1.18440 1.05060 0.75487 0.76148 0.75097 1.30229 1.15969 1.19078 1.14753 1.93579 1.45741 1.82086 1.72380 1.93598 1.68759 1.52322 1.78775 1.20966 0.98314 0.93599 0.91122 1.21221 0.96098 0.97800 0.99010 1.48081 1.47458 1.16056 1.24019 1.21765 1.00862 0.82364 1.01398 1.21663 0.76817 0.86624 0.84600 1.90646 1.57153 1.18980 1.74501 1.21708 1.01245 1.00484 0.92501 1.19380 0.94103 0.95035 0.95105 1.21093 1.27072 1.02313 1.05846 0.90924 1.24969 0.95644 0.97883 0.94712 1.69905 1.33047 1.37803 1.13385 0.86801 0.79783 0.85328 0.77654 1.20245 1.21429 1.18580 0.91127 0.91356 0.91800 0.84616 0.84155 0.85003 0.85057 0.84875 0.84037 0.84866 0.92373 0.90390 0.91410 0.89538 0.89473 0.95870 0.96339 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 8.41 37.16 0.31 -1.01 16 2 C 0.16 1.83 3.03 -69.08 -0.21 1.62 16 3 H 0.12 1.55 6.92 -51.93 -0.36 1.19 16 4 C -0.03 -0.36 4.85 -104.63 -0.51 -0.87 16 5 C -0.14 -1.16 9.14 -39.58 -0.36 -1.53 16 6 C -0.02 -0.20 9.47 -39.58 -0.37 -0.58 16 7 C -0.67 -5.79 5.66 -39.58 -0.22 -6.01 16 8 S 2.50 18.50 5.80 -107.50 -0.62 17.88 16 9 C -0.65 -2.28 10.80 101.05 1.09 -1.19 16 10 O -0.94 -9.59 17.13 -57.54 -0.99 -10.57 16 11 O -0.94 -10.25 17.13 -57.54 -0.99 -11.23 16 12 C -0.02 -0.21 9.47 -39.59 -0.37 -0.58 16 13 C -0.12 -1.37 8.97 -39.59 -0.35 -1.72 16 14 N -0.62 -7.98 1.78 -175.26 -0.31 -8.29 16 15 C 0.08 0.80 8.72 59.85 0.52 1.32 16 16 C 0.51 8.88 7.53 -10.99 -0.08 8.80 16 17 O -0.54 -11.28 15.32 5.56 0.09 -11.19 16 18 C -0.12 -2.24 4.26 -27.88 -0.12 -2.36 16 19 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 20 C -0.53 -14.81 9.66 -34.44 -0.33 -15.14 16 21 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 22 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 23 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 24 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 27 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 28 H 0.07 0.45 6.51 -51.93 -0.34 0.11 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.49 7.41 -51.93 -0.38 0.10 16 31 H 0.14 0.83 6.16 -52.48 -0.32 0.51 16 32 H 0.14 0.86 7.57 -52.48 -0.40 0.46 16 33 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 35 H 0.13 0.36 8.14 -51.92 -0.42 -0.07 16 36 H 0.14 1.23 7.57 -52.48 -0.40 0.83 16 37 H 0.13 1.64 7.29 -52.48 -0.38 1.26 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.79 6.66 -51.93 -0.35 0.44 16 40 H 0.07 0.59 7.29 -51.93 -0.38 0.21 16 41 H 0.09 1.49 7.41 -51.93 -0.38 1.11 16 42 H 0.09 1.53 8.11 -51.93 -0.42 1.10 16 43 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 44 H 0.02 0.46 7.53 -51.93 -0.39 0.07 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -38.64 378.71 -8.79 -47.43 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.58 Total: -3.05 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -1.21 Total: -17.37 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.46 Total: -35.28 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.89 Total: -32.99 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Atomic # 16 Polarization: 18.50 SS G_CDS: -0.62 Total: 17.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.64 -8.79 -47.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292629819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.480 kcal (2) G-P(sol) polarization free energy of solvation -38.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds